3CJCG

Actin dimer cross-linked by v. cholerae martx toxin and complexed with dnase i and gelsolin-segment 1
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein/hydrolase
molecule keywords Actin, alpha skeletal muscle
publication title Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.
pubmed doi rcsb
source organism Homo sapiens
total genus 30
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2008-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3cjcG00
4LIZA 3EG9B 3CJBG 3EGXB 1T44G 2MP4A 1SVQA 4Z94G 1YVNG 4PKIG 1T3XA 1C0GS 1NMDG 5DD2A 5KYUA 2NUPB 2KVKA 3A5OS 1EQYS 5HVKD 1MDUA 5L6WC 1QPVA 1M2VB 5FAEA 4BEX1 1C0FS 2VIKA 3A5LS 1H1VG 3EG9A 3FG6A 2FH1A 5KYNA 3EGXA 2FH2A 1NLVG 2FF3A 2I2QA 4KEEA 1NM1G 3EFOB 1PD1A 5KYWB 1AK6A 1T3YA 1SVYA 5KYYB 1D0NA 3A5NS 1DEJS 3EH1A 2NUPA 3CJCG 1SVRA 1Q8XA 4KEDA 1M2VA 1ESVS 1HQZ1 2NUTA 1F7SA 1YAGG 2QTVA 1WNJA 2FF6G 5IVUA 2VACA 1P8XA 5FAFA 2NUTB 4CBWG 3EFOA 2XF1A 1CNUA 3CIPG 1WM4A 5KYWA 5KYYA 4PKGG 1UDMA 1AHQA 1Q8GA 2W0IA 3A5MS 2FH3A 3FG7A 2FH4A 5KYXA 1PD0A 2HD7A 1CFYA 5KYXB 3Q2BA 2L72A 1NPHA 1J72A 1VKKA 4CBUG 1T2LA 4KEFA 3EGDB 2LJ8A 4S10C 3TU5B 1KCQA 1M4JA 3FFNA 1X67A 4JD2H 2VILA 2XFAA 1M2OA 1TMWA 3FFKA 1COFA 2LLFA 1AK7A 1V6FA 1JHWA 3CI5G 2D8BA 1TVJA 2MOTA 1VFQA 4CBXG 2LXXA 1D4XG 2FGHA 1RGIG 3DAWB 3EGDA 1P8ZG 5A1MA 5KYUB 2MV2A 4PKHB 5HVKB 3EH2A 1PCXA 1WFSA 3L50A
chains in the Genus database with same CATH superfamily
4LIZA 3EG9B 3CJBG 3EGXB 1T44G 2MP4A 1SVQA 4Z94G 1YVNG 4PKIG 1T3XA 1C0GS 1NMDG 5DD2A 5KYUA 2NUPB 2KVKA 3A5OS 1EQYS 5HVKD 1MDUA 5L6WC 1QPVA 1M2VB 5FAEA 4BEX1 1C0FS 2VIKA 3A5LS 1H1VG 3EG9A 3FG6A 2FH1A 5KYNA 3EGXA 2FH2A 1NLVG 2FF3A 2I2QA 4KEEA 1NM1G 3EFOB 1PD1A 5KYWB 1AK6A 1T3YA 1SVYA 5KYYB 1D0NA 3A5NS 1DEJS 3EH1A 2NUPA 3CJCG 1SVRA 1Q8XA 4KEDA 1M2VA 1ESVS 1HQZ1 2NUTA 1F7SA 1YAGG 2QTVA 1WNJA 2FF6G 5IVUA 2VACA 1P8XA 5FAFA 2NUTB 4CBWG 3EFOA 2XF1A 1CNUA 3CIPG 3DA7A 1WM4A 5KYWA 5KYYA 4PKGG 1UDMA 1AHQA 1Q8GA 2W0IA 3A5MS 2FH3A 3FG7A 2FH4A 5KYXA 1PD0A 2HD7A 1CFYA 5KYXB 3Q2BA 2L72A 1NPHA 1J72A 1VKKA 4CBUG 1T2LA 4KEFA 3EGDB 2LJ8A 4S10C 3TU5B 1KCQA 1M4JA 3FFNA 1X67A 4JD2H 2VILA 2XFAA 1M2OA 1TMWA 3FFKA 1COFA 2LLFA 1AK7A 1V6FA 1JHWA 3CI5G 2D8BA 1TVJA 2MOTA 1VFQA 4CBXG 2LXXA 1D4XG 2FGHA 1RGIG 3DAWB 3EGDA 1P8ZG 5A1MA 5KYUB 2MV2A 4PKHB 5HVKB 3EH2A 1PCXA 1WFSA 3L50A
chains in the Genus database with same CATH topology
4LIZA 3EG9B 3CJBG 3EGXB 1T44G 2MP4A 1SVQA 4Z94G 1YVNG 4PKIG 1T3XA 1C0GS 1NMDG 5DD2A 5KYUA 2NUPB 2KVKA 3A5OS 1EQYS 5HVKD 1MDUA 5L6WC 1QPVA 1M2VB 5FAEA 4BEX1 1C0FS 2VIKA 3A5LS 1H1VG 3EG9A 3FG6A 2FH1A 5KYNA 3EGXA 2FH2A 1NLVG 2FF3A 2I2QA 4KEEA 1NM1G 3EFOB 1PD1A 5KYWB 1AK6A 1T3YA 1SVYA 5KYYB 1D0NA 3A5NS 1DEJS 3EH1A 2NUPA 3CJCG 1SVRA 1Q8XA 4KEDA 1M2VA 1ESVS 1HQZ1 2NUTA 1F7SA 1YAGG 2QTVA 1WNJA 2FF6G 5IVUA 2VACA 1P8XA 5FAFA 2NUTB 4CBWG 3EFOA 2XF1A 1CNUA 3CIPG 3DA7A 1WM4A 5KYWA 5KYYA 4PKGG 1UDMA 1AHQA 1Q8GA 2W0IA 3A5MS 2FH3A 3FG7A 2FH4A 5KYXA 1PD0A 2HD7A 1CFYA 5KYXB 3Q2BA 2L72A 1NPHA 1J72A 1VKKA 4CBUG 1T2LA 4KEFA 3EGDB 2LJ8A 4S10C 3TU5B 1KCQA 1M4JA 3FFNA 1X67A 4JD2H 2VILA 2XFAA 1M2OA 1TMWA 3FFKA 1COFA 2LLFA 1AK7A 1V6FA 1JHWA 3CI5G 2D8BA 1TVJA 2MOTA 1VFQA 4CBXG 2LXXA 1D4XG 2FGHA 1RGIG 3DAWB 3EGDA 1P8ZG 5A1MA 5KYUB 2MV2A 4PKHB 5HVKB 3EH2A 1PCXA 1WFSA 3L50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LIZ A;  3EG9 B;  3CJB G;  3EGX B;  1T44 G;  2MP4 A;  1SVQ A;  4Z94 G;  1YVN G;  4PKI G;  1T3X A;  1C0G S;  1NMD G;  5DD2 A;  5KYU A;  2NUP B;  2KVK A;  3A5O S;  1EQY S;  5HVK D;  1MDU A;  5L6W C;  1QPV A;  1M2V B;  5FAE A;  4BEX 1;  1C0F S;  2VIK A;  3A5L S;  1H1V G;  3EG9 A;  3FG6 A;  2FH1 A;  5KYN A;  3EGX A;  2FH2 A;  1NLV G;  2FF3 A;  2I2Q A;  4KEE A;  1NM1 G;  3EFO B;  1PD1 A;  5KYW B;  1AK6 A;  1T3Y A;  1SVY A;  5KYY B;  1D0N A;  3A5N S;  1DEJ S;  3EH1 A;  2NUP A;  3CJC G;  1SVR A;  1Q8X A;  4KED A;  1M2V A;  1ESV S;  1HQZ 1;  2NUT A;  1F7S A;  1YAG G;  2QTV A;  1WNJ A;  2FF6 G;  5IVU A;  2VAC A;  1P8X A;  5FAF A;  2NUT B;  4CBW G;  3EFO A;  2XF1 A;  1CNU A;  3CIP G;  1WM4 A;  5KYW A;  5KYY A;  4PKG G;  1UDM A;  1AHQ A;  1Q8G A;  2W0I A;  3A5M S;  2FH3 A;  3FG7 A;  2FH4 A;  5KYX A;  1PD0 A;  2HD7 A;  1CFY A;  5KYX B;  3Q2B A;  2L72 A;  1NPH A;  1J72 A;  1VKK A;  4CBU G;  1T2L A;  4KEF A;  3EGD B;  2LJ8 A;  4S10 C;  3TU5 B;  1KCQ A;  1M4J A;  3FFN A;  1X67 A;  4JD2 H;  2VIL A;  2XFA A;  1M2O A;  1TMW A;  3FFK A;  1COF A;  2LLF A;  1AK7 A;  1V6F A;  1JHW A;  3CI5 G;  2D8B A;  1TVJ A;  2MOT A;  1VFQ A;  4CBX G;  2LXX A;  1D4X G;  2FGH A;  1RGI G;  3DAW B;  3EGD A;  1P8Z G;  5A1M A;  5KYU B;  2MV2 A;  4PKH B;  5HVK B;  3EH2 A;  1PCX A;  1WFS A;  3L50 A; 
#chains in the Genus database with same CATH topology
 4LIZ A;  3EG9 B;  3CJB G;  3EGX B;  1T44 G;  2MP4 A;  1SVQ A;  4Z94 G;  1YVN G;  4PKI G;  1T3X A;  1C0G S;  1NMD G;  5DD2 A;  5KYU A;  2NUP B;  2KVK A;  3A5O S;  1EQY S;  5HVK D;  1MDU A;  5L6W C;  1QPV A;  1M2V B;  5FAE A;  4BEX 1;  1C0F S;  2VIK A;  3A5L S;  1H1V G;  3EG9 A;  3FG6 A;  2FH1 A;  5KYN A;  3EGX A;  2FH2 A;  1NLV G;  2FF3 A;  2I2Q A;  4KEE A;  1NM1 G;  3EFO B;  1PD1 A;  5KYW B;  1AK6 A;  1T3Y A;  1SVY A;  5KYY B;  1D0N A;  3A5N S;  1DEJ S;  3EH1 A;  2NUP A;  3CJC G;  1SVR A;  1Q8X A;  4KED A;  1M2V A;  1ESV S;  1HQZ 1;  2NUT A;  1F7S A;  1YAG G;  2QTV A;  1WNJ A;  2FF6 G;  5IVU A;  2VAC A;  1P8X A;  5FAF A;  2NUT B;  4CBW G;  3EFO A;  2XF1 A;  1CNU A;  3CIP G;  3DA7 A;  1WM4 A;  5KYW A;  5KYY A;  4PKG G;  1UDM A;  1AHQ A;  1Q8G A;  2W0I A;  3A5M S;  2FH3 A;  3FG7 A;  2FH4 A;  5KYX A;  1PD0 A;  2HD7 A;  1CFY A;  5KYX B;  3Q2B A;  2L72 A;  1NPH A;  1J72 A;  1VKK A;  4CBU G;  1T2L A;  4KEF A;  3EGD B;  2LJ8 A;  4S10 C;  3TU5 B;  1KCQ A;  1M4J A;  3FFN A;  1X67 A;  4JD2 H;  2VIL A;  2XFA A;  1M2O A;  1TMW A;  3FFK A;  1COF A;  2LLF A;  1AK7 A;  1V6F A;  1JHW A;  3CI5 G;  2D8B A;  1TVJ A;  2MOT A;  1VFQ A;  4CBX G;  2LXX A;  1D4X G;  2FGH A;  1RGI G;  3DAW B;  3EGD A;  1P8Z G;  5A1M A;  5KYU B;  2MV2 A;  4PKH B;  5HVK B;  3EH2 A;  1PCX A;  1WFS A;  3L50 A; 
#chains in the Genus database with same CATH homology
 4LIZ A;  3EG9 B;  3CJB G;  3EGX B;  1T44 G;  2MP4 A;  1SVQ A;  4Z94 G;  1YVN G;  4PKI G;  1T3X A;  1C0G S;  1NMD G;  5DD2 A;  5KYU A;  2NUP B;  2KVK A;  3A5O S;  1EQY S;  5HVK D;  1MDU A;  5L6W C;  1QPV A;  1M2V B;  5FAE A;  4BEX 1;  1C0F S;  2VIK A;  3A5L S;  1H1V G;  3EG9 A;  3FG6 A;  2FH1 A;  5KYN A;  3EGX A;  2FH2 A;  1NLV G;  2FF3 A;  2I2Q A;  4KEE A;  1NM1 G;  3EFO B;  1PD1 A;  5KYW B;  1AK6 A;  1T3Y A;  1SVY A;  5KYY B;  1D0N A;  3A5N S;  1DEJ S;  3EH1 A;  2NUP A;  3CJC G;  1SVR A;  1Q8X A;  4KED A;  1M2V A;  1ESV S;  1HQZ 1;  2NUT A;  1F7S A;  1YAG G;  2QTV A;  1WNJ A;  2FF6 G;  5IVU A;  2VAC A;  1P8X A;  5FAF A;  2NUT B;  4CBW G;  3EFO A;  2XF1 A;  1CNU A;  3CIP G;  3DA7 A;  1WM4 A;  5KYW A;  5KYY A;  4PKG G;  1UDM A;  1AHQ A;  1Q8G A;  2W0I A;  3A5M S;  2FH3 A;  3FG7 A;  2FH4 A;  5KYX A;  1PD0 A;  2HD7 A;  1CFY A;  5KYX B;  3Q2B A;  2L72 A;  1NPH A;  1J72 A;  1VKK A;  4CBU G;  1T2L A;  4KEF A;  3EGD B;  2LJ8 A;  4S10 C;  3TU5 B;  1KCQ A;  1M4J A;  3FFN A;  1X67 A;  4JD2 H;  2VIL A;  2XFA A;  1M2O A;  1TMW A;  3FFK A;  1COF A;  2LLF A;  1AK7 A;  1V6F A;  1JHW A;  3CI5 G;  2D8B A;  1TVJ A;  2MOT A;  1VFQ A;  4CBX G;  2LXX A;  1D4X G;  2FGH A;  1RGI G;  3DAW B;  3EGD A;  1P8Z G;  5A1M A;  5KYU B;  2MV2 A;  4PKH B;  5HVK B;  3EH2 A;  1PCX A;  1WFS A;  3L50 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...