The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
281
|
sequence length |
766
|
structure length |
766
|
Chain Sequence |
NAGPTLFPGLEGYRDDWNFKLLDRYEPVITPMCDQCCYCTYGPCDLSGNKRGACGIDMKGHNGREFFLRVITGTACHAAHGRHLLDHLIEKYGEDLPLTLGQSNVLTPNITISTGLSPKTLGEVKPAMEYVEEQLTQLLATVHAGQESAEIDYDSKALFSGSLDHVGMEISDIVQVAAYDFPKADPEAPLVEIGMGTIDKSKPFLCVIGHNVAGVTYMMDYMEDNNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIGSMSKELKVIRSGMPDVIVVDEQCVRGDIVPEAQKLKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVMLDYDKLGELCVRLTMEMAPIRDAAGITALPTDEELVNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKEIPILNVIEKIAQKQIAEEKGLMRAGRGQVSDAEIRAEGLNLVMGTTPGIIAIIGCPNYAGGTKDVYYIAEEFLKRNFIVVTTGCGAMDIGMFKDADGKTLYERFPGGFQCGGLANIGSCVSNAHITGAAEKVAAIFAQRTLEGNLAEIGDYILNRVGACGLAWGAFSQKASSIGTGCNIFGIPAVLGPHSSKYRRALIAKTYEEDKWKVYDARNGQEMPIPPAPEFLLTTAETWQEAIPMMAKACIRPSDNSMGRAIKLTHWMELHKKYLGGKEPEDWWKFVRTEADLPLATREALLKELEKEHGWEIDWKRKKIISGPKIKFDVSAQPTNLKRLCKE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structure of the alpha2 epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarboxylase/synthase complex
pubmed doi rcsb |
molecule tags |
Oxidoreductase
|
molecule keywords |
Acetyl-CoA decarboxylase/synthase alpha subunit
|
total genus |
281
|
structure length |
766
|
sequence length |
766
|
ec nomenclature |
ec
1.2.7.4: Anaerobic carbon-monoxide dehydrogenase. |
pdb deposition date | 2008-03-01 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF03063 | Prismane | Prismane/CO dehydrogenase family |
A | PF12838 | Fer4_7 | 4Fe-4S dicluster domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 | Alpha-helical ferredoxin | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |