3D03A

1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
274
structure length
274
Chain Sequence
b'MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 83
structure length 274
sequence length 274
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3d03A02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3d03A01
2ZOAA 2DXLA 2ZO9B 2DXNA 3D03A
chains in the Genus database with same CATH superfamily
3ICFA 3K50A 3CK2A 3N5UA 2NPPC 4DMGA 3GVKA 4FCXA 1THNB 1G5BA 4JA7A 4G9JA 4I5NC 4LTYA 2AS0A 4KBPA 1XM7A 1KBPA 1V0EA 3LDFA 2USHA 3AUZA 2CV9A 4ORBA 3V4YA 1Z2WA 1T6RA 1II7A 4O43A 4DSYA 3H63A 4O5GA 1HF2A 1AUZA 4ZVZA 4DGFA 1UF3A 2NXFA 3LL8A 2CWWA 3GMFA 4HYLA 4FBKA 4I5LC 5IOHA 5DNYA 3AV0A 1U32A 3EGGA 4OR9A 4UT2A 4TUGA 4WWLA 4HIZA 3THOB 3RL4A 1N6EA 3E7BA 4M0VA 1JK7A 3IH8A 4F0ZA 3DSDA 3DUPA 3ZTBA 3EGHA 4O24A 2AHDA 1TILB 5INBA 4LU9A 4V0VA 3IH9A 3MGLA 3GHFA 1HO5A 3QG5C 3H61A 1V0FA 2ZO9B 3DJAA 3H69A 4V0WA 3FLOA 3EH7A 4HD0A 1N6DA 3PSNA 4UT3A 2HYPA 5F3WA 4H1YP 2P6BA 4AE2A 3T6OA 1FJMA 1OI8A 4L8KA 2GJUA 2WDCA 3IB7A 3P71C 2WDFA 2DXNA 3QDQA 1OIDA 2QJCA 1M63A 4ORAA 1S3MA 1S3LA 1T71A 3OIRA 1IT6A 4IL1A 3QFNA 3THNA 3ZTVA 3DORA 3QFMA 1N6FA 2BCDA 1H4YA 3H66A 4ORCA 5GTUA 4H2GA 4FBWA 2OASA 4ZX2A 3C9FA 1UTEA 5B8IA 1TCOA 5JJTA 1H4ZA 2ZOAA 4MP0A 3DW8C 4MOYA 5C1VA 1W24A 2Z72A 5EUZA 3MOGA 2Z06A 4JA9A 5JPEA 1J7XA 5HPEA 2Z1AA 2BDXA 3OIZA 3RQZA 2WDEA 2IAEC 3IB8A 3RL3A 4DHLA 1Z2XA 1K32A 1H4XA 3GVEA 3LLOA 1S95A 1V73A 2KKNA 2O8GA 2JOGA 3H67A 3D3UA 2KLNA 1SBOA 1TH8B 2B78A 1SU1A 2A22A 3K7VC 3GVJA 1WARA 2NYLC 1FC9A 4J6OA 3V8VA 1MF8A 3RL5A 5EZBA 2RRLA 2HYOA 3K7WC 2QFPA 3C5WC 4H2BA 5EUXA 4IYPC 3H68A 4L1CA 4MOVA 1QFCA 4DT2A 1HP1A 1T70A 1FCFA 2YVTA 4FBQA 1BPLA 4H2FA 2Q8UA 3D03A 4JC0A 3VSEA 3IF5A 3ZXNA 1NNWA 4LACC 3FGAC 3H62B 3ZU0A 2BQ8X 2DXLA 3NY7A 3DSCA 3AGDA 3HVQA 4NZVA 3T1IA 4V0XA 5JPFA 3F43A 3KBPA 1WXWA 1XZWA 2VY9A 1TIDB 2QFRA 3IVDA 1WXXA 4AEJA 3QFKA 4TUIA 2NYMC 1S70A 3TGHA 1AUIA 1HPUA 4XS5A 3AGEA 3C0KA 2IE3C 1OIEA 3IHAA 4QTPA 1WAO1 2XMOA 3H60A 2HY1A 3JYFA 5EUSA 3QFOA 3LKLA 1QHWA 1S8EA 2YEQA 4XPNA 3H64A 1USHA 4UWQA 3PSOA 2KA5A 3E0JA 3GVLA 4Q7FA 4B2OA 2ZBMA 4UT3B 3IVEA 2DFJA 1VC1A 4DGHA 5EQVA 4O4KA 4YKEA 3JU4A 4KKZA 2R17A 4GHNA 5J28A 3GK7A 2IE4C 5EUWA 1BUZA 1FC6A 2WDDA 1S3NA 3E7AA 3IHBA 3V97A 4H1SA 2O8AA 1FC7A 5EUUA 4H2IA
chains in the Genus database with same CATH topology
3ICFA 3K50A 3CK2A 3N5UA 2NPPC 4FCXA 4JA7A 1G5BA 4G9JA 4I5NC 4LTYA 4KBPA 1XM7A 1KBPA 2USHA 3AUZA 4ORBA 2CV9A 3V4YA 1Z2WA 1II7A 4O43A 4DSYA 3H63A 4O5GA 4ZVZA 1UF3A 2NXFA 3LL8A 3GMFA 4FBKA 4I5LC 5IOHA 5DNYA 4TUGA 3AV0A 1U32A 3EGGA 4OR9A 4UT2A 4WWLA 3THOB 3RL4A 1N6EA 3E7BA 4M0VA 1JK7A 4F0ZA 3DSDA 3DUPA 3EGHA 4O24A 2AHDA 5INBA 4LU9A 4V0VA 3GHFA 1HO5A 3QG5C 3H61A 2ZO9B 3DJAA 3H69A 3FLOA 4HD0A 1N6DA 3PSNA 4UT3A 2HYPA 5F3WA 4H1YP 2P6BA 4AE2A 1FJMA 2GJUA 1OI8A 4L8KA 2WDCA 3IB7A 3P71C 2WDFA 2DXNA 1OIDA 2QJCA 1M63A 4ORAA 1S3MA 1S3LA 1T71A 1IT6A 4IL1A 3QFNA 3THNA 3DORA 3QFMA 1N6FA 2BCDA 3H66A 4ORCA 5GTUA 4H2GA 4FBWA 4ZX2A 3C9FA 1UTEA 5B8IA 1TCOA 5JJTA 2ZOAA 4MP0A 3DW8C 4MOYA 1W24A 2Z72A 3MOGA 2Z06A 4JA9A 5JPEA 1J7XA 5HPEA 2Z1AA 2BDXA 3RQZA 2WDEA 2IAEC 3IB8A 3RL3A 4DHLA 1Z2XA 1K32A 3GVEA 1V73A 1S95A 2KKNA 2O8GA 3H67A 2JOGA 4V0WA 4YKEA 5C1VA 2A22A 1SU1A 3K7VC 1WARA 2NYLC 1FC9A 4J6OA 3RL5A 1MF8A 2RRLA 2HYOA 3K7WC 2QFPA 3C5WC 4H2BA 4IYPC 3H68A 4L1CA 4MOVA 1QFCA 4DT2A 1HP1A 1T70A 1FCFA 2YVTA 4FBQA 1BPLA 4H2FA 2Q8UA 3D03A 4JC0A 1NNWA 4LACC 3FGAC 3H62B 3ZU0A 2BQ8X 2DXLA 3DSCA 3HVQA 3T1IA 4NZVA 4V0XA 5JPFA 3KBPA 1XZWA 2QFRA 3QFKA 3IVDA 4AEJA 4TUIA 2NYMC 1S70A 3TGHA 1AUIA 1HPUA 2XMOA 2IE3C 1OIEA 1WAO1 3H60A 3JYFA 4H1SA 3ZTVA 2HY1A 3QFOA 1QHWA 1S8EA 2YEQA 4XPNA 3H64A 1USHA 4UWQA 3PSOA 3E0JA 4B2OA 4Q7FA 2ZBMA 4UT3B 3IVEA 2DFJA 5EQVA 4O4KA 4KKZA 2R17A 4GHNA 5J28A 2IE4C 1FC6A 2WDDA 1S3NA 3E7AA 2O8AA 1FC7A 4H2IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  2DXL A;  2ZO9 B;  2DXN A;  3D03 A; 
#chains in the Genus database with same CATH topology
 3ICF A;  3K50 A;  3CK2 A;  3N5U A;  2NPP C;  4DMG A;  3GVK A;  4FCX A;  1THN B;  1G5B A;  4JA7 A;  4G9J A;  4I5N C;  4LTY A;  2AS0 A;  4KBP A;  1XM7 A;  1KBP A;  1V0E A;  3LDF A;  2USH A;  3AUZ A;  2CV9 A;  4ORB A;  3V4Y A;  1Z2W A;  1T6R A;  1II7 A;  4O43 A;  4DSY A;  3H63 A;  4O5G A;  1HF2 A;  1AUZ A;  4ZVZ A;  4DGF A;  1UF3 A;  2NXF A;  3LL8 A;  2CWW A;  3GMF A;  4HYL A;  4FBK A;  4I5L C;  5IOH A;  5DNY A;  3AV0 A;  1U32 A;  3EGG A;  4OR9 A;  4UT2 A;  4TUG A;  4WWL A;  4HIZ A;  3THO B;  3RL4 A;  1N6E A;  3E7B A;  4M0V A;  1JK7 A;  3IH8 A;  4F0Z A;  3DSD A;  3DUP A;  3ZTB A;  3EGH A;  4O24 A;  2AHD A;  1TIL B;  5INB A;  4LU9 A;  4V0V A;  3IH9 A;  3MGL A;  3GHF A;  1HO5 A;  3QG5 C;  3H61 A;  1V0F A;  2ZO9 B;  3DJA A;  3H69 A;  4V0W A;  3FLO A;  3EH7 A;  4HD0 A;  1N6D A;  3PSN A;  4UT3 A;  2HYP A;  5F3W A;  4H1Y P;  2P6B A;  4AE2 A;  3T6O A;  1FJM A;  1OI8 A;  4L8K A;  2GJU A;  2WDC A;  3IB7 A;  3P71 C;  2WDF A;  2DXN A;  3QDQ A;  1OID A;  2QJC A;  1M63 A;  4ORA A;  1S3M A;  1S3L A;  1T71 A;  3OIR A;  1IT6 A;  4IL1 A;  3QFN A;  3THN A;  3ZTV A;  3DOR A;  3QFM A;  1N6F A;  2BCD A;  1H4Y A;  3H66 A;  4ORC A;  5GTU A;  4H2G A;  4FBW A;  2OAS A;  4ZX2 A;  3C9F A;  1UTE A;  5B8I A;  1TCO A;  5JJT A;  1H4Z A;  2ZOA A;  4MP0 A;  3DW8 C;  4MOY A;  5C1V A;  1W24 A;  2Z72 A;  5EUZ A;  3MOG A;  2Z06 A;  4JA9 A;  5JPE A;  1J7X A;  5HPE A;  2Z1A A;  2BDX A;  3OIZ A;  3RQZ A;  2WDE A;  2IAE C;  3IB8 A;  3RL3 A;  4DHL A;  1Z2X A;  1K32 A;  1H4X A;  3GVE A;  3LLO A;  1S95 A;  1V73 A;  2KKN A;  2O8G A;  2JOG A;  3H67 A;  3D3U A;  2KLN A;  1SBO A;  1TH8 B;  2B78 A;  1SU1 A;  2A22 A;  3K7V C;  3GVJ A;  1WAR A;  2NYL C;  1FC9 A;  4J6O A;  3V8V A;  1MF8 A;  3RL5 A;  5EZB A;  2RRL A;  2HYO A;  3K7W C;  2QFP A;  3C5W C;  4H2B A;  5EUX A;  4IYP C;  3H68 A;  4L1C A;  4MOV A;  1QFC A;  4DT2 A;  1HP1 A;  1T70 A;  1FCF A;  2YVT A;  4FBQ A;  1BPL A;  4H2F A;  2Q8U A;  3D03 A;  4JC0 A;  3VSE A;  3IF5 A;  3ZXN A;  1NNW A;  4LAC C;  3FGA C;  3H62 B;  3ZU0 A;  2BQ8 X;  2DXL A;  3NY7 A;  3DSC A;  3AGD A;  3HVQ A;  4NZV A;  3T1I A;  4V0X A;  5JPF A;  3F43 A;  3KBP A;  1WXW A;  1XZW A;  2VY9 A;  1TID B;  2QFR A;  3IVD A;  1WXX A;  4AEJ A;  3QFK A;  4TUI A;  2NYM C;  1S70 A;  3TGH A;  1AUI A;  1HPU A;  4XS5 A;  3AGE A;  3C0K A;  2IE3 C;  1OIE A;  3IHA A;  4QTP A;  1WAO 1;  2XMO A;  3H60 A;  2HY1 A;  3JYF A;  5EUS A;  3QFO A;  3LKL A;  1QHW A;  1S8E A;  2YEQ A;  4XPN A;  3H64 A;  1USH A;  4UWQ A;  3PSO A;  2KA5 A;  3E0J A;  3GVL A;  4Q7F A;  4B2O A;  2ZBM A;  4UT3 B;  3IVE A;  2DFJ A;  1VC1 A;  4DGH A;  5EQV A;  4O4K A;  4YKE A;  3JU4 A;  4KKZ A;  2R17 A;  4GHN A;  5J28 A;  3GK7 A;  2IE4 C;  5EUW A;  1BUZ A;  1FC6 A;  2WDD A;  1S3N A;  3E7A A;  3IHB A;  3V97 A;  4H1S A;  2O8A A;  1FC7 A;  5EUU A;  4H2I A; 
#chains in the Genus database with same CATH homology
 3ICF A;  3K50 A;  3CK2 A;  3N5U A;  2NPP C;  4FCX A;  4JA7 A;  1G5B A;  4G9J A;  4I5N C;  4LTY A;  4KBP A;  1XM7 A;  1KBP A;  2USH A;  3AUZ A;  4ORB A;  2CV9 A;  3V4Y A;  1Z2W A;  1II7 A;  4O43 A;  4DSY A;  3H63 A;  4O5G A;  4ZVZ A;  1UF3 A;  2NXF A;  3LL8 A;  3GMF A;  4FBK A;  4I5L C;  5IOH A;  5DNY A;  4TUG A;  3AV0 A;  1U32 A;  3EGG A;  4OR9 A;  4UT2 A;  4WWL A;  3THO B;  3RL4 A;  1N6E A;  3E7B A;  4M0V A;  1JK7 A;  4F0Z A;  3DSD A;  3DUP A;  3EGH A;  4O24 A;  2AHD A;  5INB A;  4LU9 A;  4V0V A;  3GHF A;  1HO5 A;  3QG5 C;  3H61 A;  2ZO9 B;  3DJA A;  3H69 A;  3FLO A;  4HD0 A;  1N6D A;  3PSN A;  4UT3 A;  2HYP A;  5F3W A;  4H1Y P;  2P6B A;  4AE2 A;  1FJM A;  2GJU A;  1OI8 A;  4L8K A;  2WDC A;  3IB7 A;  3P71 C;  2WDF A;  2DXN A;  1OID A;  2QJC A;  1M63 A;  4ORA A;  1S3M A;  1S3L A;  1T71 A;  1IT6 A;  4IL1 A;  3QFN A;  3THN A;  3DOR A;  3QFM A;  1N6F A;  2BCD A;  3H66 A;  4ORC A;  5GTU A;  4H2G A;  4FBW A;  4ZX2 A;  3C9F A;  1UTE A;  5B8I A;  1TCO A;  5JJT A;  2ZOA A;  4MP0 A;  3DW8 C;  4MOY A;  1W24 A;  2Z72 A;  3MOG A;  2Z06 A;  4JA9 A;  5JPE A;  1J7X A;  5HPE A;  2Z1A A;  2BDX A;  3RQZ A;  2WDE A;  2IAE C;  3IB8 A;  3RL3 A;  4DHL A;  1Z2X A;  1K32 A;  3GVE A;  1V73 A;  1S95 A;  2KKN A;  2O8G A;  3H67 A;  2JOG A;  4V0W A;  4YKE A;  5C1V A;  2A22 A;  1SU1 A;  3K7V C;  1WAR A;  2NYL C;  1FC9 A;  4J6O A;  3RL5 A;  1MF8 A;  2RRL A;  2HYO A;  3K7W C;  2QFP A;  3C5W C;  4H2B A;  4IYP C;  3H68 A;  4L1C A;  4MOV A;  1QFC A;  4DT2 A;  1HP1 A;  1T70 A;  1FCF A;  2YVT A;  4FBQ A;  1BPL A;  4H2F A;  2Q8U A;  3D03 A;  4JC0 A;  1NNW A;  4LAC C;  3FGA C;  3H62 B;  3ZU0 A;  2BQ8 X;  2DXL A;  3DSC A;  3HVQ A;  3T1I A;  4NZV A;  4V0X A;  5JPF A;  3KBP A;  1XZW A;  2QFR A;  3QFK A;  3IVD A;  4AEJ A;  4TUI A;  2NYM C;  1S70 A;  3TGH A;  1AUI A;  1HPU A;  2XMO A;  2IE3 C;  1OIE A;  1WAO 1;  3H60 A;  3JYF A;  4H1S A;  3ZTV A;  2HY1 A;  3QFO A;  1QHW A;  1S8E A;  2YEQ A;  4XPN A;  3H64 A;  1USH A;  4UWQ A;  3PSO A;  3E0J A;  4B2O A;  4Q7F A;  2ZBM A;  4UT3 B;  3IVE A;  2DFJ A;  5EQV A;  4O4K A;  4KKZ A;  2R17 A;  4GHN A;  5J28 A;  2IE4 C;  1FC6 A;  2WDD A;  1S3N A;  3E7A A;  2O8A A;  1FC7 A;  4H2I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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