3COQA

Structural basis for dimerization in dna recognition by gal4
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
89
structure length
89
Chain Sequence
EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEVESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLTGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for dimerization in DNA recognition by gal4.
pubmed doi rcsb
molecule tags Transcription/dna
source organism Saccharomyces cerevisiae
molecule keywords DNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*D
total genus 24
structure length 89
sequence length 89
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 3coqA00
1AJYA 1F4SP 2EREA 1AW6A 1F5EP 1HWTC 1PYIA 2HAPC 3ALCA 2ERGA 1PYCA 2ER8A 3COQA 1QP9A 1ZMEC 1D66A 2ALCA
chains in the Genus database with same CATH superfamily
1AJYA 1F4SP 2EREA 1AW6A 1F5EP 1HWTC 1PYIA 2HAPC 3ALCA 2ERGA 1PYCA 2ER8A 3COQA 1QP9A 1ZMEC 1D66A 2ALCA
chains in the Genus database with same CATH topology
1AJYA 1F4SP 2EREA 1AW6A 1F5EP 1HWTC 1PYIA 2HAPC 3ALCA 2ERGA 1PYCA 2ER8A 3COQA 1QP9A 1ZMEC 1D66A 2ALCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJY A;  1F4S P;  2ERE A;  1AW6 A;  1F5E P;  1HWT C;  1PYI A;  2HAP C;  3ALC A;  2ERG A;  1PYC A;  2ER8 A;  3COQ A;  1QP9 A;  1ZME C;  1D66 A;  2ALC A; 
#chains in the Genus database with same CATH topology
 1AJY A;  1F4S P;  2ERE A;  1AW6 A;  1F5E P;  1HWT C;  1PYI A;  2HAP C;  3ALC A;  2ERG A;  1PYC A;  2ER8 A;  3COQ A;  1QP9 A;  1ZME C;  1D66 A;  2ALC A; 
#chains in the Genus database with same CATH homology
 1AJY A;  1F4S P;  2ERE A;  1AW6 A;  1F5E P;  1HWT C;  1PYI A;  2HAP C;  3ALC A;  2ERG A;  1PYC A;  2ER8 A;  3COQ A;  1QP9 A;  1ZME C;  1D66 A;  2ALC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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