3CQBA

Crystal structure of heat shock protein htpx domain from vibrio parahaemolyticus rimd 2210633
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
105
structure length
103
Chain Sequence
NASKGMALRSVGGMVIESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKDSLVAVSTGLLHNMTRDEAEAVLAHEVSHIANGDMVTMTLMQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The crystal structure of heat shock protein HtpX domain from Vibrio parahaemolyticus RIMD 2210633.
rcsb
molecule tags Hydrolase
source organism Vibrio parahaemolyticus rimd 2210633
molecule keywords Probable protease htpX homolog
total genus 32
structure length 103
sequence length 105
chains with identical sequence B
ec nomenclature ec 3.4.24.-:
pdb deposition date 2008-04-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2010.10 Alpha Beta 2-Layer Sandwich Zincin-like Metalloproteases ("zincins"), catalytic domain 3cqbA01
4QHFA 4JIXA 4AW6A 3CQBA 4IL3A 4JIUA 2YPTA
chains in the Genus database with same CATH superfamily
4EJ5A 1I1EA 2IMAA 1S0EA 3FIEA 3FIIA 3ZURA 3V0AA 1XTGA 4QHFA 1S0DA 3QJ0A 2NZ9A 2G7NA 3QW6A 2G7KA 1S0FA 4ELCA 2EJQA 5BQMA 3ZUQA 4AW6A 3C8BA 3DEBA 2ISGA 4J1LA 4ZKTB 1S0BA 2G7QA 3BWIA 3DS9A 2FPQA 2W2DA 2G7PA 3QW5A 4HEVA 3DDBA 1G9DA 4ZJXA 1EPWA 2ILPA 1S0GA 2IMCA 1T3AA 1G9CA 1ZKWA 3DSEA 4KUFA 1F31A 1F82A 3D3XA 2XHLA 4KS6A 1G9AA 2QN0A 3C88A 2NYYA 4JIXA 1ZL6A 2NP0A 2A97A 2ETFA 2ISEA 3K3QB 1ZN3A 3BONA 2IMBA 3QIXA 4KTXA 4JIUA 3E11A 3ZUSA 1Z7HA 4IL3A 2ISHA 3BOOA 3CQBA 4EL4A 5BQNA 3QW7A 1E1HA 1ZL5A 3DDAA 3V0BB 3QIZA 3VUOA 3NF3A 2A8AA 3C8AA 3FFZA 3BTAA 1G9BA 3QW8A 1YVGA 3V0BA 1ZB7A 1XTFA 3V0AB 1ZKXA 1S0CA 1T3CA 3QIYA 3BOKA 3C89A 2YPTA
chains in the Genus database with same CATH topology
4QHFA 4JIXA 4AW6A 3CQBA 1OZ9A 1TVIA 4JIUA 1XM5A 4IL3A 1XAXA 2YPTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QHF A;  4JIX A;  4AW6 A;  3CQB A;  4IL3 A;  4JIU A;  2YPT A; 
#chains in the Genus database with same CATH topology
 4EJ5 A;  1I1E A;  2IMA A;  1S0E A;  3FIE A;  3FII A;  3ZUR A;  3V0A A;  1XTG A;  4QHF A;  1S0D A;  3QJ0 A;  2NZ9 A;  2G7N A;  3QW6 A;  2G7K A;  1S0F A;  4ELC A;  2EJQ A;  5BQM A;  3ZUQ A;  4AW6 A;  3C8B A;  3DEB A;  2ISG A;  4J1L A;  4ZKT B;  1S0B A;  2G7Q A;  3BWI A;  3DS9 A;  2FPQ A;  2W2D A;  2G7P A;  3QW5 A;  4HEV A;  3DDB A;  1G9D A;  4ZJX A;  1EPW A;  2ILP A;  1S0G A;  2IMC A;  1T3A A;  1G9C A;  1ZKW A;  3DSE A;  4KUF A;  1F31 A;  1F82 A;  3D3X A;  2XHL A;  4KS6 A;  1G9A A;  2QN0 A;  3C88 A;  2NYY A;  4JIX A;  1ZL6 A;  2NP0 A;  2A97 A;  2ETF A;  2ISE A;  3K3Q B;  1ZN3 A;  3BON A;  2IMB A;  3QIX A;  4KTX A;  4JIU A;  3E11 A;  3ZUS A;  1Z7H A;  4IL3 A;  2ISH A;  3BOO A;  3CQB A;  4EL4 A;  5BQN A;  3QW7 A;  1E1H A;  1ZL5 A;  3DDA A;  3V0B B;  3QIZ A;  3VUO A;  3NF3 A;  2A8A A;  3C8A A;  3FFZ A;  3BTA A;  1G9B A;  3QW8 A;  1YVG A;  3V0B A;  1ZB7 A;  1XTF A;  3V0A B;  1ZKX A;  1S0C A;  1T3C A;  3QIY A;  3BOK A;  3C89 A;  2YPT A; 
#chains in the Genus database with same CATH homology
 4QHF A;  4JIX A;  4AW6 A;  3CQB A;  1OZ9 A;  1TVI A;  4JIU A;  1XM5 A;  4IL3 A;  1XAX A;  2YPT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...