3CDKA

Crystal structure of the co-expressed succinyl-coa transferase a and b complex from bacillus subtilis
Total Genus 67
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
229
structure length
229
Chain Sequence
GKVLSSSKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDWGLGLLLANKQIKKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEKRTVQQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
publication title Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis.
rcsb
source organism Bacillus subtilis
total genus 67
structure length 229
sequence length 229
chains with identical sequence C
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2008-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3cdkA01
3DLXA 2HJ0A 1M3EA 3QDQA 4KGBA 3K6MA 5DBNB 3RRLB 1OOYA 2NRBA 5DBNA 3RRLA 2AHUA 1O9LA 3CDKB 3D3UA 2OASA 1K6DA 3GK7A 3OXOA 1POIB 1XR4A 1OPEA 3CDKA 2NRCA 2AHWA 2AHVA 1POIA 1OOZA 3EH7A
chains in the Genus database with same CATH superfamily
3DLXA 2HJ0A 1M3EA 3QDQA 4KGBA 3K6MA 5DBNB 3RRLB 1OOYA 2NRBA 5DBNA 3RRLA 2AHUA 1O9LA 3CDKB 3D3UA 2OASA 1K6DA 3GK7A 3OXOA 1POIB 1XR4A 1OPEA 3CDKA 2NRCA 2AHWA 2AHVA 1POIA 1OOZA 3EH7A
chains in the Genus database with same CATH topology
3DLXA 2HJ0A 1M3EA 3QDQA 4KGBA 3K6MA 5DBNB 3RRLB 1OOYA 2NRBA 5DBNA 3RRLA 2AHUA 1O9LA 3CDKB 3D3UA 2OASA 1K6DA 3GK7A 3OXOA 1POIB 1XR4A 1OPEA 3CDKA 2NRCA 2AHWA 2AHVA 1POIA 1OOZA 3EH7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DLX A;  2HJ0 A;  1M3E A;  3QDQ A;  4KGB A;  3K6M A;  5DBN B;  3RRL B;  1OOY A;  2NRB A;  5DBN A;  3RRL A;  2AHU A;  1O9L A;  3CDK B;  3D3U A;  2OAS A;  1K6D A;  3GK7 A;  3OXO A;  1POI B;  1XR4 A;  1OPE A;  3CDK A;  2NRC A;  2AHW A;  2AHV A;  1POI A;  1OOZ A;  3EH7 A; 
#chains in the Genus database with same CATH topology
 3DLX A;  2HJ0 A;  1M3E A;  3QDQ A;  4KGB A;  3K6M A;  5DBN B;  3RRL B;  1OOY A;  2NRB A;  5DBN A;  3RRL A;  2AHU A;  1O9L A;  3CDK B;  3D3U A;  2OAS A;  1K6D A;  3GK7 A;  3OXO A;  1POI B;  1XR4 A;  1OPE A;  3CDK A;  2NRC A;  2AHW A;  2AHV A;  1POI A;  1OOZ A;  3EH7 A; 
#chains in the Genus database with same CATH homology
 3DLX A;  2HJ0 A;  1M3E A;  3QDQ A;  4KGB A;  3K6M A;  5DBN B;  3RRL B;  1OOY A;  2NRB A;  5DBN A;  3RRL A;  2AHU A;  1O9L A;  3CDK B;  3D3U A;  2OAS A;  1K6D A;  3GK7 A;  3OXO A;  1POI B;  1XR4 A;  1OPE A;  3CDK A;  2NRC A;  2AHW A;  2AHV A;  1POI A;  1OOZ A;  3EH7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...