3CJBG

Actin dimer cross-linked by v. cholerae martx toxin and complexed with gelsolin-segment 1
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin, alpha skeletal muscle
publication title Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.
pubmed doi rcsb
source organism Homo sapiens
total genus 36
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2008-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3cjbG00
1MDUA 2W0IA 1F7SA 3EG9A 2FF6G 3CJBG 3EFOA 1SVRA 2FH2A 1D4XG 1WFSA 5IVUA 1TMWA 3FFKA 2HD7A 4KEFA 5KYXB 3FFNA 1CFYA 1C0GS 2NUPA 3A5LS 1EQYS 5FAEA 1M4JA 3CIPG 1C0FS 4Z94G 3EGDA 4PKHB 1X67A 4CBXG 1T2LA 4KEEA 1YAGG 5KYNA 1ESVS 4JD2H 5KYWA 1T44G 2LXXA 2FGHA 3FG6A 5KYYB 1NM1G 4LIZA 4PKGG 5HVKB 1QPVA 1COFA 2FH1A 3EH2A 1PD0A 2LJ8A 4KEDA 2XF1A 2NUTB 1M2VB 3FG7A 5DD2A 5HVKD 1V6FA 4PKIG 5KYYA 1AK6A 1UDMA 1KCQA 3Q2BA 1NMDG 1J72A 1NLVG 2VIKA 2D8BA 1Q8XA 5KYUB 1TVJA 5A1MA 1PCXA 5KYXA 2QTVA 1P8XA 2MV2A 3EGXB 1M2VA 3EH1A 3TU5B 3EG9B 3EFOB 3L50A 4CBWG 3A5MS 2KVKA 2I2QA 1P8ZG 1AK7A 3CJCG 2MP4A 1NPHA 1DEJS 4S10C 5L6WC 2LLFA 2MOTA 2NUPB 5FAFA 1SVYA 2FH3A 1WM4A 1SVQA 3EGDB 1VFQA 1JHWA 2VACA 3CI5G 1CNUA 1T3XA 1WNJA 4BEX1 3A5NS 1RGIG 5KYWB 2NUTA 1AHQA 2FH4A 1VKKA 2VILA 1YVNG 2L72A 1M2OA 1HQZ1 4CBUG 1H1VG 3A5OS 5KYUA 2FF3A 2XFAA 1T3YA 3DAWB 3EGXA 1Q8GA 1D0NA 1PD1A
chains in the Genus database with same CATH superfamily
1MDUA 2W0IA 1F7SA 3EG9A 2FF6G 3CJBG 3EFOA 1SVRA 2FH2A 1D4XG 1WFSA 5IVUA 1TMWA 3FFKA 2HD7A 4KEFA 5KYXB 3FFNA 1CFYA 1C0GS 2NUPA 3A5LS 1EQYS 5FAEA 1M4JA 3CIPG 1C0FS 4Z94G 3EGDA 4PKHB 1X67A 4CBXG 1T2LA 4KEEA 1YAGG 5KYNA 1ESVS 4JD2H 5KYWA 1T44G 2LXXA 2FGHA 3FG6A 5KYYB 1NM1G 4LIZA 4PKGG 5HVKB 1QPVA 1COFA 2FH1A 3EH2A 1PD0A 2LJ8A 4KEDA 2XF1A 2NUTB 1M2VB 3FG7A 5DD2A 5HVKD 1V6FA 4PKIG 5KYYA 1AK6A 1UDMA 1KCQA 3Q2BA 1NMDG 1J72A 1NLVG 2VIKA 2D8BA 1Q8XA 5KYUB 1TVJA 5A1MA 1PCXA 5KYXA 2QTVA 1P8XA 2MV2A 3EGXB 1M2VA 3EH1A 3TU5B 3EG9B 3EFOB 3L50A 4CBWG 3A5MS 2KVKA 2I2QA 1P8ZG 1AK7A 3CJCG 2MP4A 1NPHA 1DEJS 4S10C 5L6WC 2LLFA 2MOTA 2NUPB 5FAFA 1SVYA 2FH3A 1WM4A 1SVQA 3EGDB 1VFQA 1JHWA 2VACA 3CI5G 1CNUA 1T3XA 1WNJA 4BEX1 3A5NS 1RGIG 5KYWB 2NUTA 1AHQA 2FH4A 1VKKA 2VILA 1YVNG 2L72A 1M2OA 1HQZ1 4CBUG 1H1VG 3A5OS 5KYUA 2FF3A 3DA7A 2XFAA 1T3YA 3DAWB 3EGXA 1Q8GA 1D0NA 1PD1A
chains in the Genus database with same CATH topology
1MDUA 2W0IA 1F7SA 3EG9A 2FF6G 3CJBG 3EFOA 1SVRA 2FH2A 1D4XG 1WFSA 5IVUA 1TMWA 3FFKA 2HD7A 4KEFA 5KYXB 3FFNA 1CFYA 1C0GS 2NUPA 3A5LS 1EQYS 5FAEA 1M4JA 3CIPG 1C0FS 4Z94G 3EGDA 4PKHB 1X67A 4CBXG 1T2LA 4KEEA 1YAGG 5KYNA 1ESVS 4JD2H 5KYWA 1T44G 2LXXA 2FGHA 3FG6A 5KYYB 1NM1G 4LIZA 4PKGG 5HVKB 1QPVA 1COFA 2FH1A 3EH2A 1PD0A 2LJ8A 4KEDA 2XF1A 2NUTB 1M2VB 3FG7A 5DD2A 5HVKD 1V6FA 4PKIG 5KYYA 1AK6A 1UDMA 1KCQA 3Q2BA 1NMDG 1J72A 1NLVG 2VIKA 2D8BA 1Q8XA 5KYUB 1TVJA 5A1MA 1PCXA 5KYXA 2QTVA 1P8XA 2MV2A 3EGXB 1M2VA 3EH1A 3TU5B 3EG9B 3EFOB 3L50A 4CBWG 3A5MS 2KVKA 2I2QA 1P8ZG 1AK7A 3CJCG 2MP4A 1NPHA 1DEJS 4S10C 5L6WC 2LLFA 2MOTA 2NUPB 5FAFA 1SVYA 2FH3A 1WM4A 1SVQA 3EGDB 1VFQA 1JHWA 2VACA 3CI5G 1CNUA 1T3XA 1WNJA 4BEX1 3A5NS 1RGIG 5KYWB 2NUTA 1AHQA 2FH4A 1VKKA 2VILA 1YVNG 2L72A 1M2OA 1HQZ1 4CBUG 1H1VG 3A5OS 5KYUA 2FF3A 3DA7A 2XFAA 1T3YA 3DAWB 3EGXA 1Q8GA 1D0NA 1PD1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MDU A;  2W0I A;  1F7S A;  3EG9 A;  2FF6 G;  3CJB G;  3EFO A;  1SVR A;  2FH2 A;  1D4X G;  1WFS A;  5IVU A;  1TMW A;  3FFK A;  2HD7 A;  4KEF A;  5KYX B;  3FFN A;  1CFY A;  1C0G S;  2NUP A;  3A5L S;  1EQY S;  5FAE A;  1M4J A;  3CIP G;  1C0F S;  4Z94 G;  3EGD A;  4PKH B;  1X67 A;  4CBX G;  1T2L A;  4KEE A;  1YAG G;  5KYN A;  1ESV S;  4JD2 H;  5KYW A;  1T44 G;  2LXX A;  2FGH A;  3FG6 A;  5KYY B;  1NM1 G;  4LIZ A;  4PKG G;  5HVK B;  1QPV A;  1COF A;  2FH1 A;  3EH2 A;  1PD0 A;  2LJ8 A;  4KED A;  2XF1 A;  2NUT B;  1M2V B;  3FG7 A;  5DD2 A;  5HVK D;  1V6F A;  4PKI G;  5KYY A;  1AK6 A;  1UDM A;  1KCQ A;  3Q2B A;  1NMD G;  1J72 A;  1NLV G;  2VIK A;  2D8B A;  1Q8X A;  5KYU B;  1TVJ A;  5A1M A;  1PCX A;  5KYX A;  2QTV A;  1P8X A;  2MV2 A;  3EGX B;  1M2V A;  3EH1 A;  3TU5 B;  3EG9 B;  3EFO B;  3L50 A;  4CBW G;  3A5M S;  2KVK A;  2I2Q A;  1P8Z G;  1AK7 A;  3CJC G;  2MP4 A;  1NPH A;  1DEJ S;  4S10 C;  5L6W C;  2LLF A;  2MOT A;  2NUP B;  5FAF A;  1SVY A;  2FH3 A;  1WM4 A;  1SVQ A;  3EGD B;  1VFQ A;  1JHW A;  2VAC A;  3CI5 G;  1CNU A;  1T3X A;  1WNJ A;  4BEX 1;  3A5N S;  1RGI G;  5KYW B;  2NUT A;  1AHQ A;  2FH4 A;  1VKK A;  2VIL A;  1YVN G;  2L72 A;  1M2O A;  1HQZ 1;  4CBU G;  1H1V G;  3A5O S;  5KYU A;  2FF3 A;  2XFA A;  1T3Y A;  3DAW B;  3EGX A;  1Q8G A;  1D0N A;  1PD1 A; 
#chains in the Genus database with same CATH topology
 1MDU A;  2W0I A;  1F7S A;  3EG9 A;  2FF6 G;  3CJB G;  3EFO A;  1SVR A;  2FH2 A;  1D4X G;  1WFS A;  5IVU A;  1TMW A;  3FFK A;  2HD7 A;  4KEF A;  5KYX B;  3FFN A;  1CFY A;  1C0G S;  2NUP A;  3A5L S;  1EQY S;  5FAE A;  1M4J A;  3CIP G;  1C0F S;  4Z94 G;  3EGD A;  4PKH B;  1X67 A;  4CBX G;  1T2L A;  4KEE A;  1YAG G;  5KYN A;  1ESV S;  4JD2 H;  5KYW A;  1T44 G;  2LXX A;  2FGH A;  3FG6 A;  5KYY B;  1NM1 G;  4LIZ A;  4PKG G;  5HVK B;  1QPV A;  1COF A;  2FH1 A;  3EH2 A;  1PD0 A;  2LJ8 A;  4KED A;  2XF1 A;  2NUT B;  1M2V B;  3FG7 A;  5DD2 A;  5HVK D;  1V6F A;  4PKI G;  5KYY A;  1AK6 A;  1UDM A;  1KCQ A;  3Q2B A;  1NMD G;  1J72 A;  1NLV G;  2VIK A;  2D8B A;  1Q8X A;  5KYU B;  1TVJ A;  5A1M A;  1PCX A;  5KYX A;  2QTV A;  1P8X A;  2MV2 A;  3EGX B;  1M2V A;  3EH1 A;  3TU5 B;  3EG9 B;  3EFO B;  3L50 A;  4CBW G;  3A5M S;  2KVK A;  2I2Q A;  1P8Z G;  1AK7 A;  3CJC G;  2MP4 A;  1NPH A;  1DEJ S;  4S10 C;  5L6W C;  2LLF A;  2MOT A;  2NUP B;  5FAF A;  1SVY A;  2FH3 A;  1WM4 A;  1SVQ A;  3EGD B;  1VFQ A;  1JHW A;  2VAC A;  3CI5 G;  1CNU A;  1T3X A;  1WNJ A;  4BEX 1;  3A5N S;  1RGI G;  5KYW B;  2NUT A;  1AHQ A;  2FH4 A;  1VKK A;  2VIL A;  1YVN G;  2L72 A;  1M2O A;  1HQZ 1;  4CBU G;  1H1V G;  3A5O S;  5KYU A;  2FF3 A;  3DA7 A;  2XFA A;  1T3Y A;  3DAW B;  3EGX A;  1Q8G A;  1D0N A;  1PD1 A; 
#chains in the Genus database with same CATH homology
 1MDU A;  2W0I A;  1F7S A;  3EG9 A;  2FF6 G;  3CJB G;  3EFO A;  1SVR A;  2FH2 A;  1D4X G;  1WFS A;  5IVU A;  1TMW A;  3FFK A;  2HD7 A;  4KEF A;  5KYX B;  3FFN A;  1CFY A;  1C0G S;  2NUP A;  3A5L S;  1EQY S;  5FAE A;  1M4J A;  3CIP G;  1C0F S;  4Z94 G;  3EGD A;  4PKH B;  1X67 A;  4CBX G;  1T2L A;  4KEE A;  1YAG G;  5KYN A;  1ESV S;  4JD2 H;  5KYW A;  1T44 G;  2LXX A;  2FGH A;  3FG6 A;  5KYY B;  1NM1 G;  4LIZ A;  4PKG G;  5HVK B;  1QPV A;  1COF A;  2FH1 A;  3EH2 A;  1PD0 A;  2LJ8 A;  4KED A;  2XF1 A;  2NUT B;  1M2V B;  3FG7 A;  5DD2 A;  5HVK D;  1V6F A;  4PKI G;  5KYY A;  1AK6 A;  1UDM A;  1KCQ A;  3Q2B A;  1NMD G;  1J72 A;  1NLV G;  2VIK A;  2D8B A;  1Q8X A;  5KYU B;  1TVJ A;  5A1M A;  1PCX A;  5KYX A;  2QTV A;  1P8X A;  2MV2 A;  3EGX B;  1M2V A;  3EH1 A;  3TU5 B;  3EG9 B;  3EFO B;  3L50 A;  4CBW G;  3A5M S;  2KVK A;  2I2Q A;  1P8Z G;  1AK7 A;  3CJC G;  2MP4 A;  1NPH A;  1DEJ S;  4S10 C;  5L6W C;  2LLF A;  2MOT A;  2NUP B;  5FAF A;  1SVY A;  2FH3 A;  1WM4 A;  1SVQ A;  3EGD B;  1VFQ A;  1JHW A;  2VAC A;  3CI5 G;  1CNU A;  1T3X A;  1WNJ A;  4BEX 1;  3A5N S;  1RGI G;  5KYW B;  2NUT A;  1AHQ A;  2FH4 A;  1VKK A;  2VIL A;  1YVN G;  2L72 A;  1M2O A;  1HQZ 1;  4CBU G;  1H1V G;  3A5O S;  5KYU A;  2FF3 A;  3DA7 A;  2XFA A;  1T3Y A;  3DAW B;  3EGX A;  1Q8G A;  1D0N A;  1PD1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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