3CRDA

Nmr structure of the raidd card domain, 15 structures
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
100
structure length
100
Chain Sequence
MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDILPSRGPKAFDTFLDSLQEFPWVREKLKKAREEAMTDLPAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Caspase recruitment domain
molecule keywords RAIDD
publication title Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 100
sequence length 100
ec nomenclature
pdb deposition date 1998-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3crdA00
1N3KA 4F42A 2YU0A 2OF5A 4A2QA 1E3YA 4IZ7B 4FH0A 4LWDA 3EZQB 1CWWA 3J6JA 2L9MA 2DBDA 2D96A 1Z6TA 3T6PA 4N1KA 4P4HI 4NQKA 2MB9A 4M9SA 3LQQA 2YVIA 2NZ7A 2YGSA 2MPCA 3KATA 4N1LA 2OF5H 2MN4A 2DBGA 2B1WA 1YGOA 2G7RA 3YGSP 2LS7A 3YGSC 4I16A 4M9XA 3EZQA 3CRDA 2YQFA 2F1SA 2N80A 4QOBA 1NGRA 4UZ0A 4RHWA 2BBRA 3CL3A 1ICHA 1DDFA 1WXPA 4RHWE 3QF2A 2DO9A 2LWEA 2MS7A 2DBHA 4JQWA 1CY5A 2N7ZA 2P1HA 1FADA 4O7QA 4DWNA 2NSNA 2A5YB 1A1ZA 3MOPA 4EWIA 2N1FA 4ZBWA 2M5VA 1D2ZB 2N83A 2A9IA 4O9LA 3J63A 2BBZA 2GF5A 1WMGA 4D8OA 1C15A 2KM6A 2N00A 4JUPA 2MS8A 4P4HA 4IZAB 2L6AA 2N97A 2O71A 2IB1A 3LQRA 4F44A 1UCPA 2VGQA 3MOPG 4N1JA 1D2ZA 2LWDA 4E9MA 2HM2Q 4O9FA 1PN5A 1A1WA 2NAQA 2DBFA 4O6XA 4M9ZA 1WH4A 4A2WA 1DGNA 4IZ5E 1E41A 2KN6A 3MOPK
chains in the Genus database with same CATH superfamily
1N3KA 4F42A 2YU0A 2OF5A 4A2QA 1E3YA 4IZ7B 4FH0A 4LWDA 3EZQB 1CWWA 3J6JA 2L9MA 2DBDA 2D96A 1Z6TA 3T6PA 4N1KA 4P4HI 4NQKA 2MB9A 4M9SA 3LQQA 2YVIA 2NZ7A 2YGSA 2MPCA 3KATA 4N1LA 2OF5H 2MN4A 2DBGA 2B1WA 1YGOA 2G7RA 3YGSP 2LS7A 3YGSC 4I16A 4M9XA 3EZQA 3CRDA 2YQFA 2F1SA 2N80A 4QOBA 1NGRA 4UZ0A 4RHWA 2BBRA 3CL3A 1ICHA 1DDFA 1WXPA 4RHWE 3QF2A 2DO9A 2LWEA 2MS7A 2DBHA 4JQWA 2XV9A 1CY5A 2N7ZA 2P1HA 1FADA 4O7QA 4DWNA 2NSNA 2A5YB 1A1ZA 3MOPA 4EWIA 2N1FA 4ZBWA 2M5VA 1D2ZB 2N83A 2A9IA 4O9LA 3J63A 2BBZA 2GF5A 1WMGA 4D8OA 1C15A 2KM6A 2N00A 4JUPA 2MS8A 4P4HA 4IZAB 2L6AA 2N97A 2O71A 2IB1A 3LQRA 4F44A 1UCPA 2MJMA 2VGQA 3MOPG 4N1JA 1D2ZA 2LWDA 4E9MA 2HM2Q 4O9FA 1PN5A 1A1WA 2NAQA 2DBFA 4O6XA 4M9ZA 1WH4A 4A2WA 1DGNA 4IZ5E 1E41A 2KN6A 3MOPK
chains in the Genus database with same CATH topology
1N3KA 4F42A 2YU0A 2OF5A 4A2QA 1E3YA 4IZ7B 4FH0A 4LWDA 3EZQB 1CWWA 3J6JA 2L9MA 2DBDA 2D96A 1Z6TA 3T6PA 4N1KA 4P4HI 4NQKA 2MB9A 4M9SA 3LQQA 2YVIA 2NZ7A 2YGSA 2MPCA 3KATA 4N1LA 2OF5H 2MN4A 2DBGA 2B1WA 1YGOA 2G7RA 3YGSP 2LS7A 3YGSC 4I16A 4M9XA 3EZQA 3CRDA 2YQFA 2F1SA 2N80A 4QOBA 1NGRA 4UZ0A 4RHWA 2BBRA 3CL3A 1ICHA 1DDFA 1WXPA 4RHWE 3QF2A 2DO9A 2LWEA 2MS7A 2DBHA 4JQWA 2XV9A 1CY5A 2N7ZA 2P1HA 1FADA 4O7QA 4DWNA 2NSNA 2A5YB 1A1ZA 3MOPA 4EWIA 2N1FA 4ZBWA 2M5VA 1D2ZB 2N83A 2A9IA 4O9LA 3J63A 2BBZA 2GF5A 1WMGA 4D8OA 1C15A 2KM6A 2N00A 4JUPA 2MS8A 4P4HA 4IZAB 2L6AA 2N97A 2O71A 2IB1A 3LQRA 4F44A 1UCPA 2MJMA 2VGQA 3MOPG 4N1JA 1D2ZA 2LWDA 4E9MA 2HM2Q 4O9FA 1PN5A 1A1WA 2NAQA 2DBFA 4O6XA 4M9ZA 1WH4A 4A2WA 1DGNA 4IZ5E 1E41A 2KN6A 3MOPK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N3K A;  4F42 A;  2YU0 A;  2OF5 A;  4A2Q A;  1E3Y A;  4IZ7 B;  4FH0 A;  4LWD A;  3EZQ B;  1CWW A;  3J6J A;  2L9M A;  2DBD A;  2D96 A;  1Z6T A;  3T6P A;  4N1K A;  4P4H I;  4NQK A;  2MB9 A;  4M9S A;  3LQQ A;  2YVI A;  2NZ7 A;  2YGS A;  2MPC A;  3KAT A;  4N1L A;  2OF5 H;  2MN4 A;  2DBG A;  2B1W A;  1YGO A;  2G7R A;  3YGS P;  2LS7 A;  3YGS C;  4I16 A;  4M9X A;  3EZQ A;  3CRD A;  2YQF A;  2F1S A;  2N80 A;  4QOB A;  1NGR A;  4UZ0 A;  4RHW A;  2BBR A;  3CL3 A;  1ICH A;  1DDF A;  1WXP A;  4RHW E;  3QF2 A;  2DO9 A;  2LWE A;  2MS7 A;  2DBH A;  4JQW A;  1CY5 A;  2N7Z A;  2P1H A;  1FAD A;  4O7Q A;  4DWN A;  2NSN A;  2A5Y B;  1A1Z A;  3MOP A;  4EWI A;  2N1F A;  4ZBW A;  2M5V A;  1D2Z B;  2N83 A;  2A9I A;  4O9L A;  3J63 A;  2BBZ A;  2GF5 A;  1WMG A;  4D8O A;  1C15 A;  2KM6 A;  2N00 A;  4JUP A;  2MS8 A;  4P4H A;  4IZA B;  2L6A A;  2N97 A;  2O71 A;  2IB1 A;  3LQR A;  4F44 A;  1UCP A;  2VGQ A;  3MOP G;  4N1J A;  1D2Z A;  2LWD A;  4E9M A;  2HM2 Q;  4O9F A;  1PN5 A;  1A1W A;  2NAQ A;  2DBF A;  4O6X A;  4M9Z A;  1WH4 A;  4A2W A;  1DGN A;  4IZ5 E;  1E41 A;  2KN6 A;  3MOP K; 
#chains in the Genus database with same CATH topology
 1N3K A;  4F42 A;  2YU0 A;  2OF5 A;  4A2Q A;  1E3Y A;  4IZ7 B;  4FH0 A;  4LWD A;  3EZQ B;  1CWW A;  3J6J A;  2L9M A;  2DBD A;  2D96 A;  1Z6T A;  3T6P A;  4N1K A;  4P4H I;  4NQK A;  2MB9 A;  4M9S A;  3LQQ A;  2YVI A;  2NZ7 A;  2YGS A;  2MPC A;  3KAT A;  4N1L A;  2OF5 H;  2MN4 A;  2DBG A;  2B1W A;  1YGO A;  2G7R A;  3YGS P;  2LS7 A;  3YGS C;  4I16 A;  4M9X A;  3EZQ A;  3CRD A;  2YQF A;  2F1S A;  2N80 A;  4QOB A;  1NGR A;  4UZ0 A;  4RHW A;  2BBR A;  3CL3 A;  1ICH A;  1DDF A;  1WXP A;  4RHW E;  3QF2 A;  2DO9 A;  2LWE A;  2MS7 A;  2DBH A;  4JQW A;  2XV9 A;  1CY5 A;  2N7Z A;  2P1H A;  1FAD A;  4O7Q A;  4DWN A;  2NSN A;  2A5Y B;  1A1Z A;  3MOP A;  4EWI A;  2N1F A;  4ZBW A;  2M5V A;  1D2Z B;  2N83 A;  2A9I A;  4O9L A;  3J63 A;  2BBZ A;  2GF5 A;  1WMG A;  4D8O A;  1C15 A;  2KM6 A;  2N00 A;  4JUP A;  2MS8 A;  4P4H A;  4IZA B;  2L6A A;  2N97 A;  2O71 A;  2IB1 A;  3LQR A;  4F44 A;  1UCP A;  2MJM A;  2VGQ A;  3MOP G;  4N1J A;  1D2Z A;  2LWD A;  4E9M A;  2HM2 Q;  4O9F A;  1PN5 A;  1A1W A;  2NAQ A;  2DBF A;  4O6X A;  4M9Z A;  1WH4 A;  4A2W A;  1DGN A;  4IZ5 E;  1E41 A;  2KN6 A;  3MOP K; 
#chains in the Genus database with same CATH homology
 1N3K A;  4F42 A;  2YU0 A;  2OF5 A;  4A2Q A;  1E3Y A;  4IZ7 B;  4FH0 A;  4LWD A;  3EZQ B;  1CWW A;  3J6J A;  2L9M A;  2DBD A;  2D96 A;  1Z6T A;  3T6P A;  4N1K A;  4P4H I;  4NQK A;  2MB9 A;  4M9S A;  3LQQ A;  2YVI A;  2NZ7 A;  2YGS A;  2MPC A;  3KAT A;  4N1L A;  2OF5 H;  2MN4 A;  2DBG A;  2B1W A;  1YGO A;  2G7R A;  3YGS P;  2LS7 A;  3YGS C;  4I16 A;  4M9X A;  3EZQ A;  3CRD A;  2YQF A;  2F1S A;  2N80 A;  4QOB A;  1NGR A;  4UZ0 A;  4RHW A;  2BBR A;  3CL3 A;  1ICH A;  1DDF A;  1WXP A;  4RHW E;  3QF2 A;  2DO9 A;  2LWE A;  2MS7 A;  2DBH A;  4JQW A;  2XV9 A;  1CY5 A;  2N7Z A;  2P1H A;  1FAD A;  4O7Q A;  4DWN A;  2NSN A;  2A5Y B;  1A1Z A;  3MOP A;  4EWI A;  2N1F A;  4ZBW A;  2M5V A;  1D2Z B;  2N83 A;  2A9I A;  4O9L A;  3J63 A;  2BBZ A;  2GF5 A;  1WMG A;  4D8O A;  1C15 A;  2KM6 A;  2N00 A;  4JUP A;  2MS8 A;  4P4H A;  4IZA B;  2L6A A;  2N97 A;  2O71 A;  2IB1 A;  3LQR A;  4F44 A;  1UCP A;  2MJM A;  2VGQ A;  3MOP G;  4N1J A;  1D2Z A;  2LWD A;  4E9M A;  2HM2 Q;  4O9F A;  1PN5 A;  1A1W A;  2NAQ A;  2DBF A;  4O6X A;  4M9Z A;  1WH4 A;  4A2W A;  1DGN A;  4IZ5 E;  1E41 A;  2KN6 A;  3MOP K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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