3CORA

Crystal structure of the complex of peptidoglycan recognition protein (pgrp-s) with n-acetylgalactosamine at 3.1 a resolution
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
171
structure length
171
Chain Sequence
EDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHTAGSHCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPISIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRDVQPTLSPGDRLYEIIQTWSHYRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Peptidoglycan recognition protein
publication title Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with N-acetylgalactosamine at 3.1 A resolution
rcsb
total genus 52
structure length 171
sequence length 171
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 3corA00
3NW3A 3O4KA 3D2ZA 3UILA 4GF9A 1SXRA 2Z9NA 4Q8SA 3CXAA 4OPPA 2Y2EA 3USXA 1SK4A 4IVVA 3UMQA 3QV4A 1LBAA 2APHA 3RDRA 3T39A 3RT4A 3CORA 1J3GA 4OUGA 2WKXA 1YB0A 2L47A 4BPAA 5DWFA 2EAXA 4Q9EA 2Y28A 4BJ4A 2Y2BA 1SK3A 3NNOA 1OHTA 2XZ8A 4BXJA 2CB3A 2Y2CA 1AROL 4ORVA 2RKQA 4FNNA 3D2YA 2AR3A 2R90A 3OGXA 5E0AA 4KNLA 3CG9A 4Z8IA 4ZXMA 1YCKA 2F2LX 3UMLA 3EP1A 4BOLA 3LATA 4BXDA 3TRUA 3QS0A 3NG4A 3T2VA 2BH7A 1TWQA 2F2LA 1S2JA 2EAVA 4KNKA 5CTVA 2XZ4A 4BXEA 3C2XA 4X36A 2Y2DA 3QJ1A 3HMBA 2R2KA 1Z6IA 4OLSA 5E0BA
chains in the Genus database with same CATH superfamily
3NW3A 3O4KA 3D2ZA 3UILA 4GF9A 1SXRA 2Z9NA 4Q8SA 3CXAA 4OPPA 2Y2EA 3USXA 1SK4A 4IVVA 3UMQA 3QV4A 1LBAA 2APHA 3RDRA 3T39A 3RT4A 3CORA 1J3GA 4OUGA 2WKXA 1YB0A 2L47A 4BPAA 5DWFA 2EAXA 4Q9EA 2Y28A 4BJ4A 2Y2BA 1SK3A 3NNOA 1OHTA 2XZ8A 4BXJA 2CB3A 2Y2CA 1AROL 4ORVA 2RKQA 4FNNA 3D2YA 2AR3A 2R90A 3OGXA 5E0AA 4KNLA 3CG9A 4Z8IA 4ZXMA 1YCKA 2F2LX 3UMLA 3EP1A 4BOLA 3LATA 4BXDA 3TRUA 3QS0A 3NG4A 3T2VA 2BH7A 1TWQA 2F2LA 1S2JA 2EAVA 4KNKA 5CTVA 2XZ4A 4BXEA 3C2XA 4X36A 2Y2DA 3QJ1A 3HMBA 2R2KA 1Z6IA 4OLSA 5E0BA
chains in the Genus database with same CATH topology
3NW3A 3O4KA 3D2ZA 3UILA 4GF9A 1SXRA 2Z9NA 4Q8SA 3CXAA 4OPPA 2Y2EA 3USXA 1SK4A 4IVVA 3UMQA 3QV4A 1LBAA 2APHA 3RDRA 3T39A 3RT4A 3CORA 1J3GA 4OUGA 2WKXA 1YB0A 2L47A 4BPAA 5DWFA 2EAXA 4Q9EA 2Y28A 4BJ4A 2Y2BA 1SK3A 3NNOA 1OHTA 2XZ8A 4BXJA 2CB3A 2Y2CA 1AROL 4ORVA 2RKQA 4FNNA 3D2YA 2AR3A 2R90A 3OGXA 5E0AA 4KNLA 3CG9A 4Z8IA 4ZXMA 1YCKA 2F2LX 3UMLA 3EP1A 4BOLA 3LATA 4BXDA 3TRUA 3QS0A 3NG4A 3T2VA 2BH7A 1TWQA 2F2LA 1S2JA 2EAVA 4KNKA 5CTVA 2XZ4A 4BXEA 3C2XA 4X36A 2Y2DA 3QJ1A 3HMBA 2R2KA 1Z6IA 4OLSA 5E0BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NW3 A;  3O4K A;  3D2Z A;  3UIL A;  4GF9 A;  1SXR A;  2Z9N A;  4Q8S A;  3CXA A;  4OPP A;  2Y2E A;  3USX A;  1SK4 A;  4IVV A;  3UMQ A;  3QV4 A;  1LBA A;  2APH A;  3RDR A;  3T39 A;  3RT4 A;  3COR A;  1J3G A;  4OUG A;  2WKX A;  1YB0 A;  2L47 A;  4BPA A;  5DWF A;  2EAX A;  4Q9E A;  2Y28 A;  4BJ4 A;  2Y2B A;  1SK3 A;  3NNO A;  1OHT A;  2XZ8 A;  4BXJ A;  2CB3 A;  2Y2C A;  1ARO L;  4ORV A;  2RKQ A;  4FNN A;  3D2Y A;  2AR3 A;  2R90 A;  3OGX A;  5E0A A;  4KNL A;  3CG9 A;  4Z8I A;  4ZXM A;  1YCK A;  2F2L X;  3UML A;  3EP1 A;  4BOL A;  3LAT A;  4BXD A;  3TRU A;  3QS0 A;  3NG4 A;  3T2V A;  2BH7 A;  1TWQ A;  2F2L A;  1S2J A;  2EAV A;  4KNK A;  5CTV A;  2XZ4 A;  4BXE A;  3C2X A;  4X36 A;  2Y2D A;  3QJ1 A;  3HMB A;  2R2K A;  1Z6I A;  4OLS A;  5E0B A; 
#chains in the Genus database with same CATH topology
 3NW3 A;  3O4K A;  3D2Z A;  3UIL A;  4GF9 A;  1SXR A;  2Z9N A;  4Q8S A;  3CXA A;  4OPP A;  2Y2E A;  3USX A;  1SK4 A;  4IVV A;  3UMQ A;  3QV4 A;  1LBA A;  2APH A;  3RDR A;  3T39 A;  3RT4 A;  3COR A;  1J3G A;  4OUG A;  2WKX A;  1YB0 A;  2L47 A;  4BPA A;  5DWF A;  2EAX A;  4Q9E A;  2Y28 A;  4BJ4 A;  2Y2B A;  1SK3 A;  3NNO A;  1OHT A;  2XZ8 A;  4BXJ A;  2CB3 A;  2Y2C A;  1ARO L;  4ORV A;  2RKQ A;  4FNN A;  3D2Y A;  2AR3 A;  2R90 A;  3OGX A;  5E0A A;  4KNL A;  3CG9 A;  4Z8I A;  4ZXM A;  1YCK A;  2F2L X;  3UML A;  3EP1 A;  4BOL A;  3LAT A;  4BXD A;  3TRU A;  3QS0 A;  3NG4 A;  3T2V A;  2BH7 A;  1TWQ A;  2F2L A;  1S2J A;  2EAV A;  4KNK A;  5CTV A;  2XZ4 A;  4BXE A;  3C2X A;  4X36 A;  2Y2D A;  3QJ1 A;  3HMB A;  2R2K A;  1Z6I A;  4OLS A;  5E0B A; 
#chains in the Genus database with same CATH homology
 3NW3 A;  3O4K A;  3D2Z A;  3UIL A;  4GF9 A;  1SXR A;  2Z9N A;  4Q8S A;  3CXA A;  4OPP A;  2Y2E A;  3USX A;  1SK4 A;  4IVV A;  3UMQ A;  3QV4 A;  1LBA A;  2APH A;  3RDR A;  3T39 A;  3RT4 A;  3COR A;  1J3G A;  4OUG A;  2WKX A;  1YB0 A;  2L47 A;  4BPA A;  5DWF A;  2EAX A;  4Q9E A;  2Y28 A;  4BJ4 A;  2Y2B A;  1SK3 A;  3NNO A;  1OHT A;  2XZ8 A;  4BXJ A;  2CB3 A;  2Y2C A;  1ARO L;  4ORV A;  2RKQ A;  4FNN A;  3D2Y A;  2AR3 A;  2R90 A;  3OGX A;  5E0A A;  4KNL A;  3CG9 A;  4Z8I A;  4ZXM A;  1YCK A;  2F2L X;  3UML A;  3EP1 A;  4BOL A;  3LAT A;  4BXD A;  3TRU A;  3QS0 A;  3NG4 A;  3T2V A;  2BH7 A;  1TWQ A;  2F2L A;  1S2J A;  2EAV A;  4KNK A;  5CTV A;  2XZ4 A;  4BXE A;  3C2X A;  4X36 A;  2Y2D A;  3QJ1 A;  3HMB A;  2R2K A;  1Z6I A;  4OLS A;  5E0B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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