3CMER

The structure of ca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 37
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
total genus 37
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 3cmeR00
4V19W 4WFAP 1YITR 1M90S 3CD6R 3DLLP 3CCLR 1KD1S 1YJ9R 2ZJPP 3I56R 1YJNR 1VQOR 3CCQR 5GADT 1QVFQ 5DM7P 4WF9P 3CCSR 1YJWR 2ZJRP 3CCRR 3CC7R 1K9MS 5DM6P 1YHQR 1Q82S 1VQNR 3CCUR 3G6ER 1BXEA 1VQKR 3CCVR 1N8RS 4U67P 1W2BQ 3CCMR 1Q7YS 1QVGQ 2OTJR 1VQPR 1VQ9R 1VQMR 4WCEP 1JJ2Q 3I55R 1VQ7R 5GAGT 1YIJR 1I4JA 3CF5P 5H1SU 1VQ6R 3J7ZS 2OTLR 1M1KS 5GAHT 1VQ8R 3CMER 1Q81S 1NJIS 1KC8S 3PIPP 5GAET 4WFBP 1VQLR 5MLCU 3CCER 3G4SR 1S72R 4IOAP 1K8AS 3CCJR 4IOCP 3CPWQ 2QEXR 3PIOP 2QA4R 5JVGP 1Q86S 4WFNP 3CC2R 3G71R 1KQSQ 1K73S 3OW2Q 5JVHP 1VQ4R 3CC4R 4UY8S 3CMAR 1YI2R 3CXCQ 5HL7P 3J7YT 4IO9P 2ZJQP 1VQ5R
chains in the Genus database with same CATH superfamily
4V19W 4HC6A 4WFAP 1FTHA 2WDSA 1YITR 1M90S 3CD6R 3DLLP 3CCLR 1KD1S 1YJ9R 2ZJPP 3NFDA 3I56R 1YJNR 1VQOR 1F7TA 3CCQR 5CMOA 5GADT 1F7LA 1QVFQ 5DM7P 5CXDA 4WF9P 3CCSR 1YJWR 3NE9A 2ZJRP 3CCRR 3CC7R 1K9MS 5DM6P 2BYDA 1YHQR 2QG8A 1Q82S 3CCUR 1VQNR 2D0PA 2WDOA 2JBZA 3G6ER 1BXEA 1VQKR 2D0OA 2WASB 3CCVR 4DXEA 1N8RS 4U67P 1W2BQ 3CCMR 1Q7YS 1QVGQ 2OTJR 1VQPR 2WDYA 1VQ9R 1VQMR 4WCEP 1JJ2Q 1FTFA 4JM7A 3I55R 2JCAA 2CG5A 1VQ7R 2WASA 5GAGT 1YIJR 1I4JA 3CF5P 5H1SU 1VQ6R 3J7ZS 1VQ5R 2OTLR 1M1KS 5GAHT 1VQ8R 3CMER 1Q81S 1NJIS 1KC8S 3PIPP 5GAET 4WFBP 2WATA 1VQLR 3NE1A 5MLCU 1NBWA 3NE3B 3CCER 3G4SR 1S72R 4IOAP 1FTEA 2C43A 1K8AS 3CCJR 4IOCP 3CPWQ 2BDDA 2QEXR 3PIOP 3HQJA 2QA4R 5JVGP 1Q86S 4WFNP 3CC2R 3GWMA 3G71R 3QMNA 1KQSQ 1K73S 3OW2Q 3HYKA 1QR0A 3H7QA 5JVHP 1VQ4R 3CC4R 4UY8S 3CMAR 1YI2R 3CXCQ 5HL7P 4MRTA 3J7YT 4IO9P 2ZJQP 1F80A
chains in the Genus database with same CATH topology
4V19W 4WFAP 1YITR 1M90S 3CD6R 3DLLP 3CCLR 1KD1S 1YJ9R 2ZJPP 3I56R 1YJNR 1VQOR 3CCQR 5GADT 1QVFQ 5DM7P 4WF9P 3CCSR 1YJWR 2ZJRP 3CCRR 3CC7R 1K9MS 5DM6P 1YHQR 1Q82S 1VQNR 3CCUR 3G6ER 1BXEA 1VQKR 3CCVR 1N8RS 4U67P 1W2BQ 3CCMR 1Q7YS 1QVGQ 2OTJR 1VQPR 1VQ9R 1VQMR 4WCEP 1JJ2Q 3I55R 1VQ7R 5GAGT 1YIJR 1I4JA 3CF5P 5H1SU 1VQ6R 3J7ZS 2OTLR 1M1KS 5GAHT 1VQ8R 3CMER 1Q81S 1NJIS 1KC8S 3PIPP 5GAET 4WFBP 1VQLR 5MLCU 3CCER 3G4SR 1S72R 4IOAP 1K8AS 3CCJR 4IOCP 3CPWQ 2QEXR 3PIOP 2QA4R 5JVGP 1Q86S 4WFNP 3CC2R 3G71R 1KQSQ 1K73S 3OW2Q 5JVHP 1VQ4R 3CC4R 4UY8S 3CMAR 1YI2R 3CXCQ 5HL7P 3J7YT 4IO9P 2ZJQP 1VQ5R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V19 W;  4WFA P;  1YIT R;  1M90 S;  3CD6 R;  3DLL P;  3CCL R;  1KD1 S;  1YJ9 R;  2ZJP P;  3I56 R;  1YJN R;  1VQO R;  3CCQ R;  5GAD T;  1QVF Q;  5DM7 P;  4WF9 P;  3CCS R;  1YJW R;  2ZJR P;  3CCR R;  3CC7 R;  1K9M S;  5DM6 P;  1YHQ R;  1Q82 S;  1VQN R;  3CCU R;  3G6E R;  1BXE A;  1VQK R;  3CCV R;  1N8R S;  4U67 P;  1W2B Q;  3CCM R;  1Q7Y S;  1QVG Q;  2OTJ R;  1VQP R;  1VQ9 R;  1VQM R;  4WCE P;  1JJ2 Q;  3I55 R;  1VQ7 R;  5GAG T;  1YIJ R;  1I4J A;  3CF5 P;  5H1S U;  1VQ6 R;  3J7Z S;  2OTL R;  1M1K S;  5GAH T;  1VQ8 R;  3CME R;  1Q81 S;  1NJI S;  1KC8 S;  3PIP P;  5GAE T;  4WFB P;  1VQL R;  5MLC U;  3CCE R;  3G4S R;  1S72 R;  4IOA P;  1K8A S;  3CCJ R;  4IOC P;  3CPW Q;  2QEX R;  3PIO P;  2QA4 R;  5JVG P;  1Q86 S;  4WFN P;  3CC2 R;  3G71 R;  1KQS Q;  1K73 S;  3OW2 Q;  5JVH P;  1VQ4 R;  3CC4 R;  4UY8 S;  3CMA R;  1YI2 R;  3CXC Q;  5HL7 P;  3J7Y T;  4IO9 P;  2ZJQ P;  1VQ5 R; 
#chains in the Genus database with same CATH topology
 4V19 W;  4HC6 A;  4WFA P;  1FTH A;  2WDS A;  1YIT R;  1M90 S;  3CD6 R;  3DLL P;  3CCL R;  1KD1 S;  1YJ9 R;  2ZJP P;  3NFD A;  3I56 R;  1YJN R;  1VQO R;  1F7T A;  3CCQ R;  5CMO A;  5GAD T;  1F7L A;  1QVF Q;  5DM7 P;  5CXD A;  4WF9 P;  3CCS R;  1YJW R;  3NE9 A;  2ZJR P;  3CCR R;  3CC7 R;  1K9M S;  5DM6 P;  2BYD A;  1YHQ R;  2QG8 A;  1Q82 S;  3CCU R;  1VQN R;  2D0P A;  2WDO A;  2JBZ A;  3G6E R;  1BXE A;  1VQK R;  2D0O A;  2WAS B;  3CCV R;  4DXE A;  1N8R S;  4U67 P;  1W2B Q;  3CCM R;  1Q7Y S;  1QVG Q;  2OTJ R;  1VQP R;  2WDY A;  1VQ9 R;  1VQM R;  4WCE P;  1JJ2 Q;  1FTF A;  4JM7 A;  3I55 R;  2JCA A;  2CG5 A;  1VQ7 R;  2WAS A;  5GAG T;  1YIJ R;  1I4J A;  3CF5 P;  5H1S U;  1VQ6 R;  3J7Z S;  1VQ5 R;  2OTL R;  1M1K S;  5GAH T;  1VQ8 R;  3CME R;  1Q81 S;  1NJI S;  1KC8 S;  3PIP P;  5GAE T;  4WFB P;  2WAT A;  1VQL R;  3NE1 A;  5MLC U;  1NBW A;  3NE3 B;  3CCE R;  3G4S R;  1S72 R;  4IOA P;  1FTE A;  2C43 A;  1K8A S;  3CCJ R;  4IOC P;  3CPW Q;  2BDD A;  2QEX R;  3PIO P;  3HQJ A;  2QA4 R;  5JVG P;  1Q86 S;  4WFN P;  3CC2 R;  3GWM A;  3G71 R;  3QMN A;  1KQS Q;  1K73 S;  3OW2 Q;  3HYK A;  1QR0 A;  3H7Q A;  5JVH P;  1VQ4 R;  3CC4 R;  4UY8 S;  3CMA R;  1YI2 R;  3CXC Q;  5HL7 P;  4MRT A;  3J7Y T;  4IO9 P;  2ZJQ P;  1F80 A; 
#chains in the Genus database with same CATH homology
 4V19 W;  4WFA P;  1YIT R;  1M90 S;  3CD6 R;  3DLL P;  3CCL R;  1KD1 S;  1YJ9 R;  2ZJP P;  3I56 R;  1YJN R;  1VQO R;  3CCQ R;  5GAD T;  1QVF Q;  5DM7 P;  4WF9 P;  3CCS R;  1YJW R;  2ZJR P;  3CCR R;  3CC7 R;  1K9M S;  5DM6 P;  1YHQ R;  1Q82 S;  1VQN R;  3CCU R;  3G6E R;  1BXE A;  1VQK R;  3CCV R;  1N8R S;  4U67 P;  1W2B Q;  3CCM R;  1Q7Y S;  1QVG Q;  2OTJ R;  1VQP R;  1VQ9 R;  1VQM R;  4WCE P;  1JJ2 Q;  3I55 R;  1VQ7 R;  5GAG T;  1YIJ R;  1I4J A;  3CF5 P;  5H1S U;  1VQ6 R;  3J7Z S;  2OTL R;  1M1K S;  5GAH T;  1VQ8 R;  3CME R;  1Q81 S;  1NJI S;  1KC8 S;  3PIP P;  5GAE T;  4WFB P;  1VQL R;  5MLC U;  3CCE R;  3G4S R;  1S72 R;  4IOA P;  1K8A S;  3CCJ R;  4IOC P;  3CPW Q;  2QEX R;  3PIO P;  2QA4 R;  5JVG P;  1Q86 S;  4WFN P;  3CC2 R;  3G71 R;  1KQS Q;  1K73 S;  3OW2 Q;  5JVH P;  1VQ4 R;  3CC4 R;  4UY8 S;  3CMA R;  1YI2 R;  3CXC Q;  5HL7 P;  3J7Y T;  4IO9 P;  2ZJQ P;  1VQ5 R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...