3CF5G

Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 24
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2008-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 3cf5G00
3CMEJ 1YIJJ 4V19N 3CCRJ 2OTLJ 3CCEJ 1K9MK 3DLLG 3CF5G 1YITJ 1Q81K 4IO9G 3CCUJ 3PIPG 1KD1K 3CXCI 2OTJJ 3CMAJ 1N8RK 3CCJJ 1Q7YK 1VQ8J 3CC2J 1KC8K 3I56J 3CCSJ 3CC7J 1QVFI 1VQ4J 2ZJQG 3CCQJ 2ZJRG 1VQNJ 1YI2J 3CCMJ 1VQ6J 3G4SJ 1Q86K 1VQ5J 1VQMJ 1YJNJ 3J7YK 1JJ2I 1K73K 3CCLJ 1YHQJ 1VQLJ 3G71J 2ZJPG 1Q82K 3CD6J 3PIOG 2QA4J 1NJIK 3I55J 3CCVJ 1KQSI 1YJ9J 4IOAG 3OW2I 3CC4J 1VQKJ 1K8AK 3G6EJ 1M90K 1M1KK 3CPWI 1VQ7J 1W2BI 4IOCG 1YJWJ 1VQOJ 2QEXJ 1QVGI 1J3AA 1VQPJ 1S72J 1VQ9J
chains in the Genus database with same CATH superfamily
3CMEJ 1YIJJ 4V19N 3CCRJ 2OTLJ 3CCEJ 1K9MK 3DLLG 3CF5G 1YITJ 1Q81K 4IO9G 3CCUJ 3PIPG 1KD1K 3CXCI 2OTJJ 3CMAJ 1N8RK 3CCJJ 1Q7YK 1VQ8J 3CC2J 1KC8K 3I56J 3CCSJ 3CC7J 1QVFI 1VQ4J 2ZJQG 3CCQJ 2ZJRG 1VQNJ 1YI2J 3CCMJ 1VQ6J 3G4SJ 1Q86K 1VQ5J 1VQMJ 1YJNJ 3J7YK 1JJ2I 1K73K 3CCLJ 1YHQJ 1VQLJ 3G71J 2ZJPG 1Q82K 3CD6J 3PIOG 2QA4J 1NJIK 3I55J 3CCVJ 1KQSI 1YJ9J 4IOAG 3OW2I 3CC4J 1VQKJ 1K8AK 3G6EJ 1M90K 1M1KK 3CPWI 1VQ7J 1W2BI 4IOCG 1YJWJ 1VQOJ 2QEXJ 1QVGI 1J3AA 1VQPJ 1S72J 1VQ9J
chains in the Genus database with same CATH topology
3CMEJ 1YIJJ 4V19N 3CCRJ 2OTLJ 3CCEJ 1K9MK 3DLLG 3CF5G 1YITJ 1Q81K 4IO9G 3CCUJ 3PIPG 1KD1K 3CXCI 2OTJJ 3CMAJ 1N8RK 3CCJJ 1Q7YK 1VQ8J 3CC2J 1KC8K 3I56J 3CCSJ 3CC7J 1QVFI 1VQ4J 2ZJQG 3CCQJ 2ZJRG 1VQNJ 1YI2J 3CCMJ 1VQ6J 3G4SJ 1Q86K 1VQ5J 1VQMJ 1YJNJ 3J7YK 1JJ2I 1K73K 3CCLJ 1YHQJ 1VQLJ 3G71J 2ZJPG 1Q82K 3CD6J 3PIOG 2QA4J 1NJIK 3I55J 3CCVJ 1KQSI 1YJ9J 4IOAG 3OW2I 3CC4J 1VQKJ 1K8AK 3G6EJ 1M90K 1M1KK 3CPWI 1VQ7J 1W2BI 4IOCG 1YJWJ 1VQOJ 2QEXJ 1QVGI 1J3AA 1VQPJ 1S72J 1VQ9J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CME J;  1YIJ J;  4V19 N;  3CCR J;  2OTL J;  3CCE J;  1K9M K;  3DLL G;  3CF5 G;  1YIT J;  1Q81 K;  4IO9 G;  3CCU J;  3PIP G;  1KD1 K;  3CXC I;  2OTJ J;  3CMA J;  1N8R K;  3CCJ J;  1Q7Y K;  1VQ8 J;  3CC2 J;  1KC8 K;  3I56 J;  3CCS J;  3CC7 J;  1QVF I;  1VQ4 J;  2ZJQ G;  3CCQ J;  2ZJR G;  1VQN J;  1YI2 J;  3CCM J;  1VQ6 J;  3G4S J;  1Q86 K;  1VQ5 J;  1VQM J;  1YJN J;  3J7Y K;  1JJ2 I;  1K73 K;  3CCL J;  1YHQ J;  1VQL J;  3G71 J;  2ZJP G;  1Q82 K;  3CD6 J;  3PIO G;  2QA4 J;  1NJI K;  3I55 J;  3CCV J;  1KQS I;  1YJ9 J;  4IOA G;  3OW2 I;  3CC4 J;  1VQK J;  1K8A K;  3G6E J;  1M90 K;  1M1K K;  3CPW I;  1VQ7 J;  1W2B I;  4IOC G;  1YJW J;  1VQO J;  2QEX J;  1QVG I;  1J3A A;  1VQP J;  1S72 J;  1VQ9 J; 
#chains in the Genus database with same CATH topology
 3CME J;  1YIJ J;  4V19 N;  3CCR J;  2OTL J;  3CCE J;  1K9M K;  3DLL G;  3CF5 G;  1YIT J;  1Q81 K;  4IO9 G;  3CCU J;  3PIP G;  1KD1 K;  3CXC I;  2OTJ J;  3CMA J;  1N8R K;  3CCJ J;  1Q7Y K;  1VQ8 J;  3CC2 J;  1KC8 K;  3I56 J;  3CCS J;  3CC7 J;  1QVF I;  1VQ4 J;  2ZJQ G;  3CCQ J;  2ZJR G;  1VQN J;  1YI2 J;  3CCM J;  1VQ6 J;  3G4S J;  1Q86 K;  1VQ5 J;  1VQM J;  1YJN J;  3J7Y K;  1JJ2 I;  1K73 K;  3CCL J;  1YHQ J;  1VQL J;  3G71 J;  2ZJP G;  1Q82 K;  3CD6 J;  3PIO G;  2QA4 J;  1NJI K;  3I55 J;  3CCV J;  1KQS I;  1YJ9 J;  4IOA G;  3OW2 I;  3CC4 J;  1VQK J;  1K8A K;  3G6E J;  1M90 K;  1M1K K;  3CPW I;  1VQ7 J;  1W2B I;  4IOC G;  1YJW J;  1VQO J;  2QEX J;  1QVG I;  1J3A A;  1VQP J;  1S72 J;  1VQ9 J; 
#chains in the Genus database with same CATH homology
 3CME J;  1YIJ J;  4V19 N;  3CCR J;  2OTL J;  3CCE J;  1K9M K;  3DLL G;  3CF5 G;  1YIT J;  1Q81 K;  4IO9 G;  3CCU J;  3PIP G;  1KD1 K;  3CXC I;  2OTJ J;  3CMA J;  1N8R K;  3CCJ J;  1Q7Y K;  1VQ8 J;  3CC2 J;  1KC8 K;  3I56 J;  3CCS J;  3CC7 J;  1QVF I;  1VQ4 J;  2ZJQ G;  3CCQ J;  2ZJR G;  1VQN J;  1YI2 J;  3CCM J;  1VQ6 J;  3G4S J;  1Q86 K;  1VQ5 J;  1VQM J;  1YJN J;  3J7Y K;  1JJ2 I;  1K73 K;  3CCL J;  1YHQ J;  1VQL J;  3G71 J;  2ZJP G;  1Q82 K;  3CD6 J;  3PIO G;  2QA4 J;  1NJI K;  3I55 J;  3CCV J;  1KQS I;  1YJ9 J;  4IOA G;  3OW2 I;  3CC4 J;  1VQK J;  1K8A K;  3G6E J;  1M90 K;  1M1K K;  3CPW I;  1VQ7 J;  1W2B I;  4IOC G;  1YJW J;  1VQO J;  2QEX J;  1QVG I;  1J3A A;  1VQP J;  1S72 J;  1VQ9 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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