3CI0I

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
84
structure length
83
Chain Sequence
QHVLEEKTVAGWVAENQTALLYLMTRGQRAVRQQGESDMAGSRWYWRTTPLSTGNALQAVDIEVSLHEDFSSVIQSRRAWFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Pseudopilin GspI
publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 83
sequence length 84
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF02501 T2SSI Type II secretion system (T2SS), protein I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0I00
3CI0K 3CI0I 3CFIA 2GR8A 3EMOA 2RETA 2GR7A 5BW0B 2LMEA
chains in the Genus database with same CATH superfamily
2G5ZA 3IMGA 4MULA 2LMEA 4MQ6A 3ISJA 3N8HA 4MUNA 2RETA 1IHOA 2A88A 3COVA 3IVCA 4MUIA 3CFIA 1N2GA 2A56A 2IECA 3IOBA 1N2HA 1N2IA 3IUEA 3IODA 3CFAL 2A54A 3COYA 3AG6A 3Q10A 2GR8A 2A86A 3IMCA 1N2EA 1N2JA 4MUGA 2EJCA 2G3DA 3IVGA 4MUKA 4BHRA 2A53A 4G5FA 3CI0I 4MUFA 4IXJA 4EFKA 3AG5A 4MUEA 3COWA 3CFHL 5KWVA 1MOPA 2I52A 3LF4A 4G5YA 3UY4A 3CFFL 2G16A 3IMEA 1V8FA 3UA0A 3HL6A 3IVXA 3COZA 4DDHA 2GW4A 2A7XA 4FZJA 1N2BA 2A50A 3MXTA 3QTTA 1N2OA 4DDKA 3EMOA 3INNA 3LE8A 3MUEA 4MUHA 5EXCA 4DE5A 4DDMA 2G2SA 4EF6A 2GR7A 2OGFA 3IOCA 3IOEA 4MUJA 2X3FA 3UK2A 3IUBA 2A52A 5BW0B 5HG0A 2A84A 3CI0K 3Q12A 5G2FA 1UFVA
chains in the Genus database with same CATH topology
3CI0J 3CI0K 3CI0I 3CFIA 2GR8A 3EMOA 2RETA 2GR7A 5BW0B 2LMEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI0 K;  3CI0 I;  3CFI A;  2GR8 A;  3EMO A;  2RET A;  2GR7 A;  5BW0 B;  2LME A; 
#chains in the Genus database with same CATH topology
 2G5Z A;  3IMG A;  4MUL A;  2LME A;  4MQ6 A;  3ISJ A;  3N8H A;  4MUN A;  2RET A;  1IHO A;  2A88 A;  3COV A;  3IVC A;  4MUI A;  3CFI A;  1N2G A;  2A56 A;  2IEC A;  3IOB A;  1N2H A;  1N2I A;  3IUE A;  3IOD A;  3CFA L;  2A54 A;  3COY A;  3AG6 A;  3Q10 A;  2GR8 A;  2A86 A;  3IMC A;  1N2E A;  1N2J A;  4MUG A;  2EJC A;  2G3D A;  3IVG A;  4MUK A;  4BHR A;  2A53 A;  4G5F A;  3CI0 I;  4MUF A;  4IXJ A;  4EFK A;  3AG5 A;  4MUE A;  3COW A;  3CFH L;  5KWV A;  1MOP A;  2I52 A;  3LF4 A;  4G5Y A;  3UY4 A;  3CFF L;  2G16 A;  3IME A;  1V8F A;  3UA0 A;  3HL6 A;  3IVX A;  3COZ A;  4DDH A;  2GW4 A;  2A7X A;  4FZJ A;  1N2B A;  2A50 A;  3MXT A;  3QTT A;  1N2O A;  4DDK A;  3EMO A;  3INN A;  3LE8 A;  3MUE A;  4MUH A;  5EXC A;  4DE5 A;  4DDM A;  2G2S A;  4EF6 A;  2GR7 A;  2OGF A;  3IOC A;  3IOE A;  4MUJ A;  2X3F A;  3UK2 A;  3IUB A;  2A52 A;  5BW0 B;  5HG0 A;  2A84 A;  3CI0 K;  3Q12 A;  5G2F A;  1UFV A; 
#chains in the Genus database with same CATH homology
 3CI0 J;  3CI0 K;  3CI0 I;  3CFI A;  2GR8 A;  3EMO A;  2RET A;  2GR7 A;  5BW0 B;  2LME A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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