3CIRC

E. coli quinol fumarate reductase frda t234a mutation
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
130
structure length
130
Chain Sequence
TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Fumarate reductase flavoprotein subunit
total genus 41
structure length 130
sequence length 130
chains with identical sequence O
ec nomenclature
pdb deposition date 2008-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02300 Fumarate_red_C Fumarate reductase subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 3cirC00
3P4QD 3AE7D 4YTMC 3AEEC 3AE4C 2WU5D 2WS3D 1ZOYD 2WDVD 3AE1D 1L0VC 2WQYD 3VR9C 3VRAD 2ACZC 3SFDD 3AEGD 3AE6C 3AECD 4YSXD 3AEBC 1YQ4C 3AE8D 3CIRC 3AEAC 2WP9C 5C2TD 2BS3C 4YT0D 2WDQD 1NENC 3AE3C 1KF6D 2B76C 3VRBC 3VR8D 3AEDC 3P4SD 1E7PC 1YQ3D 4KX6C 4YSYC 4YSZD 2FBWC 3P4QC 2BS2C 3AE7C 3P4RD 2WDRD 2WU5C 2WU2D 2WS3C 1ZOYC 2WDVC 3AE1C 2WQYC 1QLBC 4YTPD 3AE2C 3VRAC 3SFDC 3AEFD 3AEGC 2BS4C 1KFYD 3AECC 2H88D 4YSXC 2H89D 3ABVD 3AE5D 1NEKD 3AE8C 5C3JD 4YTND 5C2TC 4YXDD 4YT0C 2WDQC 3SFED 3ABVC 1KF6C 1NEKC 3AE9D 1ZP0D 3VR8C 3P4SC 1YQ3C 3AE2D 4YSZC 4YTMD 3AEED 3AE4D 3P4RC 1L0VD 3VR9D 2WDRC 2WU2C 2ACZD 3AE6D 4YTPC 3AEFC 1KFYC 3P4PD 2H88C 3AEBD 1YQ4D 3CIRD 2H89C 3AEAD 3AE5C 2WP9D 4YTNC 5C3JC 1NEND 3AE3D 2B76D 3P4PC 3VRBD 4YXDC 3AEDD 3SFEC 4KX6D 3AE9C 4YSYD 1ZP0C 2FBWD
chains in the Genus database with same CATH superfamily
3P4QD 3AE7D 4YTMC 3AEEC 3AE4C 2WU5D 2WS3D 1ZOYD 2WDVD 3AE1D 1L0VC 2WQYD 3VR9C 3VRAD 2ACZC 3SFDD 3AEGD 3AE6C 3AECD 4YSXD 3AEBC 4LDTA 1YQ4C 3AE8D 3CIRC 3AEAC 2WP9C 5C2TD 2BS3C 4YT0D 2WDQD 1NENC 3AE3C 1KF6D 2B76C 3VRBC 2ZFYA 3VR8D 3AEDC 3P4SD 1E7PC 1YQ3D 4KX6C 4YSYC 4YSZD 2FBWC 3P4QC 1TFFA 2BS2C 3AE7C 3P4RD 2WDRD 2WU5C 2WU2D 2WS3C 1ZOYC 2WDVC 3AE1C 2WQYC 1QLBC 4YTPD 3AE2C 3VRAC 3SFDC 3AEFD 3AEGC 2BS4C 4I6LA 1KFYD 3AECC 2H88D 4YSXC 2H89D 3ABVD 4DDIA 3AE5D 1NEKD 3AE8C 5C3JD 4YTND 5C2TC 4YXDD 4YT0C 2WDQC 3SFED 3ABVC 1KF6C 4FJVA 1NEKC 3AE9D 1ZP0D 3VR8C 3P4SC 1YQ3C 3AE2D 4YSZC 4DDGA 4YTMD 3AEED 3AE4D 3P4RC 4DHJA 1L0VD 3VR9D 2WDRC 2WU2C 2ACZD 4DHZA 3AE6D 4YTPC 3AEFC 1KFYC 3P4PD 2H88C 3AEBD 1YQ4D 3CIRD 4DHIB 2H89C 3AEAD 3AE5C 2WP9D 4YTNC 5C3JC 1NEND 3AE3D 2B76D 3P4PC 3VRBD 4YXDC 3AEDD 3SFEC 3VONA 4KX6D 3AE9C 4YSYD 1ZP0C 2FBWD
chains in the Genus database with same CATH topology
3P4QD 3AE7D 4YTMC 3AEEC 3AE4C 2WU5D 2WS3D 1ZOYD 2WDVD 3AE1D 1L0VC 2WQYD 3VR9C 3VRAD 2ACZC 3SFDD 3AEGD 3AE6C 3AECD 4YSXD 3AEBC 1YQ4C 3AE8D 3CIRC 3AEAC 2WP9C 5C2TD 2BS3C 4YT0D 2WDQD 1NENC 3AE3C 1KF6D 2B76C 3VRBC 3VR8D 3AEDC 3P4SD 1E7PC 1YQ3D 4KX6C 4YSYC 4YSZD 2FBWC 3P4QC 2BS2C 3AE7C 3P4RD 2WDRD 2WU5C 2WU2D 2WS3C 1ZOYC 2WDVC 3AE1C 2WQYC 1QLBC 4YTPD 3AE2C 3VRAC 3SFDC 3AEFD 3AEGC 2BS4C 1KFYD 3AECC 2H88D 4YSXC 2H89D 3ABVD 3AE5D 1NEKD 3AE8C 5C3JD 4YTND 5C2TC 4YXDD 4YT0C 2WDQC 3SFED 3ABVC 1KF6C 1NEKC 3AE9D 1ZP0D 3VR8C 3P4SC 1YQ3C 3AE2D 4YSZC 4YTMD 3AEED 3AE4D 3P4RC 1L0VD 3VR9D 2WDRC 2WU2C 2ACZD 3AE6D 4YTPC 3AEFC 1KFYC 3P4PD 2H88C 3AEBD 1YQ4D 3CIRD 2H89C 3AEAD 3AE5C 2WP9D 4YTNC 5C3JC 1NEND 3AE3D 2B76D 3P4PC 3VRBD 4YXDC 3AEDD 3SFEC 4KX6D 3AE9C 4YSYD 1ZP0C 2FBWD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P4Q D;  3AE7 D;  4YTM C;  3AEE C;  3AE4 C;  2WU5 D;  2WS3 D;  1ZOY D;  2WDV D;  3AE1 D;  1L0V C;  2WQY D;  3VR9 C;  3VRA D;  2ACZ C;  3SFD D;  3AEG D;  3AE6 C;  3AEC D;  4YSX D;  3AEB C;  1YQ4 C;  3AE8 D;  3CIR C;  3AEA C;  2WP9 C;  5C2T D;  2BS3 C;  4YT0 D;  2WDQ D;  1NEN C;  3AE3 C;  1KF6 D;  2B76 C;  3VRB C;  3VR8 D;  3AED C;  3P4S D;  1E7P C;  1YQ3 D;  4KX6 C;  4YSY C;  4YSZ D;  2FBW C;  3P4Q C;  2BS2 C;  3AE7 C;  3P4R D;  2WDR D;  2WU5 C;  2WU2 D;  2WS3 C;  1ZOY C;  2WDV C;  3AE1 C;  2WQY C;  1QLB C;  4YTP D;  3AE2 C;  3VRA C;  3SFD C;  3AEF D;  3AEG C;  2BS4 C;  1KFY D;  3AEC C;  2H88 D;  4YSX C;  2H89 D;  3ABV D;  3AE5 D;  1NEK D;  3AE8 C;  5C3J D;  4YTN D;  5C2T C;  4YXD D;  4YT0 C;  2WDQ C;  3SFE D;  3ABV C;  1KF6 C;  1NEK C;  3AE9 D;  1ZP0 D;  3VR8 C;  3P4S C;  1YQ3 C;  3AE2 D;  4YSZ C;  4YTM D;  3AEE D;  3AE4 D;  3P4R C;  1L0V D;  3VR9 D;  2WDR C;  2WU2 C;  2ACZ D;  3AE6 D;  4YTP C;  3AEF C;  1KFY C;  3P4P D;  2H88 C;  3AEB D;  1YQ4 D;  3CIR D;  2H89 C;  3AEA D;  3AE5 C;  2WP9 D;  4YTN C;  5C3J C;  1NEN D;  3AE3 D;  2B76 D;  3P4P C;  3VRB D;  4YXD C;  3AED D;  3SFE C;  4KX6 D;  3AE9 C;  4YSY D;  1ZP0 C;  2FBW D; 
#chains in the Genus database with same CATH topology
 3P4Q D;  3AE7 D;  4YTM C;  3AEE C;  3AE4 C;  2WU5 D;  2WS3 D;  1ZOY D;  2WDV D;  3AE1 D;  1L0V C;  2WQY D;  3VR9 C;  3VRA D;  2ACZ C;  3SFD D;  3AEG D;  3AE6 C;  3AEC D;  4YSX D;  3AEB C;  4LDT A;  1YQ4 C;  3AE8 D;  3CIR C;  3AEA C;  2WP9 C;  5C2T D;  2BS3 C;  4YT0 D;  2WDQ D;  1NEN C;  3AE3 C;  1KF6 D;  2B76 C;  3VRB C;  2ZFY A;  3VR8 D;  3AED C;  3P4S D;  1E7P C;  1YQ3 D;  4KX6 C;  4YSY C;  4YSZ D;  2FBW C;  3P4Q C;  1TFF A;  2BS2 C;  3AE7 C;  3P4R D;  2WDR D;  2WU5 C;  2WU2 D;  2WS3 C;  1ZOY C;  2WDV C;  3AE1 C;  2WQY C;  1QLB C;  4YTP D;  3AE2 C;  3VRA C;  3SFD C;  3AEF D;  3AEG C;  2BS4 C;  4I6L A;  1KFY D;  3AEC C;  2H88 D;  4YSX C;  2H89 D;  3ABV D;  4DDI A;  3AE5 D;  1NEK D;  3AE8 C;  5C3J D;  4YTN D;  5C2T C;  4YXD D;  4YT0 C;  2WDQ C;  3SFE D;  3ABV C;  1KF6 C;  4FJV A;  1NEK C;  3AE9 D;  1ZP0 D;  3VR8 C;  3P4S C;  1YQ3 C;  3AE2 D;  4YSZ C;  4DDG A;  4YTM D;  3AEE D;  3AE4 D;  3P4R C;  4DHJ A;  1L0V D;  3VR9 D;  2WDR C;  2WU2 C;  2ACZ D;  4DHZ A;  3AE6 D;  4YTP C;  3AEF C;  1KFY C;  3P4P D;  2H88 C;  3AEB D;  1YQ4 D;  3CIR D;  4DHI B;  2H89 C;  3AEA D;  3AE5 C;  2WP9 D;  4YTN C;  5C3J C;  1NEN D;  3AE3 D;  2B76 D;  3P4P C;  3VRB D;  4YXD C;  3AED D;  3SFE C;  3VON A;  4KX6 D;  3AE9 C;  4YSY D;  1ZP0 C;  2FBW D; 
#chains in the Genus database with same CATH homology
 3P4Q D;  3AE7 D;  4YTM C;  3AEE C;  3AE4 C;  2WU5 D;  2WS3 D;  1ZOY D;  2WDV D;  3AE1 D;  1L0V C;  2WQY D;  3VR9 C;  3VRA D;  2ACZ C;  3SFD D;  3AEG D;  3AE6 C;  3AEC D;  4YSX D;  3AEB C;  1YQ4 C;  3AE8 D;  3CIR C;  3AEA C;  2WP9 C;  5C2T D;  2BS3 C;  4YT0 D;  2WDQ D;  1NEN C;  3AE3 C;  1KF6 D;  2B76 C;  3VRB C;  3VR8 D;  3AED C;  3P4S D;  1E7P C;  1YQ3 D;  4KX6 C;  4YSY C;  4YSZ D;  2FBW C;  3P4Q C;  2BS2 C;  3AE7 C;  3P4R D;  2WDR D;  2WU5 C;  2WU2 D;  2WS3 C;  1ZOY C;  2WDV C;  3AE1 C;  2WQY C;  1QLB C;  4YTP D;  3AE2 C;  3VRA C;  3SFD C;  3AEF D;  3AEG C;  2BS4 C;  1KFY D;  3AEC C;  2H88 D;  4YSX C;  2H89 D;  3ABV D;  3AE5 D;  1NEK D;  3AE8 C;  5C3J D;  4YTN D;  5C2T C;  4YXD D;  4YT0 C;  2WDQ C;  3SFE D;  3ABV C;  1KF6 C;  1NEK C;  3AE9 D;  1ZP0 D;  3VR8 C;  3P4S C;  1YQ3 C;  3AE2 D;  4YSZ C;  4YTM D;  3AEE D;  3AE4 D;  3P4R C;  1L0V D;  3VR9 D;  2WDR C;  2WU2 C;  2ACZ D;  3AE6 D;  4YTP C;  3AEF C;  1KFY C;  3P4P D;  2H88 C;  3AEB D;  1YQ4 D;  3CIR D;  2H89 C;  3AEA D;  3AE5 C;  2WP9 D;  4YTN C;  5C3J C;  1NEN D;  3AE3 D;  2B76 D;  3P4P C;  3VRB D;  4YXD C;  3AED D;  3SFE C;  4KX6 D;  3AE9 C;  4YSY D;  1ZP0 C;  2FBW D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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