3CXCE

The structure of an enhanced oxazolidinone inhibitor bound to the 50s ribosomal subunit of h. marismortui
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
publication title Design at the atomic level: design of biaryloxazolidinones as potent orally active antibiotics.
pubmed doi rcsb
total genus 37
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2008-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cxcE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 3cxcE01
3CCSE 4IOAE 4IO9E 1VQ9E 3CC2E 1VQNE 1YI2E 5HL7E 3G6EE 1KD1G 1M1KG 3DLLE 1K73G 5MLCH 4WFBE 5AN9B 2CQLA 1YJNE 1YIJE 5GAEG 2OTLE 1Q81G 3CCRE 3CC4E 1RL6A 2OTJE 1YHQE 2QA4E 1VQ7E 4WCEE 1K8AG 1VQPE 3J7ZG 1VQKE 3CCVE 3CPWE 1VQME 4WFNE 2QEXE 1QVFE 5H1SI 3OW2E 1M90G 5DM6E 5GAGG 3CXCE 5JVHE 1Q82G 1QVGE 4WF9E 3CD6E 2ZJPE 1KQSE 1KC8G 3CCQE 1K9MG 4U67E 3G4SE 5JVGE 1S72E 2ZJRE 1YITE 3CCME 3CCJE 3CC7E 1VQOE 1Q86G 1VQ5E 3CCLE 4IOCE 3CMAE 3G71E 1JJ2E 3PIPE 3CF5E 1VQ4E 2ZJQE 3I55E 4WFAE 5GAHG 3CCEE 4UY8G 3CCUE 1N8RG 5GADG 3PIOE 1YJWE 1VQ6E 1W2BE 1VQLE 1NJIG 1YJ9E 3I56E 1VQ8E 5DM7E 3CMEE 1Q7YG
chains in the Genus database with same CATH superfamily
3CCSE 4IOAE 3IG9A 4IO9E 3EC5A 1VQ9E 3CC2E 2OY7A 1VQNE 1YI2E 5HL7E 3G6EE 1KD1G 1M1KG 3DLLE 1K73G 2PI3O 5MLCH 4WFBE 5AN9B 2CQLA 1YJNE 1YIJE 5GAEG 2OTLE 1Q81G 3CCRE 3CC4E 1RL6A 2OL6O 2OTJE 2AF5A 1YHQE 5B10O 2QA4E 3AUMO 1VQ7E 4WCEE 2HKDA 1K8AG 1RJLC 1VQPE 3J7ZG 1VQKE 3CCVE 3CPWE 1VQME 4WFNE 2QEXE 1QVFE 5H1SI 3OW2E 1M90G 5DM6E 5GAGG 1OSPO 3CXCE 5B3MO 5JVHE 1Q82G 1QVGE 4WF9E 3CD6E 2ZJPE 1KQSE 1KC8G 2OYBO 3CCQE 1K9MG 4U67E 3G4SE 5JVGE 1P4PA 2OY1O 1S72E 2ZJRE 1FJ1E 1YITE 3CKFA 3CCME 2G8CO 3CC7E 3CCJE 1VQOE 1Q86G 3IGEA 1VQ5E 3CCLE 2OY5O 4IOCE 3CMAE 3G71E 1JJ2E 2I5ZO 3PIPE 2FKGA 3CF5E 1VQ4E 2ZJQE 3I55E 4WFAE 5GAHG 3CCEE 2I5VO 4UY8G 2OL7A 5B11O 5B2AO 3CCUE 1N8RG 2OY8A 5GADG 3PIOE 1YJWE 1VQ6E 1W2BE 1VQLE 2FKJA 1NJIG 2OL8O 1YJ9E 3I56E 3CKGA 1VQ8E 5DM7E 3CMEE 1Q7YG
chains in the Genus database with same CATH topology
3CCSE 4IOAE 4IO9E 1VQ9E 3CC2E 1VQNE 1YI2E 5HL7E 3G6EE 1KD1G 1M1KG 3DLLE 1K73G 5MLCH 4WFBE 5AN9B 2CQLA 1YJNE 1YIJE 5GAEG 2OTLE 1Q81G 3CCRE 3CC4E 1RL6A 2OTJE 1YHQE 2QA4E 1VQ7E 4WCEE 1K8AG 1VQPE 3J7ZG 1VQKE 3CCVE 3CPWE 1VQME 4WFNE 2QEXE 1QVFE 5H1SI 3OW2E 1M90G 5DM6E 5GAGG 3CXCE 5JVHE 1Q82G 1QVGE 4WF9E 3CD6E 2ZJPE 1KQSE 1KC8G 3CCQE 1K9MG 4U67E 3G4SE 5JVGE 1S72E 2ZJRE 1YITE 3CCME 3CCJE 3CC7E 1VQOE 1Q86G 1VQ5E 3CCLE 4IOCE 3CMAE 3G71E 1JJ2E 3PIPE 3CF5E 1VQ4E 2ZJQE 3I55E 4WFAE 5GAHG 3CCEE 4UY8G 3CCUE 1N8RG 5GADG 3PIOE 1YJWE 1VQ6E 1W2BE 1VQLE 1NJIG 1YJ9E 3I56E 1VQ8E 5DM7E 3CMEE 1Q7YG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCS E;  4IOA E;  4IO9 E;  1VQ9 E;  3CC2 E;  1VQN E;  1YI2 E;  5HL7 E;  3G6E E;  1KD1 G;  1M1K G;  3DLL E;  1K73 G;  5MLC H;  4WFB E;  5AN9 B;  2CQL A;  1YJN E;  1YIJ E;  5GAE G;  2OTL E;  1Q81 G;  3CCR E;  3CC4 E;  1RL6 A;  2OTJ E;  1YHQ E;  2QA4 E;  1VQ7 E;  4WCE E;  1K8A G;  1VQP E;  3J7Z G;  1VQK E;  3CCV E;  3CPW E;  1VQM E;  4WFN E;  2QEX E;  1QVF E;  5H1S I;  3OW2 E;  1M90 G;  5DM6 E;  5GAG G;  3CXC E;  5JVH E;  1Q82 G;  1QVG E;  4WF9 E;  3CD6 E;  2ZJP E;  1KQS E;  1KC8 G;  3CCQ E;  1K9M G;  4U67 E;  3G4S E;  5JVG E;  1S72 E;  2ZJR E;  1YIT E;  3CCM E;  3CCJ E;  3CC7 E;  1VQO E;  1Q86 G;  1VQ5 E;  3CCL E;  4IOC E;  3CMA E;  3G71 E;  1JJ2 E;  3PIP E;  3CF5 E;  1VQ4 E;  2ZJQ E;  3I55 E;  4WFA E;  5GAH G;  3CCE E;  4UY8 G;  3CCU E;  1N8R G;  5GAD G;  3PIO E;  1YJW E;  1VQ6 E;  1W2B E;  1VQL E;  1NJI G;  1YJ9 E;  3I56 E;  1VQ8 E;  5DM7 E;  3CME E;  1Q7Y G; 
#chains in the Genus database with same CATH topology
 3CCS E;  4IOA E;  3IG9 A;  4IO9 E;  3EC5 A;  1VQ9 E;  3CC2 E;  2OY7 A;  1VQN E;  1YI2 E;  5HL7 E;  3G6E E;  1KD1 G;  1M1K G;  3DLL E;  1K73 G;  2PI3 O;  5MLC H;  4WFB E;  5AN9 B;  2CQL A;  1YJN E;  1YIJ E;  5GAE G;  2OTL E;  1Q81 G;  3CCR E;  3CC4 E;  1RL6 A;  2OL6 O;  2OTJ E;  2AF5 A;  1YHQ E;  5B10 O;  2QA4 E;  3AUM O;  1VQ7 E;  4WCE E;  2HKD A;  1K8A G;  1RJL C;  1VQP E;  3J7Z G;  1VQK E;  3CCV E;  3CPW E;  1VQM E;  4WFN E;  2QEX E;  1QVF E;  5H1S I;  3OW2 E;  1M90 G;  5DM6 E;  5GAG G;  1OSP O;  3CXC E;  5B3M O;  5JVH E;  1Q82 G;  1QVG E;  4WF9 E;  3CD6 E;  2ZJP E;  1KQS E;  1KC8 G;  2OYB O;  3CCQ E;  1K9M G;  4U67 E;  3G4S E;  5JVG E;  1P4P A;  2OY1 O;  1S72 E;  2ZJR E;  1FJ1 E;  1YIT E;  3CKF A;  3CCM E;  2G8C O;  3CC7 E;  3CCJ E;  1VQO E;  1Q86 G;  3IGE A;  1VQ5 E;  3CCL E;  2OY5 O;  4IOC E;  3CMA E;  3G71 E;  1JJ2 E;  2I5Z O;  3PIP E;  2FKG A;  3CF5 E;  1VQ4 E;  2ZJQ E;  3I55 E;  4WFA E;  5GAH G;  3CCE E;  2I5V O;  4UY8 G;  2OL7 A;  5B11 O;  5B2A O;  3CCU E;  1N8R G;  2OY8 A;  5GAD G;  3PIO E;  1YJW E;  1VQ6 E;  1W2B E;  1VQL E;  2FKJ A;  1NJI G;  2OL8 O;  1YJ9 E;  3I56 E;  3CKG A;  1VQ8 E;  5DM7 E;  3CME E;  1Q7Y G; 
#chains in the Genus database with same CATH homology
 3CCS E;  4IOA E;  4IO9 E;  1VQ9 E;  3CC2 E;  1VQN E;  1YI2 E;  5HL7 E;  3G6E E;  1KD1 G;  1M1K G;  3DLL E;  1K73 G;  5MLC H;  4WFB E;  5AN9 B;  2CQL A;  1YJN E;  1YIJ E;  5GAE G;  2OTL E;  1Q81 G;  3CCR E;  3CC4 E;  1RL6 A;  2OTJ E;  1YHQ E;  2QA4 E;  1VQ7 E;  4WCE E;  1K8A G;  1VQP E;  3J7Z G;  1VQK E;  3CCV E;  3CPW E;  1VQM E;  4WFN E;  2QEX E;  1QVF E;  5H1S I;  3OW2 E;  1M90 G;  5DM6 E;  5GAG G;  3CXC E;  5JVH E;  1Q82 G;  1QVG E;  4WF9 E;  3CD6 E;  2ZJP E;  1KQS E;  1KC8 G;  3CCQ E;  1K9M G;  4U67 E;  3G4S E;  5JVG E;  1S72 E;  2ZJR E;  1YIT E;  3CCM E;  3CCJ E;  3CC7 E;  1VQO E;  1Q86 G;  1VQ5 E;  3CCL E;  4IOC E;  3CMA E;  3G71 E;  1JJ2 E;  3PIP E;  3CF5 E;  1VQ4 E;  2ZJQ E;  3I55 E;  4WFA E;  5GAH G;  3CCE E;  4UY8 G;  3CCU E;  1N8R G;  5GAD G;  3PIO E;  1YJW E;  1VQ6 E;  1W2B E;  1VQL E;  1NJI G;  1YJ9 E;  3I56 E;  1VQ8 E;  5DM7 E;  3CME E;  1Q7Y G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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