3CF5W

Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 13
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2008-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3cf5W00
3CC4W 4WFBW 3CMEW 3CC2W 3CCEW 3CCQW 1YI2W 1QVGV 4U67W 1K73X 1Q86X 3CCUW 1NJIX 5DM7W 3CPWV 1Q7YX 5GAGa 1M1KX 1K9MX 4UY8Z 2QEXW 2QA4W 4IOAW 3CD6W 1BXYA 3CMAW 1VQKW 5DM6W 3J7ZZ 3G4SW 5GADa 4IO9W 1VQ8W 1S72W 5GAHa 1VQNW 3CCRW 1VQ5W 2OTJW 4IOCW 1KQSV 1YJ9W 1VQPW 1VQOW 3G6EW 3CCSW 1N8RX 3CC7W 1YJNW 3OW2V 3CXCV 5JVHW 1YITW 3I55W 1YHQW 3CCLW 1VQ6W 4WCEW 3PIPW 2OTLW 1VQ9W 5JVGW 1Q81X 1KC8X 3CF5W 1K8AX 1VQ7W 3CCJW 2ZJQW 3I56W 1Q82X 2ZJPW 1VQ4W 3CCVW 4WFNW 1KD1X 1QVFV 1VQLW 1JJ2V 1M90X 1YIJW 3G71W 4WF9W 1YJWW 5HL7W 3PIOW 1VQMW 5GAEa 3CCMW 2ZJRW 4WFAW 3DLLW 1W2BV
chains in the Genus database with same CATH superfamily
3CC4W 3W7XA 4WFBW 3CMEW 3CC2W 3CCEW 3CCQW 1RQSA 5M1AA 1YI2W 1QVGV 4U67W 1CTFA 1K73X 1Q86X 3CCUW 1MBXC 1NJIX 5DM7W 3CPWV 3O2OA 1Q7YX 3GQ0A 3W7UA 1MBVB 5GAGa 1M1KX 1DD3A 1K9MX 4UY8Z 2QEXW 2QA4W 4IOAW 5CA3A 1MBUC 1LZWA 4YKAA 5GW7A 4DKIA 3CD6W 1BXYA 4BL3A 3CMAW 1VQKW 5DM6W 3ZG0A 4BL2A 3J7ZZ 1MWTA 3G4SW 5GADa 3G19A 4IO9W 3G1BA 1VQ8W 1S72W 5GAHa 3ZFZA 1RQUA 1VQNW 1MWUA 3DNJA 3O1FA 4CJNA 3CCRW 1VQ5W 1MWSA 2OTJW 4IOCW 1KQSV 1R6QC 1YJ9W 1VQPW 1MWRA 1VQOW 3O1FB 3G6EW 3CCSW 1N8RX 3CC7W 1DD4A 1YJNW 5M19A 3CXCV 3OW2V 5JVHW 1YITW 3I55W 1YHQW 3CCLW 1VQ6W 4WCEW 3PIPW 2OTLW 1VQ9W 5JVGW 1Q81X 1KC8X 3CF5W 3GQ1A 1K8AX 1VQ7W 1VQQA 5M18A 3G3PA 3CCJW 3O2HA 2ZJQW 3I56W 1Q82X 2ZJPW 1VQ4W 3CCVW 4WFNW 3O2BA 1KD1X 2W9RA 1QVFV 1VQLW 1JJ2V 1MG9A 1M90X 1YIJW 3G71W 2WA9A 3D3IA 4WF9W 4YJMA 1YJWW 5HL7W 4YJXA 3W7SA 3PIOW 2WA8A 1VQMW 5GAEa 1RQVA 3CCMW 3ZG5A 3W7WA 4CPKA 3GW1A 2ZJRW 4WFAW 1R6OC 3DLLW 3W7TA 1W2BV
chains in the Genus database with same CATH topology
3CC4W 4WFBW 3CMEW 3CC2W 3CCEW 3CCQW 1YI2W 1QVGV 4U67W 1K73X 1Q86X 3CCUW 1NJIX 5DM7W 3CPWV 1Q7YX 5GAGa 1M1KX 1K9MX 4UY8Z 2QEXW 2QA4W 4IOAW 3CD6W 1BXYA 3CMAW 1VQKW 5DM6W 3J7ZZ 3G4SW 5GADa 4IO9W 1VQ8W 1S72W 5GAHa 1VQNW 3CCRW 1VQ5W 2OTJW 4IOCW 1KQSV 1YJ9W 1VQPW 1VQOW 3G6EW 3CCSW 1N8RX 3CC7W 1YJNW 3OW2V 3CXCV 5JVHW 1YITW 3I55W 1YHQW 3CCLW 1VQ6W 4WCEW 3PIPW 2OTLW 1VQ9W 5JVGW 1Q81X 1KC8X 3CF5W 1K8AX 1VQ7W 3CCJW 2ZJQW 3I56W 1Q82X 2ZJPW 1VQ4W 3CCVW 4WFNW 1KD1X 1QVFV 1VQLW 1JJ2V 1M90X 1YIJW 3G71W 4WF9W 1YJWW 5HL7W 3PIOW 1VQMW 5GAEa 3CCMW 2ZJRW 4WFAW 3DLLW 1W2BV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CC4 W;  4WFB W;  3CME W;  3CC2 W;  3CCE W;  3CCQ W;  1YI2 W;  1QVG V;  4U67 W;  1K73 X;  1Q86 X;  3CCU W;  1NJI X;  5DM7 W;  3CPW V;  1Q7Y X;  5GAG a;  1M1K X;  1K9M X;  4UY8 Z;  2QEX W;  2QA4 W;  4IOA W;  3CD6 W;  1BXY A;  3CMA W;  1VQK W;  5DM6 W;  3J7Z Z;  3G4S W;  5GAD a;  4IO9 W;  1VQ8 W;  1S72 W;  5GAH a;  1VQN W;  3CCR W;  1VQ5 W;  2OTJ W;  4IOC W;  1KQS V;  1YJ9 W;  1VQP W;  1VQO W;  3G6E W;  3CCS W;  1N8R X;  3CC7 W;  1YJN W;  3OW2 V;  3CXC V;  5JVH W;  1YIT W;  3I55 W;  1YHQ W;  3CCL W;  1VQ6 W;  4WCE W;  3PIP W;  2OTL W;  1VQ9 W;  5JVG W;  1Q81 X;  1KC8 X;  3CF5 W;  1K8A X;  1VQ7 W;  3CCJ W;  2ZJQ W;  3I56 W;  1Q82 X;  2ZJP W;  1VQ4 W;  3CCV W;  4WFN W;  1KD1 X;  1QVF V;  1VQL W;  1JJ2 V;  1M90 X;  1YIJ W;  3G71 W;  4WF9 W;  1YJW W;  5HL7 W;  3PIO W;  1VQM W;  5GAE a;  3CCM W;  2ZJR W;  4WFA W;  3DLL W;  1W2B V; 
#chains in the Genus database with same CATH topology
 3CC4 W;  3W7X A;  4WFB W;  3CME W;  3CC2 W;  3CCE W;  3CCQ W;  1RQS A;  5M1A A;  1YI2 W;  1QVG V;  4U67 W;  1CTF A;  1K73 X;  1Q86 X;  3CCU W;  1MBX C;  1NJI X;  5DM7 W;  3CPW V;  3O2O A;  1Q7Y X;  3GQ0 A;  3W7U A;  1MBV B;  5GAG a;  1M1K X;  1DD3 A;  1K9M X;  4UY8 Z;  2QEX W;  2QA4 W;  4IOA W;  5CA3 A;  1MBU C;  1LZW A;  4YKA A;  5GW7 A;  4DKI A;  3CD6 W;  1BXY A;  4BL3 A;  3CMA W;  1VQK W;  5DM6 W;  3ZG0 A;  4BL2 A;  3J7Z Z;  1MWT A;  3G4S W;  5GAD a;  3G19 A;  4IO9 W;  3G1B A;  1VQ8 W;  1S72 W;  5GAH a;  3ZFZ A;  1RQU A;  1VQN W;  1MWU A;  3DNJ A;  3O1F A;  4CJN A;  3CCR W;  1VQ5 W;  1MWS A;  2OTJ W;  4IOC W;  1KQS V;  1R6Q C;  1YJ9 W;  1VQP W;  1MWR A;  1VQO W;  3O1F B;  3G6E W;  3CCS W;  1N8R X;  3CC7 W;  1DD4 A;  1YJN W;  5M19 A;  3CXC V;  3OW2 V;  5JVH W;  1YIT W;  3I55 W;  1YHQ W;  3CCL W;  1VQ6 W;  4WCE W;  3PIP W;  2OTL W;  1VQ9 W;  5JVG W;  1Q81 X;  1KC8 X;  3CF5 W;  3GQ1 A;  1K8A X;  1VQ7 W;  1VQQ A;  5M18 A;  3G3P A;  3CCJ W;  3O2H A;  2ZJQ W;  3I56 W;  1Q82 X;  2ZJP W;  1VQ4 W;  3CCV W;  4WFN W;  3O2B A;  1KD1 X;  2W9R A;  1QVF V;  1VQL W;  1JJ2 V;  1MG9 A;  1M90 X;  1YIJ W;  3G71 W;  2WA9 A;  3D3I A;  4WF9 W;  4YJM A;  1YJW W;  5HL7 W;  4YJX A;  3W7S A;  3PIO W;  2WA8 A;  1VQM W;  5GAE a;  1RQV A;  3CCM W;  3ZG5 A;  3W7W A;  4CPK A;  3GW1 A;  2ZJR W;  4WFA W;  1R6O C;  3DLL W;  3W7T A;  1W2B V; 
#chains in the Genus database with same CATH homology
 3CC4 W;  4WFB W;  3CME W;  3CC2 W;  3CCE W;  3CCQ W;  1YI2 W;  1QVG V;  4U67 W;  1K73 X;  1Q86 X;  3CCU W;  1NJI X;  5DM7 W;  3CPW V;  1Q7Y X;  5GAG a;  1M1K X;  1K9M X;  4UY8 Z;  2QEX W;  2QA4 W;  4IOA W;  3CD6 W;  1BXY A;  3CMA W;  1VQK W;  5DM6 W;  3J7Z Z;  3G4S W;  5GAD a;  4IO9 W;  1VQ8 W;  1S72 W;  5GAH a;  1VQN W;  3CCR W;  1VQ5 W;  2OTJ W;  4IOC W;  1KQS V;  1YJ9 W;  1VQP W;  1VQO W;  3G6E W;  3CCS W;  1N8R X;  3CC7 W;  1YJN W;  3OW2 V;  3CXC V;  5JVH W;  1YIT W;  3I55 W;  1YHQ W;  3CCL W;  1VQ6 W;  4WCE W;  3PIP W;  2OTL W;  1VQ9 W;  5JVG W;  1Q81 X;  1KC8 X;  3CF5 W;  1K8A X;  1VQ7 W;  3CCJ W;  2ZJQ W;  3I56 W;  1Q82 X;  2ZJP W;  1VQ4 W;  3CCV W;  4WFN W;  1KD1 X;  1QVF V;  1VQL W;  1JJ2 V;  1M90 X;  1YIJ W;  3G71 W;  4WF9 W;  1YJW W;  5HL7 W;  3PIO W;  1VQM W;  5GAE a;  3CCM W;  2ZJR W;  4WFA W;  3DLL W;  1W2B V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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