3D03A

1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
274
structure length
274
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 83
structure length 274
sequence length 274
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3d03A02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3d03A01
2ZOAA 2DXLA 2ZO9B 2DXNA 3D03A
chains in the Genus database with same CATH superfamily
1TILB 1II7A 1KBPA 2WDCA 4AE2A 1WXXA 3E7AA 4NZVA 4UT3B 5F3WA 3CK2A 3OIRA 4MOVA 1JK7A 2NXFA 4FBKA 1UF3A 1FC9A 4O43A 2ZBMA 4ORBA 3H68A 2DXNA 4KBPA 3LKLA 4HD0A 4O5GA 4YKEA 2IE4C 4LTYA 5INBA 4WWLA 3IH8A 3QFKA 4DSYA 2HY1A 4V0VA 4ZX2A 4FBQA 3H66A 4DGHA 2B78A 3C9FA 3FLOA 3GVJA 3DW8C 2AS0A 2QFPA 5HPEA 3MOGA 1S70A 2Z06A 2HYOA 5C1VA 2BQ8X 2NPPC 1S8EA 3N5UA 2BDXA 4FBWA 4JA9A 3GVEA 3IHAA 1UTEA 3E0JA 2BCDA 4IYPC 2A22A 3QG5C 1K32A 3DSDA 2P6BA 1HPUA 2QJCA 2USHA 1SU1A 3V8VA 1N6EA 1WXWA 1THNB 3V97A 2WDFA 3AV0A 1S3LA 2DFJA 3EGHA 3H64A 3QFMA 4H2GA 4DHLA 2O8AA 3AUZA 2Z1AA 4KKZA 1M63A 3EH7A 2IE3C 3H62B 1W24A 4MOYA 3H61A 4H1YP 2YEQA 3DJAA 4JA7A 5EUZA 4IL1A 1QHWA 1V0FA 3K7VC 4V0XA 1U32A 3QFOA 3IHBA 1Z2WA 3QDQA 1TH8B 3AGDA 3F43A 4HIZA 1OIDA 2KA5A 3D3UA 1WARA 4TUIA 5EUUA 2YVTA 1H4YA 3KBPA 1T70A 3E7BA 1SBOA 1H4XA 3DORA 5EUSA 3ZU0A 5J28A 4DMGA 4V0WA 4UT2A 5IOHA 4FCXA 3THNA 3LDFA 1AUIA 4DGFA 2JOGA 3THOB 3P71C 4LU9A 4XPNA 5GTUA 1TIDB 5EUXA 2WDEA 4L8KA 1BPLA 1V0EA 4JC0A 5EUWA 5DNYA 3D03A 3OIZA 3IB8A 4UT3A 3IF5A 3JU4A 2KKNA 4LACC 5JPEA 4UWQA 1HF2A 3V4YA 2CV9A 3IVDA 3H60A 1S3MA 3ZTBA 2VY9A 4GHNA 4ORAA 3DUPA 1T71A 3QFNA 1FC7A 4QTPA 2RRLA 4O24A 5EZBA 3MGLA 1G5BA 1Z2XA 3PSNA 4O4KA 3ZTVA 5JPFA 1XZWA 3H67A 5EQVA 3T1IA 3RL3A 5B8IA 3LLOA 2AHDA 1J7XA 2R17A 1N6FA 1TCOA 1USHA 4OR9A 5JJTA 3GVKA 2XMOA 1FCFA 1BUZA 1T6RA 2IAEC 4TUGA 3ZXNA 4G9JA 1S95A 4XS5A 1OIEA 3FGAC 1N6DA 3EGGA 3IVEA 3IB7A 4DT2A 4ZVZA 1S3NA 2NYMC 1AUZA 4I5NC 3T6OA 3RQZA 1H4ZA 3PSOA 1NNWA 3RL4A 4F0ZA 4H2FA 3GHFA 3JYFA 1FC6A 2NYLC 2QFRA 1WAO1 3H63A 2KLNA 2DXLA 4I5LC 3IH9A 3NY7A 1V73A 3K50A 1VC1A 3H69A 2Q8UA 3GMFA 3C5WC 1IT6A 4H2IA 1HO5A 1MF8A 4MP0A 4B2OA 2O8GA 3GK7A 3K7WC 2Z72A 2GJUA 1OI8A 4H1SA 3RL5A 3C0KA 4J6OA 1QFCA 4HYLA 1FJMA 2ZOAA 1XM7A 2CWWA 4H2BA 4AEJA 4M0VA 3HVQA 3LL8A 2OASA 3AGEA 3GVLA 3VSEA 4ORCA 4Q7FA 3TGHA 4L1CA 2ZO9B 2WDDA 2HYPA 1HP1A 3DSCA 3ICFA
chains in the Genus database with same CATH topology
2WDCA 1II7A 1KBPA 3E7AA 4AE2A 4NZVA 4UT3B 5F3WA 3CK2A 4MOVA 1JK7A 2NXFA 4FBKA 1UF3A 1FC9A 4O43A 2ZBMA 4ORBA 3H68A 2DXNA 4KBPA 4HD0A 4O5GA 4YKEA 3RL5A 2IE4C 4LTYA 5INBA 4WWLA 3QFKA 4DSYA 2HY1A 4V0VA 4ZX2A 4FBQA 3H66A 3C9FA 3FLOA 3DW8C 2QFPA 5HPEA 3MOGA 1S70A 2Z06A 2HYOA 5C1VA 2BQ8X 2NPPC 1S8EA 2BDXA 4FBWA 4JA9A 3GVEA 1UTEA 3E0JA 2BCDA 4IYPC 2A22A 3QG5C 1K32A 3DSDA 2P6BA 1HPUA 2QJCA 2USHA 1SU1A 3N5UA 1N6EA 2WDFA 3QFMA 4H2GA 3AV0A 1S3LA 2DFJA 3EGHA 3H64A 4DHLA 2O8AA 3AUZA 2Z1AA 4KKZA 1M63A 2IE3C 3H62B 1W24A 4MOYA 3H61A 4H1YP 2YEQA 3DJAA 4JA7A 4IL1A 1QHWA 3K7VC 4V0XA 1U32A 3QFOA 1Z2WA 4TUIA 1OIDA 1WARA 2YVTA 3KBPA 1T70A 3E7BA 3DORA 3ZU0A 5J28A 4V0WA 4UT2A 5IOHA 4FCXA 3THNA 1AUIA 2JOGA 2ZO9B 3THOB 3P71C 4LU9A 4XPNA 5GTUA 2WDEA 4L8KA 1BPLA 4JC0A 5DNYA 3D03A 3IB8A 4LACC 2KKNA 5JPEA 4UWQA 3V4YA 2CV9A 3IVDA 3H60A 1S3MA 4GHNA 4ORAA 3DUPA 1T71A 3QFNA 1FC7A 2RRLA 4O24A 1G5BA 1Z2XA 3PSNA 4O4KA 3ZTVA 5JPFA 1XZWA 3H67A 5EQVA 3T1IA 3RL3A 5B8IA 2AHDA 1J7XA 2R17A 1N6FA 1TCOA 1USHA 4OR9A 5JJTA 2XMOA 1FCFA 2IAEC 4TUGA 4G9JA 1S95A 1OIEA 3FGAC 1N6DA 3EGGA 3IVEA 3IB7A 4ZVZA 1S3NA 2NYMC 4I5NC 3RQZA 3PSOA 1NNWA 3RL4A 4F0ZA 4H2FA 3GHFA 3JYFA 2NYLC 2QFRA 1WAO1 3H63A 2DXLA 4I5LC 1V73A 3H69A 4UT3A 3K50A 4DT2A 2Q8UA 3GMFA 3C5WC 1IT6A 4H2IA 1HO5A 1MF8A 4MP0A 4B2OA 2O8GA 3K7WC 2Z72A 2GJUA 1OI8A 4H1SA 4J6OA 1QFCA 1FJMA 2ZOAA 1XM7A 4H2BA 4AEJA 4M0VA 3HVQA 3LL8A 4Q7FA 4ORCA 3TGHA 4L1CA 1FC6A 2WDDA 2HYPA 1HP1A 3DSCA 3ICFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  2DXL A;  2ZO9 B;  2DXN A;  3D03 A; 
#chains in the Genus database with same CATH topology
 1TIL B;  1II7 A;  1KBP A;  2WDC A;  4AE2 A;  1WXX A;  3E7A A;  4NZV A;  4UT3 B;  5F3W A;  3CK2 A;  3OIR A;  4MOV A;  1JK7 A;  2NXF A;  4FBK A;  1UF3 A;  1FC9 A;  4O43 A;  2ZBM A;  4ORB A;  3H68 A;  2DXN A;  4KBP A;  3LKL A;  4HD0 A;  4O5G A;  4YKE A;  2IE4 C;  4LTY A;  5INB A;  4WWL A;  3IH8 A;  3QFK A;  4DSY A;  2HY1 A;  4V0V A;  4ZX2 A;  4FBQ A;  3H66 A;  4DGH A;  2B78 A;  3C9F A;  3FLO A;  3GVJ A;  3DW8 C;  2AS0 A;  2QFP A;  5HPE A;  3MOG A;  1S70 A;  2Z06 A;  2HYO A;  5C1V A;  2BQ8 X;  2NPP C;  1S8E A;  3N5U A;  2BDX A;  4FBW A;  4JA9 A;  3GVE A;  3IHA A;  1UTE A;  3E0J A;  2BCD A;  4IYP C;  2A22 A;  3QG5 C;  1K32 A;  3DSD A;  2P6B A;  1HPU A;  2QJC A;  2USH A;  1SU1 A;  3V8V A;  1N6E A;  1WXW A;  1THN B;  3V97 A;  2WDF A;  3AV0 A;  1S3L A;  2DFJ A;  3EGH A;  3H64 A;  3QFM A;  4H2G A;  4DHL A;  2O8A A;  3AUZ A;  2Z1A A;  4KKZ A;  1M63 A;  3EH7 A;  2IE3 C;  3H62 B;  1W24 A;  4MOY A;  3H61 A;  4H1Y P;  2YEQ A;  3DJA A;  4JA7 A;  5EUZ A;  4IL1 A;  1QHW A;  1V0F A;  3K7V C;  4V0X A;  1U32 A;  3QFO A;  3IHB A;  1Z2W A;  3QDQ A;  1TH8 B;  3AGD A;  3F43 A;  4HIZ A;  1OID A;  2KA5 A;  3D3U A;  1WAR A;  4TUI A;  5EUU A;  2YVT A;  1H4Y A;  3KBP A;  1T70 A;  3E7B A;  1SBO A;  1H4X A;  3DOR A;  5EUS A;  3ZU0 A;  5J28 A;  4DMG A;  4V0W A;  4UT2 A;  5IOH A;  4FCX A;  3THN A;  3LDF A;  1AUI A;  4DGF A;  2JOG A;  3THO B;  3P71 C;  4LU9 A;  4XPN A;  5GTU A;  1TID B;  5EUX A;  2WDE A;  4L8K A;  1BPL A;  1V0E A;  4JC0 A;  5EUW A;  5DNY A;  3D03 A;  3OIZ A;  3IB8 A;  4UT3 A;  3IF5 A;  3JU4 A;  2KKN A;  4LAC C;  5JPE A;  4UWQ A;  1HF2 A;  3V4Y A;  2CV9 A;  3IVD A;  3H60 A;  1S3M A;  3ZTB A;  2VY9 A;  4GHN A;  4ORA A;  3DUP A;  1T71 A;  3QFN A;  1FC7 A;  4QTP A;  2RRL A;  4O24 A;  5EZB A;  3MGL A;  1G5B A;  1Z2X A;  3PSN A;  4O4K A;  3ZTV A;  5JPF A;  1XZW A;  3H67 A;  5EQV A;  3T1I A;  3RL3 A;  5B8I A;  3LLO A;  2AHD A;  1J7X A;  2R17 A;  1N6F A;  1TCO A;  1USH A;  4OR9 A;  5JJT A;  3GVK A;  2XMO A;  1FCF A;  1BUZ A;  1T6R A;  2IAE C;  4TUG A;  3ZXN A;  4G9J A;  1S95 A;  4XS5 A;  1OIE A;  3FGA C;  1N6D A;  3EGG A;  3IVE A;  3IB7 A;  4DT2 A;  4ZVZ A;  1S3N A;  2NYM C;  1AUZ A;  4I5N C;  3T6O A;  3RQZ A;  1H4Z A;  3PSO A;  1NNW A;  3RL4 A;  4F0Z A;  4H2F A;  3GHF A;  3JYF A;  1FC6 A;  2NYL C;  2QFR A;  1WAO 1;  3H63 A;  2KLN A;  2DXL A;  4I5L C;  3IH9 A;  3NY7 A;  1V73 A;  3K50 A;  1VC1 A;  3H69 A;  2Q8U A;  3GMF A;  3C5W C;  1IT6 A;  4H2I A;  1HO5 A;  1MF8 A;  4MP0 A;  4B2O A;  2O8G A;  3GK7 A;  3K7W C;  2Z72 A;  2GJU A;  1OI8 A;  4H1S A;  3RL5 A;  3C0K A;  4J6O A;  1QFC A;  4HYL A;  1FJM A;  2ZOA A;  1XM7 A;  2CWW A;  4H2B A;  4AEJ A;  4M0V A;  3HVQ A;  3LL8 A;  2OAS A;  3AGE A;  3GVL A;  3VSE A;  4ORC A;  4Q7F A;  3TGH A;  4L1C A;  2ZO9 B;  2WDD A;  2HYP A;  1HP1 A;  3DSC A;  3ICF A; 
#chains in the Genus database with same CATH homology
 2WDC A;  1II7 A;  1KBP A;  3E7A A;  4AE2 A;  4NZV A;  4UT3 B;  5F3W A;  3CK2 A;  4MOV A;  1JK7 A;  2NXF A;  4FBK A;  1UF3 A;  1FC9 A;  4O43 A;  2ZBM A;  4ORB A;  3H68 A;  2DXN A;  4KBP A;  4HD0 A;  4O5G A;  4YKE A;  3RL5 A;  2IE4 C;  4LTY A;  5INB A;  4WWL A;  3QFK A;  4DSY A;  2HY1 A;  4V0V A;  4ZX2 A;  4FBQ A;  3H66 A;  3C9F A;  3FLO A;  3DW8 C;  2QFP A;  5HPE A;  3MOG A;  1S70 A;  2Z06 A;  2HYO A;  5C1V A;  2BQ8 X;  2NPP C;  1S8E A;  2BDX A;  4FBW A;  4JA9 A;  3GVE A;  1UTE A;  3E0J A;  2BCD A;  4IYP C;  2A22 A;  3QG5 C;  1K32 A;  3DSD A;  2P6B A;  1HPU A;  2QJC A;  2USH A;  1SU1 A;  3N5U A;  1N6E A;  2WDF A;  3QFM A;  4H2G A;  3AV0 A;  1S3L A;  2DFJ A;  3EGH A;  3H64 A;  4DHL A;  2O8A A;  3AUZ A;  2Z1A A;  4KKZ A;  1M63 A;  2IE3 C;  3H62 B;  1W24 A;  4MOY A;  3H61 A;  4H1Y P;  2YEQ A;  3DJA A;  4JA7 A;  4IL1 A;  1QHW A;  3K7V C;  4V0X A;  1U32 A;  3QFO A;  1Z2W A;  4TUI A;  1OID A;  1WAR A;  2YVT A;  3KBP A;  1T70 A;  3E7B A;  3DOR A;  3ZU0 A;  5J28 A;  4V0W A;  4UT2 A;  5IOH A;  4FCX A;  3THN A;  1AUI A;  2JOG A;  2ZO9 B;  3THO B;  3P71 C;  4LU9 A;  4XPN A;  5GTU A;  2WDE A;  4L8K A;  1BPL A;  4JC0 A;  5DNY A;  3D03 A;  3IB8 A;  4LAC C;  2KKN A;  5JPE A;  4UWQ A;  3V4Y A;  2CV9 A;  3IVD A;  3H60 A;  1S3M A;  4GHN A;  4ORA A;  3DUP A;  1T71 A;  3QFN A;  1FC7 A;  2RRL A;  4O24 A;  1G5B A;  1Z2X A;  3PSN A;  4O4K A;  3ZTV A;  5JPF A;  1XZW A;  3H67 A;  5EQV A;  3T1I A;  3RL3 A;  5B8I A;  2AHD A;  1J7X A;  2R17 A;  1N6F A;  1TCO A;  1USH A;  4OR9 A;  5JJT A;  2XMO A;  1FCF A;  2IAE C;  4TUG A;  4G9J A;  1S95 A;  1OIE A;  3FGA C;  1N6D A;  3EGG A;  3IVE A;  3IB7 A;  4ZVZ A;  1S3N A;  2NYM C;  4I5N C;  3RQZ A;  3PSO A;  1NNW A;  3RL4 A;  4F0Z A;  4H2F A;  3GHF A;  3JYF A;  2NYL C;  2QFR A;  1WAO 1;  3H63 A;  2DXL A;  4I5L C;  1V73 A;  3H69 A;  4UT3 A;  3K50 A;  4DT2 A;  2Q8U A;  3GMF A;  3C5W C;  1IT6 A;  4H2I A;  1HO5 A;  1MF8 A;  4MP0 A;  4B2O A;  2O8G A;  3K7W C;  2Z72 A;  2GJU A;  1OI8 A;  4H1S A;  4J6O A;  1QFC A;  1FJM A;  2ZOA A;  1XM7 A;  4H2B A;  4AEJ A;  4M0V A;  3HVQ A;  3LL8 A;  4Q7F A;  4ORC A;  3TGH A;  4L1C A;  1FC6 A;  2WDD A;  2HYP A;  1HP1 A;  3DSC A;  3ICF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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