3CMEH

The structure of ca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
total genus 37
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3cmeH00
2OTJH 1VQLH 1YJNH 5GAHN 3CCSH 1K9MJ 1Y69K 4IOCJ 1Q82J 5H1SO 1VQKH 1N8RJ 3I56H 1NJIJ 1VQ6H 4IO9J 5GAEN 1VQ5H 3CC4H 1YJWH 1YITH 4IOAJ 5DM7J 1VQPH 1VQOH 1VQ8H 4U67J 1VQ9H 3CCUH 1WKIA 3CCJH 3CPWH 3J7ZM 3CCMH 5MLCO 3CC2H 3CCEH 2QA4H 1Q81J 5HL7J 3CMAH 4WFBJ 4WFNJ 4WFAJ 1W2BH 3G4SH 1YIJH 3CCVH 3CC7H 1Q7YJ 5JVHJ 1M1KJ 1QVFH 1Q86J 1YJ9H 4UY8M 4WF9J 2ZJQJ 5GAGN 3I55H 1QVGH 3CMEH 5JVGJ 1VQ7H 2PA2A 1KD1J 3PIOJ 1VQMH 1YHQH 3DLLJ 3CD6H 3G71H 1K8AJ 4WCEJ 2QEXH 3OW2H 1K73J 3CCRH 1KC8J 5DM6J 5GADN 1JJ2H 1KQSH 3CXCH 1YI2H 3CCQH 1S72H 5AN9F 3CF5J 2ZJRJ 1VQ4H 1VQNH 3CCLH 1M90J 2ZJPJ 2OTLH 3G6EH 3PIPJ
chains in the Genus database with same CATH superfamily
1SIJA 2OTJH 2B7PA 3NVWC 4XR5A 4C7YA 1VQLH 1QAPA 1N5XA 2W3SB 1YJNH 5GAHN 1YTEA 3CCSH 1K9MJ 1N5WB 1Y69K 4IOCJ 2QIEA 3NS1C 1Q82J 4AP8A 5H1SO 2I1OA 2DSJA 1VQKH 1N8RJ 1QPOA 3GNNA 3WO1A 2W54B 3EUB4 3I56H 3ETRC 1QPNA 3C2EA 3C2FA 1NJIJ 2OMDA 1VQ6H 4IO9J 1N62B 4GA4A 3NVVC 3RPFA 1JROB 1ZXIB 2Q5WE 4US9A 1YTDA 3C2RA 1FM0E 5GAEN 1VQ5H 3C2VA 4YEKA 3CC4H 1YJWH 4YYYA 5HUOA 1YITH 4IOAJ 5DM7J 5HULA 1VQPH 1VLBA 1WYGA 1VQOH 1VQ8H 1VDVA 3L0GA 4U67J 1VQ9H 3CCUH 1WKIA 3CCJH 3CPWH 3J7ZM 4USAA 1OTPA 3H5QA 3CCMH 5MLCO 4EADA 4EAFA 3CC2H 3CCEH 4C80A 2QA4H 1FIQC 1Q81J 2TPTA 5HL7J 3TQVA 3VMMA 3AMZA 3CMAH 4WFBJ 4WFNJ 4WFAJ 1W2BH 1DGJA 1N63B 3B9JC 3G4SH 1YIJH 2WK6A 4GA6A 1N60B 3CCVH 3CC7H 1QPQA 1YTKA 1Q7YJ 5JVHJ 1O4UA 1M1KJ 1QVFH 1FFVB 1Q86J 3WNZA 1YJ9H 2W55B 4UY8M 4WF9J 4US8A 2J0FA 5EY3A 2B7QA 5AYZA 2ZJQJ 3FC4A 3L4PA 5GAGN 3I55H 2JBMA 3PAJA 4X46A 1NVIE 1UOUA 1QVGH 3CMEH 3AM9A 5JVGJ 1X1OA 3AN1A 3FAHA 5AYYA 1BRWA 1N61B 1VQ7H 2PA2A 1FFUB 1KD1J 3PIOJ 1QPRA 5EP8A 3NRZC 1AZYA 1VQMH 1YHQH 3DLLJ 1RM6A 2WP4A 3CD6H 3BIIE 1V97A 4GA5A 3G71H 1K8AJ 4KWVA 2WK5A 4WCEJ 2I14A 2QEXH 3CCRH 3OW2H 1K73J 4KWWA 1KC8J 5DM6J 1FMAE 3SR6C 5GADN 5AYXA 5HUPA 3C2OA 1JJ2H 1JRPB 1KQSH 4C7ZA 5MPOC 1NVJA 3CXCH 1YI2H 3CCQH 1S72H 4LHMA 5AN9F 3CF5J 2ZJRJ 1VQ4H 1SB3A 4I9AA 1VQNH 3CCLH 3NVYC 1M90J 2ZJPJ 2OTLH 2W3RB 3WO0A 3NVZC 4ZOHA 2E3TA 2B7NA 1FO4A 3G6EH 3PIPJ
chains in the Genus database with same CATH topology
2OTJH 1VQLH 1YJNH 5GAHN 3CCSH 1K9MJ 1Y69K 4IOCJ 1Q82J 5H1SO 1VQKH 1N8RJ 3I56H 1NJIJ 1VQ6H 4IO9J 5GAEN 1VQ5H 3CC4H 1YJWH 1YITH 4IOAJ 5DM7J 1VQPH 1VQOH 1VQ8H 4U67J 1VQ9H 3CCUH 1WKIA 3CCJH 3CPWH 3J7ZM 3CCMH 5MLCO 3CC2H 3CCEH 2QA4H 1Q81J 5HL7J 3CMAH 4WFBJ 4WFNJ 4WFAJ 1W2BH 3G4SH 1YIJH 3CCVH 3CC7H 1Q7YJ 5JVHJ 1M1KJ 1QVFH 1Q86J 1YJ9H 4UY8M 4WF9J 2ZJQJ 5GAGN 3I55H 1QVGH 3CMEH 5JVGJ 1VQ7H 2PA2A 1KD1J 3PIOJ 1VQMH 1YHQH 3DLLJ 3CD6H 3G71H 1K8AJ 4WCEJ 2QEXH 3OW2H 1K73J 3CCRH 1KC8J 5DM6J 5GADN 1JJ2H 1KQSH 3CXCH 1YI2H 3CCQH 1S72H 5AN9F 3CF5J 2ZJRJ 1VQ4H 1VQNH 3CCLH 1M90J 2ZJPJ 2OTLH 3G6EH 3PIPJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OTJ H;  1VQL H;  1YJN H;  5GAH N;  3CCS H;  1K9M J;  1Y69 K;  4IOC J;  1Q82 J;  5H1S O;  1VQK H;  1N8R J;  3I56 H;  1NJI J;  1VQ6 H;  4IO9 J;  5GAE N;  1VQ5 H;  3CC4 H;  1YJW H;  1YIT H;  4IOA J;  5DM7 J;  1VQP H;  1VQO H;  1VQ8 H;  4U67 J;  1VQ9 H;  3CCU H;  1WKI A;  3CCJ H;  3CPW H;  3J7Z M;  3CCM H;  5MLC O;  3CC2 H;  3CCE H;  2QA4 H;  1Q81 J;  5HL7 J;  3CMA H;  4WFB J;  4WFN J;  4WFA J;  1W2B H;  3G4S H;  1YIJ H;  3CCV H;  3CC7 H;  1Q7Y J;  5JVH J;  1M1K J;  1QVF H;  1Q86 J;  1YJ9 H;  4UY8 M;  4WF9 J;  2ZJQ J;  5GAG N;  3I55 H;  1QVG H;  3CME H;  5JVG J;  1VQ7 H;  2PA2 A;  1KD1 J;  3PIO J;  1VQM H;  1YHQ H;  3DLL J;  3CD6 H;  3G71 H;  1K8A J;  4WCE J;  2QEX H;  3OW2 H;  1K73 J;  3CCR H;  1KC8 J;  5DM6 J;  5GAD N;  1JJ2 H;  1KQS H;  3CXC H;  1YI2 H;  3CCQ H;  1S72 H;  5AN9 F;  3CF5 J;  2ZJR J;  1VQ4 H;  1VQN H;  3CCL H;  1M90 J;  2ZJP J;  2OTL H;  3G6E H;  3PIP J; 
#chains in the Genus database with same CATH topology
 1SIJ A;  2OTJ H;  2B7P A;  3NVW C;  4XR5 A;  4C7Y A;  1VQL H;  1QAP A;  1N5X A;  2W3S B;  1YJN H;  5GAH N;  1YTE A;  3CCS H;  1K9M J;  1N5W B;  1Y69 K;  4IOC J;  2QIE A;  3NS1 C;  1Q82 J;  4AP8 A;  5H1S O;  2I1O A;  2DSJ A;  1VQK H;  1N8R J;  1QPO A;  3GNN A;  3WO1 A;  2W54 B;  3EUB 4;  3I56 H;  3ETR C;  1QPN A;  3C2E A;  3C2F A;  1NJI J;  2OMD A;  1VQ6 H;  4IO9 J;  1N62 B;  4GA4 A;  3NVV C;  3RPF A;  1JRO B;  1ZXI B;  2Q5W E;  4US9 A;  1YTD A;  3C2R A;  1FM0 E;  5GAE N;  1VQ5 H;  3C2V A;  4YEK A;  3CC4 H;  1YJW H;  4YYY A;  5HUO A;  1YIT H;  4IOA J;  5DM7 J;  5HUL A;  1VQP H;  1VLB A;  1WYG A;  1VQO H;  1VQ8 H;  1VDV A;  3L0G A;  4U67 J;  1VQ9 H;  3CCU H;  1WKI A;  3CCJ H;  3CPW H;  3J7Z M;  4USA A;  1OTP A;  3H5Q A;  3CCM H;  5MLC O;  4EAD A;  4EAF A;  3CC2 H;  3CCE H;  4C80 A;  2QA4 H;  1FIQ C;  1Q81 J;  2TPT A;  5HL7 J;  3TQV A;  3VMM A;  3AMZ A;  3CMA H;  4WFB J;  4WFN J;  4WFA J;  1W2B H;  1DGJ A;  1N63 B;  3B9J C;  3G4S H;  1YIJ H;  2WK6 A;  4GA6 A;  1N60 B;  3CCV H;  3CC7 H;  1QPQ A;  1YTK A;  1Q7Y J;  5JVH J;  1O4U A;  1M1K J;  1QVF H;  1FFV B;  1Q86 J;  3WNZ A;  1YJ9 H;  2W55 B;  4UY8 M;  4WF9 J;  4US8 A;  2J0F A;  5EY3 A;  2B7Q A;  5AYZ A;  2ZJQ J;  3FC4 A;  3L4P A;  5GAG N;  3I55 H;  2JBM A;  3PAJ A;  4X46 A;  1NVI E;  1UOU A;  1QVG H;  3CME H;  3AM9 A;  5JVG J;  1X1O A;  3AN1 A;  3FAH A;  5AYY A;  1BRW A;  1N61 B;  1VQ7 H;  2PA2 A;  1FFU B;  1KD1 J;  3PIO J;  1QPR A;  5EP8 A;  3NRZ C;  1AZY A;  1VQM H;  1YHQ H;  3DLL J;  1RM6 A;  2WP4 A;  3CD6 H;  3BII E;  1V97 A;  4GA5 A;  3G71 H;  1K8A J;  4KWV A;  2WK5 A;  4WCE J;  2I14 A;  2QEX H;  3CCR H;  3OW2 H;  1K73 J;  4KWW A;  1KC8 J;  5DM6 J;  1FMA E;  3SR6 C;  5GAD N;  5AYX A;  5HUP A;  3C2O A;  1JJ2 H;  1JRP B;  1KQS H;  4C7Z A;  5MPO C;  1NVJ A;  3CXC H;  1YI2 H;  3CCQ H;  1S72 H;  4LHM A;  5AN9 F;  3CF5 J;  2ZJR J;  1VQ4 H;  1SB3 A;  4I9A A;  1VQN H;  3CCL H;  3NVY C;  1M90 J;  2ZJP J;  2OTL H;  2W3R B;  3WO0 A;  3NVZ C;  4ZOH A;  2E3T A;  2B7N A;  1FO4 A;  3G6E H;  3PIP J; 
#chains in the Genus database with same CATH homology
 2OTJ H;  1VQL H;  1YJN H;  5GAH N;  3CCS H;  1K9M J;  1Y69 K;  4IOC J;  1Q82 J;  5H1S O;  1VQK H;  1N8R J;  3I56 H;  1NJI J;  1VQ6 H;  4IO9 J;  5GAE N;  1VQ5 H;  3CC4 H;  1YJW H;  1YIT H;  4IOA J;  5DM7 J;  1VQP H;  1VQO H;  1VQ8 H;  4U67 J;  1VQ9 H;  3CCU H;  1WKI A;  3CCJ H;  3CPW H;  3J7Z M;  3CCM H;  5MLC O;  3CC2 H;  3CCE H;  2QA4 H;  1Q81 J;  5HL7 J;  3CMA H;  4WFB J;  4WFN J;  4WFA J;  1W2B H;  3G4S H;  1YIJ H;  3CCV H;  3CC7 H;  1Q7Y J;  5JVH J;  1M1K J;  1QVF H;  1Q86 J;  1YJ9 H;  4UY8 M;  4WF9 J;  2ZJQ J;  5GAG N;  3I55 H;  1QVG H;  3CME H;  5JVG J;  1VQ7 H;  2PA2 A;  1KD1 J;  3PIO J;  1VQM H;  1YHQ H;  3DLL J;  3CD6 H;  3G71 H;  1K8A J;  4WCE J;  2QEX H;  3OW2 H;  1K73 J;  3CCR H;  1KC8 J;  5DM6 J;  5GAD N;  1JJ2 H;  1KQS H;  3CXC H;  1YI2 H;  3CCQ H;  1S72 H;  5AN9 F;  3CF5 J;  2ZJR J;  1VQ4 H;  1VQN H;  3CCL H;  1M90 J;  2ZJP J;  2OTL H;  3G6E H;  3PIP J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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