3CDKB

Crystal structure of the co-expressed succinyl-coa transferase a and b complex from bacillus subtilis
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
213
structure length
212
Chain Sequence
MKEARKRMVKRAVQEIKDGMNVNLGIGMPTLVANEIPDGVHVMLQSENGLLGIGPYPLEGTEDADLINAGKETITEVTGASYFDSAESFAMIRGGHIDLAILGGMEVSEQGDLANWMIPGKVKGMGGAMDLVNGAKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITDLAVFDFVNGRMTLTELQDGVTIEEVYEKTEADFAVSQSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
publication title Crystal structure of the co-expressed succinyl-CoA transferase A and B complex from Bacillus subtilis.
rcsb
source organism Bacillus subtilis
molecule tags Transferase
total genus 51
structure length 212
sequence length 213
chains with identical sequence D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2008-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3cdkB00
5DBNB 5DBNA 3DLXA 2AHVA 1OOZA 3QDQA 2NRCA 1OOYA 1K6DA 2AHWA 2AHUA 1O9LA 3CDKB 3EH7A 3CDKA 1POIB 1XR4A 1POIA 3RRLA 3RRLB 3OXOA 3D3UA 2OASA 2HJ0A 1OPEA 1M3EA 3K6MA 2NRBA 3GK7A 4KGBA
chains in the Genus database with same CATH superfamily
5DBNB 5DBNA 3DLXA 2AHVA 1OOZA 3QDQA 2NRCA 1OOYA 1K6DA 2AHWA 2AHUA 1O9LA 3CDKB 3EH7A 3CDKA 1POIB 1XR4A 1POIA 3RRLA 3RRLB 3OXOA 3D3UA 2OASA 2HJ0A 1OPEA 1M3EA 3K6MA 2NRBA 3GK7A 4KGBA
chains in the Genus database with same CATH topology
5DBNB 5DBNA 3DLXA 2AHVA 1OOZA 3QDQA 2NRCA 1OOYA 1K6DA 2AHWA 2AHUA 1O9LA 3CDKB 3EH7A 3CDKA 1POIB 1XR4A 1POIA 3RRLA 3RRLB 3OXOA 3D3UA 2OASA 2HJ0A 1OPEA 1M3EA 3K6MA 2NRBA 3GK7A 4KGBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DBN B;  5DBN A;  3DLX A;  2AHV A;  1OOZ A;  3QDQ A;  2NRC A;  1OOY A;  1K6D A;  2AHW A;  2AHU A;  1O9L A;  3CDK B;  3EH7 A;  3CDK A;  1POI B;  1XR4 A;  1POI A;  3RRL A;  3RRL B;  3OXO A;  3D3U A;  2OAS A;  2HJ0 A;  1OPE A;  1M3E A;  3K6M A;  2NRB A;  3GK7 A;  4KGB A; 
#chains in the Genus database with same CATH topology
 5DBN B;  5DBN A;  3DLX A;  2AHV A;  1OOZ A;  3QDQ A;  2NRC A;  1OOY A;  1K6D A;  2AHW A;  2AHU A;  1O9L A;  3CDK B;  3EH7 A;  3CDK A;  1POI B;  1XR4 A;  1POI A;  3RRL A;  3RRL B;  3OXO A;  3D3U A;  2OAS A;  2HJ0 A;  1OPE A;  1M3E A;  3K6M A;  2NRB A;  3GK7 A;  4KGB A; 
#chains in the Genus database with same CATH homology
 5DBN B;  5DBN A;  3DLX A;  2AHV A;  1OOZ A;  3QDQ A;  2NRC A;  1OOY A;  1K6D A;  2AHW A;  2AHU A;  1O9L A;  3CDK B;  3EH7 A;  3CDK A;  1POI B;  1XR4 A;  1POI A;  3RRL A;  3RRL B;  3OXO A;  3D3U A;  2OAS A;  2HJ0 A;  1OPE A;  1M3E A;  3K6M A;  2NRB A;  3GK7 A;  4KGB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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