3CCVE

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2616a
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 37
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3ccvE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3ccvE01
5GAGG 1KQSE 5GADG 1QVGE 3I55E 1VQKE 4UY8G 1VQ6E 3CCRE 5JVHE 1YITE 3CPWE 2CQLA 1K73G 4WFNE 1Q81G 1JJ2E 1VQ9E 1QVFE 2ZJRE 3CMEE 1S72E 3I56E 1RL6A 1YIJE 3CXCE 3PIPE 5GAEG 1K9MG 2ZJPE 3CCJE 2QEXE 1VQME 1Q86G 3CC2E 1VQ7E 1W2BE 3OW2E 3CCSE 3CCLE 5HL7E 3DLLE 1NJIG 1YHQE 3CC7E 3G6EE 1VQPE 4IOCE 3CCME 3CCQE 5H1SI 1Q7YG 1N8RG 3PIOE 1M90G 3CMAE 5GAHG 1VQLE 2ZJQE 3CCVE 5AN9B 3G4SE 1YJWE 5DM7E 5DM6E 2OTJE 1VQNE 4U67E 2QA4E 1VQOE 4WF9E 1YJ9E 1VQ8E 4IOAE 3G71E 1KD1G 1M1KG 3J7ZG 4WFBE 1YI2E 3CCEE 2OTLE 3CF5E 3CC4E 4IO9E 1VQ4E 3CD6E 5MLCH 5JVGE 1VQ5E 1YJNE 3CCUE 4WCEE 1KC8G 1Q82G 4WFAE 1K8AG
chains in the Genus database with same CATH superfamily
5GAGG 1KQSE 5GADG 1QVGE 3I55E 1VQKE 4UY8G 1VQ6E 3CCRE 5JVHE 1YITE 3CPWE 2CQLA 1K73G 4WFNE 1Q81G 1JJ2E 1VQ9E 1QVFE 2ZJRE 2OL6O 3CKGA 3CMEE 1S72E 1FJ1E 5B10O 3I56E 1RL6A 3CXCE 1YIJE 3PIPE 5GAEG 1K9MG 1OSPO 2ZJPE 3CCJE 2QEXE 1VQME 1Q86G 2OY1O 3CC2E 1VQ7E 1W2BE 3OW2E 3CCSE 3CCLE 3DLLE 2OL8O 2G8CO 1NJIG 2FKGA 1YHQE 3CC7E 2AF5A 3IGEA 3G6EE 1VQPE 2OY8A 1P4PA 4IOCE 3CCME 3CCQE 5H1SI 1Q7YG 1N8RG 2OL7A 3PIOE 1M90G 2OY7A 3CMAE 2I5ZO 5GAHG 1Q82G 1VQLE 5B2AO 3CCVE 5AN9B 2ZJQE 3G4SE 1YJWE 5DM7E 5DM6E 3AUMO 1VQNE 2OTJE 4U67E 2QA4E 2FKJA 1VQOE 4WF9E 1YJ9E 1VQ8E 4IOAE 3G71E 1KD1G 1M1KG 3J7ZG 2OY5O 4WFBE 1YI2E 3CCEE 3CKFA 2OTLE 2OYBO 3CF5E 3IG9A 3CC4E 2HKDA 4IO9E 1RJLC 3EC5A 1VQ4E 5B3MO 3CD6E 5MLCH 5JVGE 1VQ5E 1YJNE 3CCUE 4WCEE 5B11O 1KC8G 2PI3O 5HL7E 4WFAE 1K8AG 2I5VO
chains in the Genus database with same CATH topology
5GAGG 1KQSE 5GADG 1QVGE 3I55E 1VQKE 4UY8G 1VQ6E 3CCRE 5JVHE 1YITE 3CPWE 2CQLA 1K73G 4WFNE 1Q81G 1JJ2E 1VQ9E 1QVFE 2ZJRE 3CMEE 1S72E 3I56E 1RL6A 1YIJE 3CXCE 3PIPE 5GAEG 1K9MG 2ZJPE 3CCJE 2QEXE 1VQME 1Q86G 3CC2E 1VQ7E 1W2BE 3OW2E 3CCSE 3CCLE 5HL7E 3DLLE 1NJIG 1YHQE 3CC7E 3G6EE 1VQPE 4IOCE 3CCME 3CCQE 5H1SI 1Q7YG 1N8RG 3PIOE 1M90G 3CMAE 5GAHG 1VQLE 2ZJQE 3CCVE 5AN9B 3G4SE 1YJWE 5DM7E 5DM6E 2OTJE 1VQNE 4U67E 2QA4E 1VQOE 4WF9E 1YJ9E 1VQ8E 4IOAE 3G71E 1KD1G 1M1KG 3J7ZG 4WFBE 1YI2E 3CCEE 2OTLE 3CF5E 3CC4E 4IO9E 1VQ4E 3CD6E 5MLCH 5JVGE 1VQ5E 1YJNE 3CCUE 4WCEE 1KC8G 1Q82G 4WFAE 1K8AG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAG G;  1KQS E;  5GAD G;  1QVG E;  3I55 E;  1VQK E;  4UY8 G;  1VQ6 E;  3CCR E;  5JVH E;  1YIT E;  3CPW E;  2CQL A;  1K73 G;  4WFN E;  1Q81 G;  1JJ2 E;  1VQ9 E;  1QVF E;  2ZJR E;  3CME E;  1S72 E;  3I56 E;  1RL6 A;  1YIJ E;  3CXC E;  3PIP E;  5GAE G;  1K9M G;  2ZJP E;  3CCJ E;  2QEX E;  1VQM E;  1Q86 G;  3CC2 E;  1VQ7 E;  1W2B E;  3OW2 E;  3CCS E;  3CCL E;  5HL7 E;  3DLL E;  1NJI G;  1YHQ E;  3CC7 E;  3G6E E;  1VQP E;  4IOC E;  3CCM E;  3CCQ E;  5H1S I;  1Q7Y G;  1N8R G;  3PIO E;  1M90 G;  3CMA E;  5GAH G;  1VQL E;  2ZJQ E;  3CCV E;  5AN9 B;  3G4S E;  1YJW E;  5DM7 E;  5DM6 E;  2OTJ E;  1VQN E;  4U67 E;  2QA4 E;  1VQO E;  4WF9 E;  1YJ9 E;  1VQ8 E;  4IOA E;  3G71 E;  1KD1 G;  1M1K G;  3J7Z G;  4WFB E;  1YI2 E;  3CCE E;  2OTL E;  3CF5 E;  3CC4 E;  4IO9 E;  1VQ4 E;  3CD6 E;  5MLC H;  5JVG E;  1VQ5 E;  1YJN E;  3CCU E;  4WCE E;  1KC8 G;  1Q82 G;  4WFA E;  1K8A G; 
#chains in the Genus database with same CATH topology
 5GAG G;  1KQS E;  5GAD G;  1QVG E;  3I55 E;  1VQK E;  4UY8 G;  1VQ6 E;  3CCR E;  5JVH E;  1YIT E;  3CPW E;  2CQL A;  1K73 G;  4WFN E;  1Q81 G;  1JJ2 E;  1VQ9 E;  1QVF E;  2ZJR E;  2OL6 O;  3CKG A;  3CME E;  1S72 E;  1FJ1 E;  5B10 O;  3I56 E;  1RL6 A;  3CXC E;  1YIJ E;  3PIP E;  5GAE G;  1K9M G;  1OSP O;  2ZJP E;  3CCJ E;  2QEX E;  1VQM E;  1Q86 G;  2OY1 O;  3CC2 E;  1VQ7 E;  1W2B E;  3OW2 E;  3CCS E;  3CCL E;  3DLL E;  2OL8 O;  2G8C O;  1NJI G;  2FKG A;  1YHQ E;  3CC7 E;  2AF5 A;  3IGE A;  3G6E E;  1VQP E;  2OY8 A;  1P4P A;  4IOC E;  3CCM E;  3CCQ E;  5H1S I;  1Q7Y G;  1N8R G;  2OL7 A;  3PIO E;  1M90 G;  2OY7 A;  3CMA E;  2I5Z O;  5GAH G;  1Q82 G;  1VQL E;  5B2A O;  3CCV E;  5AN9 B;  2ZJQ E;  3G4S E;  1YJW E;  5DM7 E;  5DM6 E;  3AUM O;  1VQN E;  2OTJ E;  4U67 E;  2QA4 E;  2FKJ A;  1VQO E;  4WF9 E;  1YJ9 E;  1VQ8 E;  4IOA E;  3G71 E;  1KD1 G;  1M1K G;  3J7Z G;  2OY5 O;  4WFB E;  1YI2 E;  3CCE E;  3CKF A;  2OTL E;  2OYB O;  3CF5 E;  3IG9 A;  3CC4 E;  2HKD A;  4IO9 E;  1RJL C;  3EC5 A;  1VQ4 E;  5B3M O;  3CD6 E;  5MLC H;  5JVG E;  1VQ5 E;  1YJN E;  3CCU E;  4WCE E;  5B11 O;  1KC8 G;  2PI3 O;  5HL7 E;  4WFA E;  1K8A G;  2I5V O; 
#chains in the Genus database with same CATH homology
 5GAG G;  1KQS E;  5GAD G;  1QVG E;  3I55 E;  1VQK E;  4UY8 G;  1VQ6 E;  3CCR E;  5JVH E;  1YIT E;  3CPW E;  2CQL A;  1K73 G;  4WFN E;  1Q81 G;  1JJ2 E;  1VQ9 E;  1QVF E;  2ZJR E;  3CME E;  1S72 E;  3I56 E;  1RL6 A;  1YIJ E;  3CXC E;  3PIP E;  5GAE G;  1K9M G;  2ZJP E;  3CCJ E;  2QEX E;  1VQM E;  1Q86 G;  3CC2 E;  1VQ7 E;  1W2B E;  3OW2 E;  3CCS E;  3CCL E;  5HL7 E;  3DLL E;  1NJI G;  1YHQ E;  3CC7 E;  3G6E E;  1VQP E;  4IOC E;  3CCM E;  3CCQ E;  5H1S I;  1Q7Y G;  1N8R G;  3PIO E;  1M90 G;  3CMA E;  5GAH G;  1VQL E;  2ZJQ E;  3CCV E;  5AN9 B;  3G4S E;  1YJW E;  5DM7 E;  5DM6 E;  2OTJ E;  1VQN E;  4U67 E;  2QA4 E;  1VQO E;  4WF9 E;  1YJ9 E;  1VQ8 E;  4IOA E;  3G71 E;  1KD1 G;  1M1K G;  3J7Z G;  4WFB E;  1YI2 E;  3CCE E;  2OTL E;  3CF5 E;  3CC4 E;  4IO9 E;  1VQ4 E;  3CD6 E;  5MLC H;  5JVG E;  1VQ5 E;  1YJN E;  3CCU E;  4WCE E;  1KC8 G;  1Q82 G;  4WFA E;  1K8A G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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