3CJYA

Crystal structure of putative thioesterase (yp_496845.1) from novosphingobium aromaticivorans dsm 12444 at 1.70 a resolution
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
255
structure length
253
Chain Sequence
AFPALVRQDDARYAITVGPDLAVGPPGHAYLFGGASMALALDVAAETVGRPVVQGSLQFVSFTPLGSVLDLTVEVLQSGRTLAQARVAGTVDGRLVFHSGISLGMREGFSARQWALAPPVPQPDNCPPCTTLPAQDDNARYLEGIEVREAGGPEVPSGRTRLWLRRKDGAPLDAASLAMFADFLPIALGRATGCSGNSLDNSLRITGAAAPGWCLCDMIIPSSASGFAQGQVTLWDQSGRLLATGAQSLLLKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative thioesterase
publication title Crystal structure of putative thioesterase (YP_496845.1) from Novosphingobium aromaticivorans DSM 12444 at 1.70 A resolution
rcsb
source organism Novosphingobium aromaticivorans
total genus 61
structure length 253
sequence length 255
ec nomenclature
pdb deposition date 2008-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13622 4HBT_3 Thioesterase-like superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.129.90 Alpha Beta Roll Thiol Ester Dehydrase; Chain A Thiol Ester Dehydrase; Chain A 3cjyA00
3BBJA 3CJYA 4R4UA 3RD7A 3U0AA 3RQBA 4QFWA 4R9ZA
chains in the Genus database with same CATH superfamily
2QQPA 2VZ8A 3BBJA 3R32A 2O6UA 3ZH7B 3HRRA 3RQBA 2VKZG 2Q2BA 1ZHGA 2EGJA 3P2RA 5E1VA 4CL6A 3QY3A 3F1TA 3ZH5A 3R3CA 2VZ9A 5T06A 3D6LA 3P3FA 3LBBA 3DP1A 4B8UA 3U0AA 3R3BA 4OOBA 3KV7A 3R87A 3DP3A 3CJYA 2CY9A 1YLIA 2ESSA 1OHFA 1VPMA 2OIWA 4I82A 4AE7A 5EGKA 3ESIA 3B18A 2GLPA 3R34A 4MOBA 3TEAA 3KV8A 1IQ6A 1PN4A 3ZH6A 5SZYA 3E1EA 1LO8A 4RLUB 5EP5A 2GLVA 4RLWA 1BVQA 2XFLA 3LWGA 3CF9A 3LZ7A 4MTUA 4XY6A 1PN2A 3R36A 5DIOA 4E3EA 1NJKA 4LN9A 1Z54A 5HWFA 5HMBA 3KG7A 1MKBA 2H4UA 4HZOA 4RLJB 1T82A 2DSLA 4QFWA 4ZRBA 1WLUA 3D04A 3EXZA 2V1OA 3Q62A 1Z6BA 3KVUA 4A0YA 4QD9A 2F3XA 5HZ4A 3LW3A 5DM5A 5EO2A 2HLJA 3NWZA 1YOCA 2HX5A 4MZQA 2OKHA 3BNVA 4A12A 2GLMA 3HM0A 3B7JA 5BP3A 3QOOA 3DP2A 2AV9A 3IR3A 3KHPA 1VH9A 1S9CA 2OKIA 2W3XA 4FQ9A 4GAHA 4KEHA 4OOCA 3D6XA 1Q4TA 3GEKA 4ZJBA 5T07A 5EGLA 2Q78A 1Q4SA 3AZ9A 2GVHA 3RD7A 5KKUA 2QWZA 3E8PA 3KH8A 4XY5A 5EGJA 5KL9A 3DOZA 4H4GA 4WNBA 3ZH7A 5EO4A 5SZUA 2PFCA 4K02A 1Q6WA 4QDAA 2EGRA 3P3IA 4ZRFA 2B6EA 3AZBA 2UV8G 4RV2A 4W78A 2NUJA 2QQ2A 3E29A 3DKZA 5T02A 5BUYA 2EISA 4YBVA 4HZNA 4RLWB 4RLTA 4M20A 4U3VA 2PRXA 3ED0A 5BP2A 3FRNA 4B0JA 4I45A 2O5UA 3P2QA 4K49A 5BYUA 1VH5A 1SH8A 2B3MA 3KX8A 3P2SA 5HD6A 4R9ZA 4B0IA 1U1ZA 3LBEA 3KUWA 1Q4UA 1WN3A 2CYEA 2FS2A 2OV9A 3HDUA 3HRQA 4RLUA 4A0XA 4RMMA 3R3AA 3S4KA 2FUJA 3KX7A 5HMCA 4ZW0A 1PSUA 4QD7A 1WLVA 4ZV3A 3KG9A 1MKAA 4I83A 1LO9A 4I4JA 4K4AA 4B0BA 2EGIA 1ZKIA 3KG8A 4B0CA 5SZVA 4QD8A 4AE8A 3CF8A 3R37A 4MOCA 2C2IA 3EL6A 3LMBA 5CPGA 3SPSA 2GF6A 1WM6A 4R4UA 5BUXA 1SC0A 1TBUA 2BI0A 5F6RA 2PZHA 3F5OA 3KG6A 4IENA 4WNBB 2GLLA 2CWZA 4K4BA 4K4DA 2OWNA 4NCPA 3R3FA 3R35A 4QDBA 3AZ8A 5BUWA 2HBOA 5SZZA 4W78B 1IXLA 3DP0A 3KVIA 4RV2B 3S6PA 2F41A 1J1YA 3B7KA 4HZPA 4ORDA 3HMJG 1S5UA 3CK1A 4RLTB 3R3DA 4KC5A 1VI8A 4A0ZA 2XEMA 3KUVA 1LO7A 2F0XA 2O6TA 4GAKA 3BJKA 4K00A 4FFUA 2O6BA 4K4CA 3WEWA 3KW1A 3AZAA 1SBKA 2PIMA 3OMLA 4RLJA 1Y7UA 1C8UA 2OAFA 3DOYA 3KVZA 3K67A
chains in the Genus database with same CATH topology
2VZ8A 3ZH7A 3BBJA 4LN9A 2PFCA 3EL6A 3KG7A 4R4UA 2UV8G 3HRRA 3RQBA 2VKZG 4QFWA 5E1VA 4U3VA 5BP2A 3ZH5A 3FRNA 3KG6A 3ZH7B 2VZ9A 2QQPA 3S6PA 4R9ZA 3HMJG 3HRQA 4KC5A 3CJYA 1OHFA 5BP3A 3B18A 4OOCA 3ZH6A 3KG9A 3RD7A 5KKUA 3U0AA 3KG8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBJ A;  3CJY A;  4R4U A;  3RD7 A;  3U0A A;  3RQB A;  4QFW A;  4R9Z A; 
#chains in the Genus database with same CATH topology
 2QQP A;  2VZ8 A;  3BBJ A;  3R32 A;  2O6U A;  3ZH7 B;  3HRR A;  3RQB A;  2VKZ G;  2Q2B A;  1ZHG A;  2EGJ A;  3P2R A;  5E1V A;  4CL6 A;  3QY3 A;  3F1T A;  3ZH5 A;  3R3C A;  2VZ9 A;  5T06 A;  3D6L A;  3P3F A;  3LBB A;  3DP1 A;  4B8U A;  3U0A A;  3R3B A;  4OOB A;  3KV7 A;  3R87 A;  3DP3 A;  3CJY A;  2CY9 A;  1YLI A;  2ESS A;  1OHF A;  1VPM A;  2OIW A;  4I82 A;  4AE7 A;  5EGK A;  3ESI A;  3B18 A;  2GLP A;  3R34 A;  4MOB A;  3TEA A;  3KV8 A;  1IQ6 A;  1PN4 A;  3ZH6 A;  5SZY A;  3E1E A;  1LO8 A;  4RLU B;  5EP5 A;  2GLV A;  4RLW A;  1BVQ A;  2XFL A;  3LWG A;  3CF9 A;  3LZ7 A;  4MTU A;  4XY6 A;  1PN2 A;  3R36 A;  5DIO A;  4E3E A;  1NJK A;  4LN9 A;  1Z54 A;  5HWF A;  5HMB A;  3KG7 A;  1MKB A;  2H4U A;  4HZO A;  4RLJ B;  1T82 A;  2DSL A;  4QFW A;  4ZRB A;  1WLU A;  3D04 A;  3EXZ A;  2V1O A;  3Q62 A;  1Z6B A;  3KVU A;  4A0Y A;  4QD9 A;  2F3X A;  5HZ4 A;  3LW3 A;  5DM5 A;  5EO2 A;  2HLJ A;  3NWZ A;  1YOC A;  2HX5 A;  4MZQ A;  2OKH A;  3BNV A;  4A12 A;  2GLM A;  3HM0 A;  3B7J A;  5BP3 A;  3QOO A;  3DP2 A;  2AV9 A;  3IR3 A;  3KHP A;  1VH9 A;  1S9C A;  2OKI A;  2W3X A;  4FQ9 A;  4GAH A;  4KEH A;  4OOC A;  3D6X A;  1Q4T A;  3GEK A;  4ZJB A;  5T07 A;  5EGL A;  2Q78 A;  1Q4S A;  3AZ9 A;  2GVH A;  3RD7 A;  5KKU A;  2QWZ A;  3E8P A;  3KH8 A;  4XY5 A;  5EGJ A;  5KL9 A;  3DOZ A;  4H4G A;  4WNB A;  3ZH7 A;  5EO4 A;  5SZU A;  2PFC A;  4K02 A;  1Q6W A;  4QDA A;  2EGR A;  3P3I A;  4ZRF A;  2B6E A;  3AZB A;  2UV8 G;  4RV2 A;  4W78 A;  2NUJ A;  2QQ2 A;  3E29 A;  3DKZ A;  5T02 A;  5BUY A;  2EIS A;  4YBV A;  4HZN A;  4RLW B;  4RLT A;  4M20 A;  4U3V A;  2PRX A;  3ED0 A;  5BP2 A;  3FRN A;  4B0J A;  4I45 A;  2O5U A;  3P2Q A;  4K49 A;  5BYU A;  1VH5 A;  1SH8 A;  2B3M A;  3KX8 A;  3P2S A;  5HD6 A;  4R9Z A;  4B0I A;  1U1Z A;  3LBE A;  3KUW A;  1Q4U A;  1WN3 A;  2CYE A;  2FS2 A;  2OV9 A;  3HDU A;  3HRQ A;  4RLU A;  4A0X A;  4RMM A;  3R3A A;  3S4K A;  2FUJ A;  3KX7 A;  5HMC A;  4ZW0 A;  1PSU A;  4QD7 A;  1WLV A;  4ZV3 A;  3KG9 A;  1MKA A;  4I83 A;  1LO9 A;  4I4J A;  4K4A A;  4B0B A;  2EGI A;  1ZKI A;  3KG8 A;  4B0C A;  5SZV A;  4QD8 A;  4AE8 A;  3CF8 A;  3R37 A;  4MOC A;  2C2I A;  3EL6 A;  3LMB A;  5CPG A;  3SPS A;  2GF6 A;  1WM6 A;  4R4U A;  5BUX A;  1SC0 A;  1TBU A;  2BI0 A;  5F6R A;  2PZH A;  3F5O A;  3KG6 A;  4IEN A;  4WNB B;  2GLL A;  2CWZ A;  4K4B A;  4K4D A;  2OWN A;  4NCP A;  3R3F A;  3R35 A;  4QDB A;  3AZ8 A;  5BUW A;  2HBO A;  5SZZ A;  4W78 B;  1IXL A;  3DP0 A;  3KVI A;  4RV2 B;  3S6P A;  2F41 A;  1J1Y A;  3B7K A;  4HZP A;  4ORD A;  3HMJ G;  1S5U A;  3CK1 A;  4RLT B;  3R3D A;  4KC5 A;  1VI8 A;  4A0Z A;  2XEM A;  3KUV A;  1LO7 A;  2F0X A;  2O6T A;  4GAK A;  3BJK A;  4K00 A;  4FFU A;  2O6B A;  4K4C A;  3WEW A;  3KW1 A;  3AZA A;  1SBK A;  2PIM A;  3OML A;  4RLJ A;  1Y7U A;  1C8U A;  2OAF A;  3DOY A;  3KVZ A;  3K67 A; 
#chains in the Genus database with same CATH homology
 2VZ8 A;  3ZH7 A;  3BBJ A;  4LN9 A;  2PFC A;  3EL6 A;  3KG7 A;  4R4U A;  2UV8 G;  3HRR A;  3RQB A;  2VKZ G;  4QFW A;  5E1V A;  4U3V A;  5BP2 A;  3ZH5 A;  3FRN A;  3KG6 A;  3ZH7 B;  2VZ9 A;  2QQP A;  3S6P A;  4R9Z A;  3HMJ G;  3HRQ A;  4KC5 A;  3CJY A;  1OHF A;  5BP3 A;  3B18 A;  4OOC A;  3ZH6 A;  3KG9 A;  3RD7 A;  5KKU A;  3U0A A;  3KG8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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