3CD6H

Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
total genus 33
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3cd6H00
4WCEJ 1YJWH 1W2BH 1VQLH 5GADN 3DLLJ 3CCJH 2QA4H 1JJ2H 3CCMH 1QVGH 3CPWH 4IO9J 1K9MJ 1VQKH 1VQ9H 4IOCJ 1YI2H 3CMEH 1K73J 3CXCH 1Y69K 1VQMH 3CCSH 3I55H 2ZJPJ 1VQOH 3CCQH 3CCUH 1VQ5H 1VQ8H 1M90J 1K8AJ 3CC7H 2ZJRJ 3CC4H 1YJNH 1KD1J 5JVGJ 3CCLH 1WKIA 1VQ6H 1Q86J 3CMAH 5GAHN 5DM7J 1QVFH 3CD6H 3PIOJ 3G71H 3CCVH 5GAEN 3G6EH 4WFBJ 1YITH 4WFAJ 1Q82J 3J7ZM 1VQ4H 3OW2H 2OTJH 1KC8J 3CCEH 1N8RJ 1S72H 4IOAJ 5AN9F 5H1SO 4WFNJ 1KQSH 1YHQH 4U67J 2OTLH 2PA2A 5DM6J 1Q7YJ 3I56H 3CF5J 3PIPJ 5JVHJ 3CCRH 5GAGN 5MLCO 1VQPH 1YJ9H 4WF9J 1VQNH 1YIJH 1M1KJ 3CC2H 1VQ7H 2QEXH 1NJIJ 2ZJQJ 3G4SH 4UY8M 1Q81J 5HL7J
chains in the Genus database with same CATH superfamily
3AN1A 4WCEJ 2JBMA 1YTKA 1YJWH 1O4UA 3C2VA 1QAPA 3ETRC 1W2BH 1FFVB 1BRWA 3NVZC 5HUOA 1VQLH 5GADN 3DLLJ 3L0GA 4AP8A 3CCJH 2QA4H 1JJ2H 4C7ZA 1N63B 3CCMH 1QVGH 3CPWH 3AMZA 4US8A 4IO9J 1K9MJ 1VQKH 3SR6C 1VQ9H 1SIJA 1FM0E 4GA4A 3NS1C 3C2OA 4IOCJ 1DGJA 1YI2H 1FFUB 3CMEH 1K73J 2J0FA 1QPQA 3CXCH 2B7PA 1Y69K 1VQMH 1N5WB 3CCSH 4ZOHA 3I55H 2ZJPJ 1OTPA 4X46A 1FMAE 2TPTA 1VQOH 3FAHA 3CCQH 3CCUH 2DSJA 1VQ5H 4KWWA 1VQ8H 3C2EA 1M90J 1K8AJ 2B7NA 3WO1A 1RM6A 2ZJRJ 3CC7H 3CC4H 3EUB4 5AYYA 4C7YA 1YJNH 2I1OA 4C80A 3FC4A 2OMDA 1KD1J 5JVGJ 3CCLH 3NVVC 5EY3A 1WKIA 1ZXIB 1VQ6H 1Q86J 3CMAH 5GAHN 5DM7J 4US9A 1QVFH 3CD6H 5AYXA 1YTDA 3BIIE 3PIOJ 1N5XA 3G71H 5GAEN 3G6EH 2W54B 4KWVA 3CCVH 4YEKA 5HULA 4YYYA 2B7QA 1V97A 1JROB 1YTEA 5HUPA 4WFBJ 1QPOA 4GA6A 1YITH 3RPFA 1JRPB 4WFAJ 1FIQC 1Q82J 3C2FA 3WO0A 2WK5A 4LHMA 1N62B 3NVWC 3J7ZM 1VQ4H 1QPRA 2W3SB 3OW2H 2OTJH 4EAFA 3CCEH 1KC8J 1N8RJ 1S72H 5EP8A 4IOAJ 1UOUA 5AN9F 3GNNA 5H1SO 4WFNJ 1QPNA 1KQSH 1SB3A 1N60B 2W55B 2Q5WE 2QIEA 1YHQH 4U67J 1NVIE 2OTLH 3VMMA 1X1OA 3PAJA 1VDVA 2PA2A 1WYGA 3H5QA 5AYZA 5DM6J 3I56H 1Q7YJ 3NRZC 4EADA 1NVJA 3B9JC 3CF5J 3PIPJ 5JVHJ 3CCRH 3AM9A 5GAGN 4USAA 3L4PA 1VLBA 5MLCO 1VQPH 1FO4A 1YJ9H 2W3RB 2I14A 4WF9J 4XR5A 1VQNH 1YIJH 1N61B 2WP4A 2WK6A 1M1KJ 4GA5A 5MPOC 3TQVA 3NVYC 3CC2H 3C2RA 3WNZA 2QEXH 1VQ7H 1NJIJ 2ZJQJ 2E3TA 3G4SH 4UY8M 4I9AA 1Q81J 1AZYA 5HL7J
chains in the Genus database with same CATH topology
4WCEJ 1YJWH 1W2BH 1VQLH 5GADN 3DLLJ 3CCJH 2QA4H 1JJ2H 3CCMH 1QVGH 3CPWH 4IO9J 1K9MJ 1VQKH 1VQ9H 4IOCJ 1YI2H 3CMEH 1K73J 3CXCH 1Y69K 1VQMH 3CCSH 3I55H 2ZJPJ 1VQOH 3CCQH 3CCUH 1VQ5H 1VQ8H 1M90J 1K8AJ 3CC7H 2ZJRJ 3CC4H 1YJNH 1KD1J 5JVGJ 3CCLH 1WKIA 1VQ6H 1Q86J 3CMAH 5GAHN 5DM7J 1QVFH 3CD6H 3PIOJ 3G71H 3CCVH 5GAEN 3G6EH 4WFBJ 1YITH 4WFAJ 1Q82J 3J7ZM 1VQ4H 3OW2H 2OTJH 1KC8J 3CCEH 1N8RJ 1S72H 4IOAJ 5AN9F 5H1SO 4WFNJ 1KQSH 1YHQH 4U67J 2OTLH 2PA2A 5DM6J 1Q7YJ 3I56H 3CF5J 3PIPJ 5JVHJ 3CCRH 5GAGN 5MLCO 1VQPH 1YJ9H 4WF9J 1VQNH 1YIJH 1M1KJ 3CC2H 1VQ7H 2QEXH 1NJIJ 2ZJQJ 3G4SH 4UY8M 1Q81J 5HL7J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WCE J;  1YJW H;  1W2B H;  1VQL H;  5GAD N;  3DLL J;  3CCJ H;  2QA4 H;  1JJ2 H;  3CCM H;  1QVG H;  3CPW H;  4IO9 J;  1K9M J;  1VQK H;  1VQ9 H;  4IOC J;  1YI2 H;  3CME H;  1K73 J;  3CXC H;  1Y69 K;  1VQM H;  3CCS H;  3I55 H;  2ZJP J;  1VQO H;  3CCQ H;  3CCU H;  1VQ5 H;  1VQ8 H;  1M90 J;  1K8A J;  3CC7 H;  2ZJR J;  3CC4 H;  1YJN H;  1KD1 J;  5JVG J;  3CCL H;  1WKI A;  1VQ6 H;  1Q86 J;  3CMA H;  5GAH N;  5DM7 J;  1QVF H;  3CD6 H;  3PIO J;  3G71 H;  3CCV H;  5GAE N;  3G6E H;  4WFB J;  1YIT H;  4WFA J;  1Q82 J;  3J7Z M;  1VQ4 H;  3OW2 H;  2OTJ H;  1KC8 J;  3CCE H;  1N8R J;  1S72 H;  4IOA J;  5AN9 F;  5H1S O;  4WFN J;  1KQS H;  1YHQ H;  4U67 J;  2OTL H;  2PA2 A;  5DM6 J;  1Q7Y J;  3I56 H;  3CF5 J;  3PIP J;  5JVH J;  3CCR H;  5GAG N;  5MLC O;  1VQP H;  1YJ9 H;  4WF9 J;  1VQN H;  1YIJ H;  1M1K J;  3CC2 H;  1VQ7 H;  2QEX H;  1NJI J;  2ZJQ J;  3G4S H;  4UY8 M;  1Q81 J;  5HL7 J; 
#chains in the Genus database with same CATH topology
 3AN1 A;  4WCE J;  2JBM A;  1YTK A;  1YJW H;  1O4U A;  3C2V A;  1QAP A;  3ETR C;  1W2B H;  1FFV B;  1BRW A;  3NVZ C;  5HUO A;  1VQL H;  5GAD N;  3DLL J;  3L0G A;  4AP8 A;  3CCJ H;  2QA4 H;  1JJ2 H;  4C7Z A;  1N63 B;  3CCM H;  1QVG H;  3CPW H;  3AMZ A;  4US8 A;  4IO9 J;  1K9M J;  1VQK H;  3SR6 C;  1VQ9 H;  1SIJ A;  1FM0 E;  4GA4 A;  3NS1 C;  3C2O A;  4IOC J;  1DGJ A;  1YI2 H;  1FFU B;  3CME H;  1K73 J;  2J0F A;  1QPQ A;  3CXC H;  2B7P A;  1Y69 K;  1VQM H;  1N5W B;  3CCS H;  4ZOH A;  3I55 H;  2ZJP J;  1OTP A;  4X46 A;  1FMA E;  2TPT A;  1VQO H;  3FAH A;  3CCQ H;  3CCU H;  2DSJ A;  1VQ5 H;  4KWW A;  1VQ8 H;  3C2E A;  1M90 J;  1K8A J;  2B7N A;  3WO1 A;  1RM6 A;  2ZJR J;  3CC7 H;  3CC4 H;  3EUB 4;  5AYY A;  4C7Y A;  1YJN H;  2I1O A;  4C80 A;  3FC4 A;  2OMD A;  1KD1 J;  5JVG J;  3CCL H;  3NVV C;  5EY3 A;  1WKI A;  1ZXI B;  1VQ6 H;  1Q86 J;  3CMA H;  5GAH N;  5DM7 J;  4US9 A;  1QVF H;  3CD6 H;  5AYX A;  1YTD A;  3BII E;  3PIO J;  1N5X A;  3G71 H;  5GAE N;  3G6E H;  2W54 B;  4KWV A;  3CCV H;  4YEK A;  5HUL A;  4YYY A;  2B7Q A;  1V97 A;  1JRO B;  1YTE A;  5HUP A;  4WFB J;  1QPO A;  4GA6 A;  1YIT H;  3RPF A;  1JRP B;  4WFA J;  1FIQ C;  1Q82 J;  3C2F A;  3WO0 A;  2WK5 A;  4LHM A;  1N62 B;  3NVW C;  3J7Z M;  1VQ4 H;  1QPR A;  2W3S B;  3OW2 H;  2OTJ H;  4EAF A;  3CCE H;  1KC8 J;  1N8R J;  1S72 H;  5EP8 A;  4IOA J;  1UOU A;  5AN9 F;  3GNN A;  5H1S O;  4WFN J;  1QPN A;  1KQS H;  1SB3 A;  1N60 B;  2W55 B;  2Q5W E;  2QIE A;  1YHQ H;  4U67 J;  1NVI E;  2OTL H;  3VMM A;  1X1O A;  3PAJ A;  1VDV A;  2PA2 A;  1WYG A;  3H5Q A;  5AYZ A;  5DM6 J;  3I56 H;  1Q7Y J;  3NRZ C;  4EAD A;  1NVJ A;  3B9J C;  3CF5 J;  3PIP J;  5JVH J;  3CCR H;  3AM9 A;  5GAG N;  4USA A;  3L4P A;  1VLB A;  5MLC O;  1VQP H;  1FO4 A;  1YJ9 H;  2W3R B;  2I14 A;  4WF9 J;  4XR5 A;  1VQN H;  1YIJ H;  1N61 B;  2WP4 A;  2WK6 A;  1M1K J;  4GA5 A;  5MPO C;  3TQV A;  3NVY C;  3CC2 H;  3C2R A;  3WNZ A;  2QEX H;  1VQ7 H;  1NJI J;  2ZJQ J;  2E3T A;  3G4S H;  4UY8 M;  4I9A A;  1Q81 J;  1AZY A;  5HL7 J; 
#chains in the Genus database with same CATH homology
 4WCE J;  1YJW H;  1W2B H;  1VQL H;  5GAD N;  3DLL J;  3CCJ H;  2QA4 H;  1JJ2 H;  3CCM H;  1QVG H;  3CPW H;  4IO9 J;  1K9M J;  1VQK H;  1VQ9 H;  4IOC J;  1YI2 H;  3CME H;  1K73 J;  3CXC H;  1Y69 K;  1VQM H;  3CCS H;  3I55 H;  2ZJP J;  1VQO H;  3CCQ H;  3CCU H;  1VQ5 H;  1VQ8 H;  1M90 J;  1K8A J;  3CC7 H;  2ZJR J;  3CC4 H;  1YJN H;  1KD1 J;  5JVG J;  3CCL H;  1WKI A;  1VQ6 H;  1Q86 J;  3CMA H;  5GAH N;  5DM7 J;  1QVF H;  3CD6 H;  3PIO J;  3G71 H;  3CCV H;  5GAE N;  3G6E H;  4WFB J;  1YIT H;  4WFA J;  1Q82 J;  3J7Z M;  1VQ4 H;  3OW2 H;  2OTJ H;  1KC8 J;  3CCE H;  1N8R J;  1S72 H;  4IOA J;  5AN9 F;  5H1S O;  4WFN J;  1KQS H;  1YHQ H;  4U67 J;  2OTL H;  2PA2 A;  5DM6 J;  1Q7Y J;  3I56 H;  3CF5 J;  3PIP J;  5JVH J;  3CCR H;  5GAG N;  5MLC O;  1VQP H;  1YJ9 H;  4WF9 J;  1VQN H;  1YIJ H;  1M1K J;  3CC2 H;  1VQ7 H;  2QEX H;  1NJI J;  2ZJQ J;  3G4S H;  4UY8 M;  1Q81 J;  5HL7 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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