3CFAL

Anemonia sulcata red fluorescent protein asrfp
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
58
structure length
58
Chain Sequence
LTETMPFRMTMEGTVNGHHFKCTGKGEGNPFEGTQDMKIEVIEGGPLPFAFDILSTSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Fluorescent protein
molecule keywords GFP-like fluorescent protein
publication title Structure of Anemonia sulcata red fluorescent protein asRFP
rcsb
source organism Anemonia sulcata
total genus 7
structure length 58
sequence length 58
chains with identical sequence M, R, S
ec nomenclature
pdb deposition date 2008-03-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.40 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 Pantoate--beta-alanine Ligase; Chain: A,domain 2 3cfaL00
2G5ZA 3CFHL 3CFFL 3LF4A 2A53A 2G3DA 2GW4A 2G2SA 3CFAL 2A56A 2A50A 2G16A 2A54A 2A52A 5EXCA
chains in the Genus database with same CATH superfamily
2A7XA 4IXJA 3CFIA 1N2IA 3UA0A 4MUJA 1N2JA 3QTTA 3IVCA 3COWA 4DDKA 4MUNA 2IECA 5G2FA 3CFHL 2RETA 3MXTA 2GW4A 3Q10A 4DDHA 3IOBA 4MUGA 1N2HA 3IMCA 1N2OA 3ISJA 5KWVA 3LE8A 3AG5A 2A52A 2X3FA 4G5FA 3CFAL 4EF6A 2EJCA 5HG0A 4EFKA 2A56A 2A50A 1MOPA 3IUBA 4MULA 4MUEA 2G16A 3CFFL 1IHOA 2G2SA 3IVGA 2A54A 1UFVA 2A84A 3AG6A 2LMEA 4MQ6A 2GR7A 2I52A 4FZJA 3LF4A 3IVXA 3UY4A 3UK2A 1N2EA 5EXCA 2A53A 3HL6A 1V8FA 3EMOA 3MUEA 2A86A 3IODA 2G5ZA 3INNA 4DDMA 1N2BA 3IUEA 3IMGA 3IMEA 3Q12A 2G3DA 1N2GA 5BW0B 3CI0K 3COVA 3COZA 4BHRA 4MUIA 4MUFA 4DE5A 3CI0I 2A88A 3IOEA 4G5YA 2GR8A 4MUKA 3IOCA 2OGFA 3COYA 4MUHA 3N8HA
chains in the Genus database with same CATH topology
2A7XA 4IXJA 1N2IA 3UA0A 4MUJA 1N2JA 3QTTA 3IVCA 3COWA 4DDKA 4MUNA 5G2FA 3CFHL 3MXTA 2GW4A 3Q10A 4DDHA 3IOBA 4MUGA 1N2HA 3IMCA 1N2OA 3ISJA 5KWVA 3LE8A 3AG5A 2A52A 2X3FA 4G5FA 3CFAL 4EF6A 2EJCA 5HG0A 4EFKA 2A56A 2A50A 1MOPA 3IUBA 4MULA 4MUEA 2G16A 3CFFL 1IHOA 2G2SA 3IVGA 2A54A 1UFVA 2A84A 3AG6A 4MQ6A 4FZJA 3LF4A 3IVXA 3UY4A 3UK2A 1N2EA 5EXCA 2A53A 3HL6A 1V8FA 3MUEA 2A86A 3IODA 2G5ZA 3INNA 4DDMA 1N2BA 3IUEA 3IMGA 3IMEA 3Q12A 2G3DA 1N2GA 3COVA 3COZA 4BHRA 4MUIA 4MUFA 4DE5A 2A88A 3IOEA 4G5YA 4MUKA 3IOCA 3COYA 4MUHA 3N8HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G5Z A;  3CFH L;  3CFF L;  3LF4 A;  2A53 A;  2G3D A;  2GW4 A;  2G2S A;  3CFA L;  2A56 A;  2A50 A;  2G16 A;  2A54 A;  2A52 A;  5EXC A; 
#chains in the Genus database with same CATH topology
 2A7X A;  4IXJ A;  3CFI A;  1N2I A;  3UA0 A;  4MUJ A;  1N2J A;  3QTT A;  3IVC A;  3COW A;  4DDK A;  4MUN A;  2IEC A;  5G2F A;  3CFH L;  2RET A;  3MXT A;  2GW4 A;  3Q10 A;  4DDH A;  3IOB A;  4MUG A;  1N2H A;  3IMC A;  1N2O A;  3ISJ A;  5KWV A;  3LE8 A;  3AG5 A;  2A52 A;  2X3F A;  4G5F A;  3CFA L;  4EF6 A;  2EJC A;  5HG0 A;  4EFK A;  2A56 A;  2A50 A;  1MOP A;  3IUB A;  4MUL A;  4MUE A;  2G16 A;  3CFF L;  1IHO A;  2G2S A;  3IVG A;  2A54 A;  1UFV A;  2A84 A;  3AG6 A;  2LME A;  4MQ6 A;  2GR7 A;  2I52 A;  4FZJ A;  3LF4 A;  3IVX A;  3UY4 A;  3UK2 A;  1N2E A;  5EXC A;  2A53 A;  3HL6 A;  1V8F A;  3EMO A;  3MUE A;  2A86 A;  3IOD A;  2G5Z A;  3INN A;  4DDM A;  1N2B A;  3IUE A;  3IMG A;  3IME A;  3Q12 A;  2G3D A;  1N2G A;  5BW0 B;  3CI0 K;  3COV A;  3COZ A;  4BHR A;  4MUI A;  4MUF A;  4DE5 A;  3CI0 I;  2A88 A;  3IOE A;  4G5Y A;  2GR8 A;  4MUK A;  3IOC A;  2OGF A;  3COY A;  4MUH A;  3N8H A; 
#chains in the Genus database with same CATH homology
 2A7X A;  4IXJ A;  1N2I A;  3UA0 A;  4MUJ A;  1N2J A;  3QTT A;  3IVC A;  3COW A;  4DDK A;  4MUN A;  5G2F A;  3CFH L;  3MXT A;  2GW4 A;  3Q10 A;  4DDH A;  3IOB A;  4MUG A;  1N2H A;  3IMC A;  1N2O A;  3ISJ A;  5KWV A;  3LE8 A;  3AG5 A;  2A52 A;  2X3F A;  4G5F A;  3CFA L;  4EF6 A;  2EJC A;  5HG0 A;  4EFK A;  2A56 A;  2A50 A;  1MOP A;  3IUB A;  4MUL A;  4MUE A;  2G16 A;  3CFF L;  1IHO A;  2G2S A;  3IVG A;  2A54 A;  1UFV A;  2A84 A;  3AG6 A;  4MQ6 A;  4FZJ A;  3LF4 A;  3IVX A;  3UY4 A;  3UK2 A;  1N2E A;  5EXC A;  2A53 A;  3HL6 A;  1V8F A;  3MUE A;  2A86 A;  3IOD A;  2G5Z A;  3INN A;  4DDM A;  1N2B A;  3IUE A;  3IMG A;  3IME A;  3Q12 A;  2G3D A;  1N2G A;  3COV A;  3COZ A;  4BHR A;  4MUI A;  4MUF A;  4DE5 A;  2A88 A;  3IOE A;  4G5Y A;  4MUK A;  3IOC A;  3COY A;  4MUH A;  3N8H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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