3CSNA

Structure of the serratia marcescens hemophore receptor hasr in complex with its hemophore hasa
Total Genus 204
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
204
sequence length
753
structure length
753
Chain Sequence
NDWVYDEPRSVSVISREQMDNRPARHAADILEQTTGAYSSVSQQDPALSVNIRGIQDYGRVNMNIDGMRQNFQKSGHGQRNGTMYIDSELLSGVTIDKGTTGGMGSAGTLGGIATFNTVSASDFLAPGKELGGKLHASTGDNGTHFIGSGILALGNETGDILLAASERHLGDYWPGNKGDIGNIRINNDTGNYDRYAESIKNNKIPDTHYRMHSRLAKVGWNLPANQRLQLSYLQTQTASPIAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSLAPEDVDWLDFQAKLYYVDTQDDSDTYSTSSLLDNGYATRTRLRTYGAQAQNTSRFSLAPGHDFRANYGLEFYYDKATSDSSRQGMEGVTPAGNRSVASLFANLTYDYDGWLTLEGGLRYDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALRLTGCSTTTREDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGKSWRPPAITETLTNGSAHSSSTQYPNPFLQPERSRAWEVGFNVQQPDLWFEGDRLVAKVAYFDTKVDNYINLAIDRNKPGLVQPSIGNAAYVNNLSKTRFRGLEYQLNYDAGVFYADLTYTHMIGKNEFCSNKAWLGGRLRYGDGSRRGNFYVEPDAASNDFVTCDGGTQFGSAAYLPGDRGSVTLGGRAFDRKLDAGVTVRFAPGYQDSSVPSNYPYLADWPKYTLFDLYASYKLTDSLTLRGSVENLTNRAYVVSYGETLANTLGRGRTVQGGVEYRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein/heme binding protein
molecule keywords HasR protein
publication title Heme uptake across the outer membrane as revealed by crystal structures of the receptor-hemophore complex.
pubmed doi rcsb
source organism Serratia marcescens
total genus 204
structure length 753
sequence length 753
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 3csnA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 3csnA01
1FI1A 3M8BA 2W16A 2W78A 4B7OA 2W75A 4RDTA 1XKHA 1NQHA 3FHHA 1QJQA 1UJWA 4AIPA 1FEPA 2GSKA 4EPAA 2HDFA 1NQGA 2GRXA 2GUFA 1NQEA 2W77A 2O5PA 2HDIA 2IAHA 1KMPA 3CSNA 3QLBA 3RGMA 4AIQA 1BY3A 2FCPA 1KMOA 2W76A 1PNZA 3M8DA 3V89A 1BY5A 1XKWA 1PO3A 4RDRA 1QFGA 1PO0A 3DDRA 4CU4A 3CSLA 1QFFA 2W6UA 1FCPA 3RGNA 2W6TA 2YSUA 1QKCA 5FOKA 1NQFA 3V8XA 3EFMA
chains in the Genus database with same CATH superfamily
1FI1A 1MPNA 3M8BA 1QKCA 2W16A 2W78A 1MPQA 4B7OA 2W75A 3V8XA 4RDTA 1XKHA 1NQHA 3FHHA 1QJQA 1UJWA 4AIPA 1FEPA 2GSKA 4EPAA 2HDFA 1NQGA 2GRXA 2MPRA 1AF6A 1OH2P 2GUFA 2W77A 1JBIA 2O5PA 2HDIA 2IAHA 1KMPA 3CSNA 3QLBA 3RGMA 4AIQA 1BY3A 2FCPA 1OH2Q 1MALA 1KMOA 1PNZA 1MPOA 2W76A 3M8DA 1MPRA 3V89A 1BY5A 1XKWA 1PO3A 4RDRA 1MPMA 1QFGA 1PO0A 3DDRA 4CU4A 1A0SP 3CSLA 1QFFA 2W6UA 1FCPA 3RGNA 2W6TA 2YSUA 1NQEA 5FOKA 1NQFA 1A0TP 3EFMA
chains in the Genus database with same CATH topology
1FI1A 3M8BA 2W16A 2W78A 4B7OA 2W75A 4RDTA 1XKHA 1NQHA 3FHHA 1QJQA 1UJWA 4AIPA 1FEPA 2GSKA 4EPAA 2HDFA 1NQGA 2GRXA 2GUFA 1NQEA 2W77A 2O5PA 2HDIA 2IAHA 1KMPA 3CSNA 3QLBA 3RGMA 4AIQA 1BY3A 2FCPA 1KMOA 2W76A 1PNZA 3M8DA 3V89A 1BY5A 1XKWA 1PO3A 4RDRA 1QFGA 1PO0A 3DDRA 4CU4A 3CSLA 1QFFA 2W6UA 1FCPA 3RGNA 2W6TA 2YSUA 1QKCA 5FOKA 1NQFA 3V8XA 3EFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FI1 A;  3M8B A;  2W16 A;  2W78 A;  4B7O A;  2W75 A;  4RDT A;  1XKH A;  1NQH A;  3FHH A;  1QJQ A;  1UJW A;  4AIP A;  1FEP A;  2GSK A;  4EPA A;  2HDF A;  1NQG A;  2GRX A;  2GUF A;  1NQE A;  2W77 A;  2O5P A;  2HDI A;  2IAH A;  1KMP A;  3CSN A;  3QLB A;  3RGM A;  4AIQ A;  1BY3 A;  2FCP A;  1KMO A;  2W76 A;  1PNZ A;  3M8D A;  3V89 A;  1BY5 A;  1XKW A;  1PO3 A;  4RDR A;  1QFG A;  1PO0 A;  3DDR A;  4CU4 A;  3CSL A;  1QFF A;  2W6U A;  1FCP A;  3RGN A;  2W6T A;  2YSU A;  1QKC A;  5FOK A;  1NQF A;  3V8X A;  3EFM A; 
#chains in the Genus database with same CATH topology
 1FI1 A;  1MPN A;  3M8B A;  1QKC A;  2W16 A;  2W78 A;  1MPQ A;  4B7O A;  2W75 A;  3V8X A;  4RDT A;  1XKH A;  1NQH A;  3FHH A;  1QJQ A;  1UJW A;  4AIP A;  1FEP A;  2GSK A;  4EPA A;  2HDF A;  1NQG A;  2GRX A;  2MPR A;  1AF6 A;  1OH2 P;  2GUF A;  2W77 A;  1JBI A;  2O5P A;  2HDI A;  2IAH A;  1KMP A;  3CSN A;  3QLB A;  3RGM A;  4AIQ A;  1BY3 A;  2FCP A;  1OH2 Q;  1MAL A;  1KMO A;  1PNZ A;  1MPO A;  2W76 A;  3M8D A;  1MPR A;  3V89 A;  1BY5 A;  1XKW A;  1PO3 A;  4RDR A;  1MPM A;  1QFG A;  1PO0 A;  3DDR A;  4CU4 A;  1A0S P;  3CSL A;  1QFF A;  2W6U A;  1FCP A;  3RGN A;  2W6T A;  2YSU A;  1NQE A;  5FOK A;  1NQF A;  1A0T P;  3EFM A; 
#chains in the Genus database with same CATH homology
 1FI1 A;  3M8B A;  2W16 A;  2W78 A;  4B7O A;  2W75 A;  4RDT A;  1XKH A;  1NQH A;  3FHH A;  1QJQ A;  1UJW A;  4AIP A;  1FEP A;  2GSK A;  4EPA A;  2HDF A;  1NQG A;  2GRX A;  2GUF A;  1NQE A;  2W77 A;  2O5P A;  2HDI A;  2IAH A;  1KMP A;  3CSN A;  3QLB A;  3RGM A;  4AIQ A;  1BY3 A;  2FCP A;  1KMO A;  2W76 A;  1PNZ A;  3M8D A;  3V89 A;  1BY5 A;  1XKW A;  1PO3 A;  4RDR A;  1QFG A;  1PO0 A;  3DDR A;  4CU4 A;  3CSL A;  1QFF A;  2W6U A;  1FCP A;  3RGN A;  2W6T A;  2YSU A;  1QKC A;  5FOK A;  1NQF A;  3V8X A;  3EFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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