3CD6W

Co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
total genus 47
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3cd6W02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3cd6W01
3CPWV 1VQ5W 3CC7W 3G4SW 4WCEW 3J7ZZ 1YI2W 3DLLW 1VQKW 1VQNW 1QVFV 1VQPW 3CC2W 1VQLW 5JVGW 3CCEW 3CMEW 3G71W 3G6EW 1QVGV 1Q81X 4WF9W 1VQ6W 3CCSW 1Q7YX 4WFAW 1VQ8W 2QEXW 1K9MX 5GAEa 1YJ9W 1W2BV 4IO9W 1KD1X 5JVHW 4WFNW 1VQ9W 3CC4W 3CD6W 1NJIX 1S72W 1YJWW 1M90X 3CF5W 3I55W 2ZJPW 3CMAW 2ZJQW 5DM6W 1VQ4W 1VQMW 3CCLW 3CXCV 3CCMW 4U67W 3OW2V 1JJ2V 1M1KX 1YJNW 1VQ7W 1Q82X 1YITW 4IOCW 1Q86X 3CCUW 1KQSV 3CCJW 2ZJRW 1YIJW 3CCRW 1VQOW 1YHQW 4WFBW 5DM7W 3PIPW 1N8RX 1KC8X 3I56W 5GADa 4UY8Z 2QA4W 1BXYA 3CCQW 1K73X 3PIOW 4IOAW 5HL7W 3CCVW 5GAGa 1K8AX 2OTLW 2OTJW 5GAHa
chains in the Genus database with same CATH superfamily
3CPWV 3G1BA 5GW7A 1VQ5W 3GQ0A 4CJNA 3CC7W 3G4SW 3W7XA 1MBUC 1R6QC 4WCEW 3J7ZZ 1YI2W 5CA3A 3DLLW 1VQKW 3ZG5A 1VQNW 3GW1A 2WA8A 1QVFV 1CTFA 1RQVA 1VQPW 3CC2W 3O1FB 1R6OC 3W7WA 1VQLW 3O2HA 5JVGW 3CCEW 3CMEW 3G71W 3G6EW 1QVGV 1Q81X 4WF9W 1VQ6W 1DD4A 3O1FA 3CCSW 1Q7YX 4WFAW 1VQ8W 2QEXW 1K9MX 5GAEa 1YJ9W 3DNJA 1W2BV 4IO9W 1KD1X 5M1AA 5JVHW 3W7UA 4WFNW 5M18A 3GQ1A 1VQ9W 3CC4W 3CD6W 1MWSA 1NJIX 1S72W 3O2OA 1YJWW 1M90X 3D3IA 3CF5W 3I55W 2ZJPW 3CMAW 4C1NA 2ZJQW 5DM6W 1DD3A 2W9RA 1VQ4W 1MBVB 3G19A 3ZG0A 1VQMW 3CCLW 3ZFZA 4DKIA 1VQQA 3CXCV 4BL2A 1MG9A 3CCMW 1LZWA 4U67W 3OW2V 1JJ2V 1MWRA 1M1KX 1RQSA 1RQUA 3W7SA 1YJNW 1VQ7W 1Q82X 1YITW 4IOCW 1Q86X 3CCUW 1KQSV 3CCJW 2ZJRW 1YIJW 3CCRW 1MWUA 1VQOW 1YHQW 4WFBW 5DM7W 3PIPW 1N8RX 1KC8X 3I56W 4YJXA 5GADa 4UY8Z 1MBXC 4BL3A 2QA4W 1BXYA 4CPKA 3W7TA 3CCQW 1K73X 3PIOW 4IOAW 4YKAA 5HL7W 3CCVW 5GAGa 4YJMA 3G3PA 3O2BA 1K8AX 2OTLW 5M19A 2WA9A 1MWTA 2OTJW 5GAHa
chains in the Genus database with same CATH topology
3CPWV 1VQ5W 3CC7W 3G4SW 4WCEW 3J7ZZ 1YI2W 3DLLW 1VQKW 1VQNW 1QVFV 1VQPW 3CC2W 1VQLW 5JVGW 3CCEW 3CMEW 3G71W 3G6EW 1QVGV 1Q81X 4WF9W 1VQ6W 3CCSW 1Q7YX 4WFAW 1VQ8W 2QEXW 1K9MX 5GAEa 1YJ9W 1W2BV 4IO9W 1KD1X 5JVHW 4WFNW 1VQ9W 3CC4W 3CD6W 1NJIX 1S72W 1YJWW 1M90X 3CF5W 3I55W 2ZJPW 3CMAW 4C1NA 2ZJQW 5DM6W 1VQ4W 1VQMW 3CCLW 3CXCV 3CCMW 4U67W 3OW2V 1JJ2V 1M1KX 1YJNW 1VQ7W 1Q82X 1YITW 4IOCW 1Q86X 3CCUW 1KQSV 3CCJW 2ZJRW 1YIJW 3CCRW 1VQOW 1YHQW 4WFBW 5DM7W 3PIPW 1N8RX 1KC8X 3I56W 5GADa 4UY8Z 2QA4W 1BXYA 3CCQW 1K73X 3PIOW 4IOAW 5HL7W 3CCVW 5GAGa 1K8AX 2OTLW 2OTJW 5GAHa
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CPW V;  1VQ5 W;  3CC7 W;  3G4S W;  4WCE W;  3J7Z Z;  1YI2 W;  3DLL W;  1VQK W;  1VQN W;  1QVF V;  1VQP W;  3CC2 W;  1VQL W;  5JVG W;  3CCE W;  3CME W;  3G71 W;  3G6E W;  1QVG V;  1Q81 X;  4WF9 W;  1VQ6 W;  3CCS W;  1Q7Y X;  4WFA W;  1VQ8 W;  2QEX W;  1K9M X;  5GAE a;  1YJ9 W;  1W2B V;  4IO9 W;  1KD1 X;  5JVH W;  4WFN W;  1VQ9 W;  3CC4 W;  3CD6 W;  1NJI X;  1S72 W;  1YJW W;  1M90 X;  3CF5 W;  3I55 W;  2ZJP W;  3CMA W;  2ZJQ W;  5DM6 W;  1VQ4 W;  1VQM W;  3CCL W;  3CXC V;  3CCM W;  4U67 W;  3OW2 V;  1JJ2 V;  1M1K X;  1YJN W;  1VQ7 W;  1Q82 X;  1YIT W;  4IOC W;  1Q86 X;  3CCU W;  1KQS V;  3CCJ W;  2ZJR W;  1YIJ W;  3CCR W;  1VQO W;  1YHQ W;  4WFB W;  5DM7 W;  3PIP W;  1N8R X;  1KC8 X;  3I56 W;  5GAD a;  4UY8 Z;  2QA4 W;  1BXY A;  3CCQ W;  1K73 X;  3PIO W;  4IOA W;  5HL7 W;  3CCV W;  5GAG a;  1K8A X;  2OTL W;  2OTJ W;  5GAH a; 
#chains in the Genus database with same CATH topology
 3CPW V;  3G1B A;  5GW7 A;  1VQ5 W;  3GQ0 A;  4CJN A;  3CC7 W;  3G4S W;  3W7X A;  1MBU C;  1R6Q C;  4WCE W;  3J7Z Z;  1YI2 W;  5CA3 A;  3DLL W;  1VQK W;  3ZG5 A;  1VQN W;  3GW1 A;  2WA8 A;  1QVF V;  1CTF A;  1RQV A;  1VQP W;  3CC2 W;  3O1F B;  1R6O C;  3W7W A;  1VQL W;  3O2H A;  5JVG W;  3CCE W;  3CME W;  3G71 W;  3G6E W;  1QVG V;  1Q81 X;  4WF9 W;  1VQ6 W;  1DD4 A;  3O1F A;  3CCS W;  1Q7Y X;  4WFA W;  1VQ8 W;  2QEX W;  1K9M X;  5GAE a;  1YJ9 W;  3DNJ A;  1W2B V;  4IO9 W;  1KD1 X;  5M1A A;  5JVH W;  3W7U A;  4WFN W;  5M18 A;  3GQ1 A;  1VQ9 W;  3CC4 W;  3CD6 W;  1MWS A;  1NJI X;  1S72 W;  3O2O A;  1YJW W;  1M90 X;  3D3I A;  3CF5 W;  3I55 W;  2ZJP W;  3CMA W;  4C1N A;  2ZJQ W;  5DM6 W;  1DD3 A;  2W9R A;  1VQ4 W;  1MBV B;  3G19 A;  3ZG0 A;  1VQM W;  3CCL W;  3ZFZ A;  4DKI A;  1VQQ A;  3CXC V;  4BL2 A;  1MG9 A;  3CCM W;  1LZW A;  4U67 W;  3OW2 V;  1JJ2 V;  1MWR A;  1M1K X;  1RQS A;  1RQU A;  3W7S A;  1YJN W;  1VQ7 W;  1Q82 X;  1YIT W;  4IOC W;  1Q86 X;  3CCU W;  1KQS V;  3CCJ W;  2ZJR W;  1YIJ W;  3CCR W;  1MWU A;  1VQO W;  1YHQ W;  4WFB W;  5DM7 W;  3PIP W;  1N8R X;  1KC8 X;  3I56 W;  4YJX A;  5GAD a;  4UY8 Z;  1MBX C;  4BL3 A;  2QA4 W;  1BXY A;  4CPK A;  3W7T A;  3CCQ W;  1K73 X;  3PIO W;  4IOA W;  4YKA A;  5HL7 W;  3CCV W;  5GAG a;  4YJM A;  3G3P A;  3O2B A;  1K8A X;  2OTL W;  5M19 A;  2WA9 A;  1MWT A;  2OTJ W;  5GAH a; 
#chains in the Genus database with same CATH homology
 3CPW V;  1VQ5 W;  3CC7 W;  3G4S W;  4WCE W;  3J7Z Z;  1YI2 W;  3DLL W;  1VQK W;  1VQN W;  1QVF V;  1VQP W;  3CC2 W;  1VQL W;  5JVG W;  3CCE W;  3CME W;  3G71 W;  3G6E W;  1QVG V;  1Q81 X;  4WF9 W;  1VQ6 W;  3CCS W;  1Q7Y X;  4WFA W;  1VQ8 W;  2QEX W;  1K9M X;  5GAE a;  1YJ9 W;  1W2B V;  4IO9 W;  1KD1 X;  5JVH W;  4WFN W;  1VQ9 W;  3CC4 W;  3CD6 W;  1NJI X;  1S72 W;  1YJW W;  1M90 X;  3CF5 W;  3I55 W;  2ZJP W;  3CMA W;  4C1N A;  2ZJQ W;  5DM6 W;  1VQ4 W;  1VQM W;  3CCL W;  3CXC V;  3CCM W;  4U67 W;  3OW2 V;  1JJ2 V;  1M1K X;  1YJN W;  1VQ7 W;  1Q82 X;  1YIT W;  4IOC W;  1Q86 X;  3CCU W;  1KQS V;  3CCJ W;  2ZJR W;  1YIJ W;  3CCR W;  1VQO W;  1YHQ W;  4WFB W;  5DM7 W;  3PIP W;  1N8R X;  1KC8 X;  3I56 W;  5GAD a;  4UY8 Z;  2QA4 W;  1BXY A;  3CCQ W;  1K73 X;  3PIO W;  4IOA W;  5HL7 W;  3CCV W;  5GAG a;  1K8A X;  2OTL W;  2OTJ W;  5GAH a; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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