3D03A

1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
274
structure length
274
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 83
structure length 274
sequence length 274
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3d03A02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3d03A01
2ZOAA 2DXNA 2DXLA 3D03A 2ZO9B
chains in the Genus database with same CATH superfamily
3T6OA 3AGEA 2OASA 1SBOA 2XMOA 3GVKA 1TH8B 3D03A 4AEJA 2NYLC 1UF3A 2WDFA 1TIDB 3H60A 4FCXA 4DHLA 5EUZA 3LLOA 1II7A 3C9FA 1M63A 1VC1A 2YEQA 3H64A 2JOGA 3LKLA 2RRLA 4GHNA 4J6OA 2KA5A 2GJUA 3DJAA 3NY7A 2WDCA 3C5WC 3H69A 3QFOA 4HIZA 1T70A 2USHA 1H4XA 3IH9A 3F43A 1N6FA 3OIZA 4HYLA 3AUZA 5B8IA 3ZTVA 1N6EA 2Q8UA 3JYFA 1NNWA 4QTPA 2NPPC 2QFRA 3E7AA 1S70A 4H2GA 3QFMA 3ICFA 3CK2A 4NZVA 4I5LC 4V0XA 3KBPA 1S3LA 4H2BA 3RL3A 3THNA 4FBWA 4YKEA 4JC0A 3H63A 5J28A 1J7XA 5JPFA 1FJMA 1WAO1 3AV0A 1S8EA 5HPEA 3FLOA 3K50A 3PSOA 4ORCA 3IH8A 3QDQA 2O8GA 1S3MA 4ORBA 2B78A 3EH7A 3OIRA 1XM7A 2HY1A 2IAEC 1OI8A 2CV9A 2Z1AA 3DW8C 2VY9A 4MOYA 3THOB 1FC7A 3GHFA 4FBKA 1FCFA 1HF2A 3GVJA 3E0JA 1H4YA 3GVLA 4F0ZA 3AGDA 4ZVZA 4TUIA 4UT3B 3K7WC 1FC6A 1S3NA 4O43A 1SU1A 3ZU0A 4KBPA 1OIDA 5JJTA 3EGGA 1T71A 3QG5C 4ZX2A 1FC9A 5EUXA 2HYOA 3H62B 2WDDA 4MP0A 3V4YA 1U32A 1WARA 3IHBA 1AUIA 1UTEA 5DNYA 3IB8A 3EGHA 4L8KA 4LTYA 3T1IA 5C1VA 3LDFA 1HP1A 3DUPA 1OIEA 2BCDA 4H2FA 1WXXA 3QFKA 4I5NC 3V97A 4DMGA 5JPEA 4DSYA 1KBPA 1V0FA 1HPUA 2BDXA 4B2OA 4XS5A 1QFCA 2AHDA 4IYPC 5INBA 1WXWA 2KKNA 3DSDA 3C0KA 2BQ8X 2CWWA 3D3UA 2QFPA 4G9JA 4KKZA 4HD0A 4XPNA 3RL4A 2DXLA 4O4KA 5EUWA 4DGHA 1HO5A 4H2IA 4V0VA 3H68A 4DGFA 3P71C 1G5BA 1XZWA 5EUSA 1S95A 4O24A 2KLNA 4Q7FA 4ORAA 5EQVA 3DORA 2YVTA 1V0EA 3IB7A 5EUUA 1Z2XA 5F3WA 2AS0A 4AE2A 3GMFA 3FGAC 1Z2WA 5IOHA 3MOGA 4JA9A 4L1CA 3IVEA 2R17A 2QJCA 2DXNA 2HYPA 2WDEA 3IHAA 3DSCA 3H61A 4FBQA 3H66A 3GVEA 3PSNA 3GK7A 1N6DA 3RQZA 2P6BA 3TGHA 2DFJA 4JA7A 3QFNA 3IVDA 3K7VC 3V8VA 3H67A 4UWQA 3HVQA 1JK7A 2NYMC 4LACC 4H1YP 1THNB 1QHWA 4LU9A 2Z72A 1USHA 1BUZA 1MF8A 4UT3A 4WWLA 3E7BA 1H4ZA 3MGLA 1W24A 2A22A 1IT6A 4OR9A 3N5UA 4V0WA 1K32A 1AUZA 3RL5A 4TUGA 1BPLA 2IE3C 4MOVA 3VSEA 1TILB 2ZOAA 2Z06A 3ZTBA 5EZBA 2NXFA 2ZBMA 4IL1A 4UT2A 3LL8A 1T6RA 4O5GA 2IE4C 5GTUA 4M0VA 3ZXNA 1TCOA 1V73A 4DT2A 3IF5A 4H1SA 2ZO9B 3JU4A 2O8AA
chains in the Genus database with same CATH topology
2XMOA 4AEJA 3H60A 3D03A 2NYLC 2WDFA 1UF3A 4DHLA 4FCXA 1II7A 3C9FA 1M63A 2YEQA 3H64A 2JOGA 2RRLA 4GHNA 4J6OA 2GJUA 3DJAA 2WDCA 3C5WC 3H69A 3QFOA 1T70A 2USHA 3AUZA 1N6FA 5B8IA 3ZTVA 1N6EA 2Q8UA 3JYFA 1NNWA 2NPPC 2QFRA 3E7AA 1S70A 4H2GA 3QFMA 3ICFA 3CK2A 4NZVA 4I5LC 4V0XA 3KBPA 1S3LA 4H2BA 3RL3A 3THNA 4FBWA 4YKEA 4JC0A 3H63A 5J28A 1J7XA 5JPFA 1FJMA 1WAO1 3AV0A 1S8EA 5HPEA 3FLOA 3K50A 3PSOA 4ORCA 4ORBA 2O8GA 1S3MA 1XM7A 2HY1A 3DW8C 4JA7A 2IAEC 2Z1AA 1OI8A 2CV9A 4MOYA 3THOB 1FC7A 3GHFA 4FBKA 1FCFA 3E0JA 4F0ZA 4ZVZA 4TUIA 4UT3B 3K7WC 1FC6A 1S3NA 4O43A 1SU1A 3ZU0A 4KBPA 1OIDA 5JJTA 3EGGA 1T71A 3QG5C 4ZX2A 1FC9A 2HYOA 5IOHA 3H62B 2WDDA 4MP0A 3V4YA 1U32A 1WARA 1AUIA 1UTEA 5DNYA 3IB8A 3EGHA 4L8KA 4LTYA 3T1IA 5C1VA 1HP1A 1OIEA 3DUPA 2BCDA 4H2FA 3QFKA 4I5NC 5JPEA 4DSYA 1KBPA 2BDXA 1HPUA 4B2OA 1QFCA 4IYPC 5INBA 2KKNA 3DSDA 2BQ8X 2QFPA 4G9JA 4KKZA 4HD0A 4XPNA 3RL4A 2DXLA 4O4KA 1HO5A 4V0VA 4H2IA 3H68A 3P71C 1G5BA 1XZWA 1S95A 4O24A 4Q7FA 5EQVA 4ORAA 3DORA 2YVTA 3IB7A 1Z2XA 5F3WA 3FGAC 4AE2A 3GMFA 1Z2WA 3MOGA 4JA9A 4L1CA 3IVEA 2R17A 2QJCA 2DXNA 2HYPA 2WDEA 3DSCA 3H61A 4FBQA 3H66A 3GVEA 3PSNA 1N6DA 3RQZA 2P6BA 3TGHA 2DFJA 3QFNA 3IVDA 3K7VC 3H67A 4UWQA 3HVQA 1JK7A 2NYMC 4LACC 4H1YP 1QHWA 4LU9A 2Z72A 1USHA 1MF8A 4UT3A 4WWLA 3E7BA 1W24A 4OR9A 2A22A 4V0WA 3RL5A 3N5UA 4TUGA 1K32A 1BPLA 2IE3C 4MOVA 2ZOAA 2Z06A 2NXFA 4IL1A 2ZBMA 4UT2A 3LL8A 4O5GA 5GTUA 2IE4C 4M0VA 1TCOA 1V73A 4DT2A 1IT6A 4H1SA 2ZO9B 2AHDA 2O8AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  2DXN A;  2DXL A;  3D03 A;  2ZO9 B; 
#chains in the Genus database with same CATH topology
 3T6O A;  3AGE A;  2OAS A;  1SBO A;  2XMO A;  3GVK A;  1TH8 B;  3D03 A;  4AEJ A;  2NYL C;  1UF3 A;  2WDF A;  1TID B;  3H60 A;  4FCX A;  4DHL A;  5EUZ A;  3LLO A;  1II7 A;  3C9F A;  1M63 A;  1VC1 A;  2YEQ A;  3H64 A;  2JOG A;  3LKL A;  2RRL A;  4GHN A;  4J6O A;  2KA5 A;  2GJU A;  3DJA A;  3NY7 A;  2WDC A;  3C5W C;  3H69 A;  3QFO A;  4HIZ A;  1T70 A;  2USH A;  1H4X A;  3IH9 A;  3F43 A;  1N6F A;  3OIZ A;  4HYL A;  3AUZ A;  5B8I A;  3ZTV A;  1N6E A;  2Q8U A;  3JYF A;  1NNW A;  4QTP A;  2NPP C;  2QFR A;  3E7A A;  1S70 A;  4H2G A;  3QFM A;  3ICF A;  3CK2 A;  4NZV A;  4I5L C;  4V0X A;  3KBP A;  1S3L A;  4H2B A;  3RL3 A;  3THN A;  4FBW A;  4YKE A;  4JC0 A;  3H63 A;  5J28 A;  1J7X A;  5JPF A;  1FJM A;  1WAO 1;  3AV0 A;  1S8E A;  5HPE A;  3FLO A;  3K50 A;  3PSO A;  4ORC A;  3IH8 A;  3QDQ A;  2O8G A;  1S3M A;  4ORB A;  2B78 A;  3EH7 A;  3OIR A;  1XM7 A;  2HY1 A;  2IAE C;  1OI8 A;  2CV9 A;  2Z1A A;  3DW8 C;  2VY9 A;  4MOY A;  3THO B;  1FC7 A;  3GHF A;  4FBK A;  1FCF A;  1HF2 A;  3GVJ A;  3E0J A;  1H4Y A;  3GVL A;  4F0Z A;  3AGD A;  4ZVZ A;  4TUI A;  4UT3 B;  3K7W C;  1FC6 A;  1S3N A;  4O43 A;  1SU1 A;  3ZU0 A;  4KBP A;  1OID A;  5JJT A;  3EGG A;  1T71 A;  3QG5 C;  4ZX2 A;  1FC9 A;  5EUX A;  2HYO A;  3H62 B;  2WDD A;  4MP0 A;  3V4Y A;  1U32 A;  1WAR A;  3IHB A;  1AUI A;  1UTE A;  5DNY A;  3IB8 A;  3EGH A;  4L8K A;  4LTY A;  3T1I A;  5C1V A;  3LDF A;  1HP1 A;  3DUP A;  1OIE A;  2BCD A;  4H2F A;  1WXX A;  3QFK A;  4I5N C;  3V97 A;  4DMG A;  5JPE A;  4DSY A;  1KBP A;  1V0F A;  1HPU A;  2BDX A;  4B2O A;  4XS5 A;  1QFC A;  2AHD A;  4IYP C;  5INB A;  1WXW A;  2KKN A;  3DSD A;  3C0K A;  2BQ8 X;  2CWW A;  3D3U A;  2QFP A;  4G9J A;  4KKZ A;  4HD0 A;  4XPN A;  3RL4 A;  2DXL A;  4O4K A;  5EUW A;  4DGH A;  1HO5 A;  4H2I A;  4V0V A;  3H68 A;  4DGF A;  3P71 C;  1G5B A;  1XZW A;  5EUS A;  1S95 A;  4O24 A;  2KLN A;  4Q7F A;  4ORA A;  5EQV A;  3DOR A;  2YVT A;  1V0E A;  3IB7 A;  5EUU A;  1Z2X A;  5F3W A;  2AS0 A;  4AE2 A;  3GMF A;  3FGA C;  1Z2W A;  5IOH A;  3MOG A;  4JA9 A;  4L1C A;  3IVE A;  2R17 A;  2QJC A;  2DXN A;  2HYP A;  2WDE A;  3IHA A;  3DSC A;  3H61 A;  4FBQ A;  3H66 A;  3GVE A;  3PSN A;  3GK7 A;  1N6D A;  3RQZ A;  2P6B A;  3TGH A;  2DFJ A;  4JA7 A;  3QFN A;  3IVD A;  3K7V C;  3V8V A;  3H67 A;  4UWQ A;  3HVQ A;  1JK7 A;  2NYM C;  4LAC C;  4H1Y P;  1THN B;  1QHW A;  4LU9 A;  2Z72 A;  1USH A;  1BUZ A;  1MF8 A;  4UT3 A;  4WWL A;  3E7B A;  1H4Z A;  3MGL A;  1W24 A;  2A22 A;  1IT6 A;  4OR9 A;  3N5U A;  4V0W A;  1K32 A;  1AUZ A;  3RL5 A;  4TUG A;  1BPL A;  2IE3 C;  4MOV A;  3VSE A;  1TIL B;  2ZOA A;  2Z06 A;  3ZTB A;  5EZB A;  2NXF A;  2ZBM A;  4IL1 A;  4UT2 A;  3LL8 A;  1T6R A;  4O5G A;  2IE4 C;  5GTU A;  4M0V A;  3ZXN A;  1TCO A;  1V73 A;  4DT2 A;  3IF5 A;  4H1S A;  2ZO9 B;  3JU4 A;  2O8A A; 
#chains in the Genus database with same CATH homology
 2XMO A;  4AEJ A;  3H60 A;  3D03 A;  2NYL C;  2WDF A;  1UF3 A;  4DHL A;  4FCX A;  1II7 A;  3C9F A;  1M63 A;  2YEQ A;  3H64 A;  2JOG A;  2RRL A;  4GHN A;  4J6O A;  2GJU A;  3DJA A;  2WDC A;  3C5W C;  3H69 A;  3QFO A;  1T70 A;  2USH A;  3AUZ A;  1N6F A;  5B8I A;  3ZTV A;  1N6E A;  2Q8U A;  3JYF A;  1NNW A;  2NPP C;  2QFR A;  3E7A A;  1S70 A;  4H2G A;  3QFM A;  3ICF A;  3CK2 A;  4NZV A;  4I5L C;  4V0X A;  3KBP A;  1S3L A;  4H2B A;  3RL3 A;  3THN A;  4FBW A;  4YKE A;  4JC0 A;  3H63 A;  5J28 A;  1J7X A;  5JPF A;  1FJM A;  1WAO 1;  3AV0 A;  1S8E A;  5HPE A;  3FLO A;  3K50 A;  3PSO A;  4ORC A;  4ORB A;  2O8G A;  1S3M A;  1XM7 A;  2HY1 A;  3DW8 C;  4JA7 A;  2IAE C;  2Z1A A;  1OI8 A;  2CV9 A;  4MOY A;  3THO B;  1FC7 A;  3GHF A;  4FBK A;  1FCF A;  3E0J A;  4F0Z A;  4ZVZ A;  4TUI A;  4UT3 B;  3K7W C;  1FC6 A;  1S3N A;  4O43 A;  1SU1 A;  3ZU0 A;  4KBP A;  1OID A;  5JJT A;  3EGG A;  1T71 A;  3QG5 C;  4ZX2 A;  1FC9 A;  2HYO A;  5IOH A;  3H62 B;  2WDD A;  4MP0 A;  3V4Y A;  1U32 A;  1WAR A;  1AUI A;  1UTE A;  5DNY A;  3IB8 A;  3EGH A;  4L8K A;  4LTY A;  3T1I A;  5C1V A;  1HP1 A;  1OIE A;  3DUP A;  2BCD A;  4H2F A;  3QFK A;  4I5N C;  5JPE A;  4DSY A;  1KBP A;  2BDX A;  1HPU A;  4B2O A;  1QFC A;  4IYP C;  5INB A;  2KKN A;  3DSD A;  2BQ8 X;  2QFP A;  4G9J A;  4KKZ A;  4HD0 A;  4XPN A;  3RL4 A;  2DXL A;  4O4K A;  1HO5 A;  4V0V A;  4H2I A;  3H68 A;  3P71 C;  1G5B A;  1XZW A;  1S95 A;  4O24 A;  4Q7F A;  5EQV A;  4ORA A;  3DOR A;  2YVT A;  3IB7 A;  1Z2X A;  5F3W A;  3FGA C;  4AE2 A;  3GMF A;  1Z2W A;  3MOG A;  4JA9 A;  4L1C A;  3IVE A;  2R17 A;  2QJC A;  2DXN A;  2HYP A;  2WDE A;  3DSC A;  3H61 A;  4FBQ A;  3H66 A;  3GVE A;  3PSN A;  1N6D A;  3RQZ A;  2P6B A;  3TGH A;  2DFJ A;  3QFN A;  3IVD A;  3K7V C;  3H67 A;  4UWQ A;  3HVQ A;  1JK7 A;  2NYM C;  4LAC C;  4H1Y P;  1QHW A;  4LU9 A;  2Z72 A;  1USH A;  1MF8 A;  4UT3 A;  4WWL A;  3E7B A;  1W24 A;  4OR9 A;  2A22 A;  4V0W A;  3RL5 A;  3N5U A;  4TUG A;  1K32 A;  1BPL A;  2IE3 C;  4MOV A;  2ZOA A;  2Z06 A;  2NXF A;  4IL1 A;  2ZBM A;  4UT2 A;  3LL8 A;  4O5G A;  5GTU A;  2IE4 C;  4M0V A;  1TCO A;  1V73 A;  4DT2 A;  1IT6 A;  4H1S A;  2ZO9 B;  2AHD A;  2O8A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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