3D03A

1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
274
structure length
274
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Enterobacter aerogenes
publication title Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb
molecule keywords Phosphohydrolase
total genus 83
structure length 274
sequence length 274
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3d03A02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3d03A01
2ZOAA 2DXLA 2DXNA 2ZO9B 3D03A
chains in the Genus database with same CATH superfamily
3HVQA 3GVLA 2HYPA 3QG5C 3GVJA 3ZTVA 3OIZA 2IE3C 1TIDB 2Z1AA 3K7VC 3QFMA 1TCOA 3QFNA 4O4KA 5INBA 3JYFA 3AGEA 5EUUA 2R17A 1TH8B 4V0WA 1H4ZA 4FBWA 4DMGA 3ICFA 4MP0A 1N6FA 2KKNA 3TGHA 3K50A 4FBKA 2IE4C 4QTPA 1AUIA 4MOVA 1S3LA 2ZBMA 3IB7A 2DFJA 5EZBA 3FGAC 4FBQA 5HPEA 2GJUA 2CV9A 2XMOA 4AEJA 1U32A 3PSNA 3DSDA 1IT6A 5C1VA 4OR9A 1G5BA 2O8AA 4GHNA 1UTEA 1N6DA 2BCDA 5DNYA 2USHA 5JPFA 1T6RA 2ZO9B 1II7A 2HYOA 1KBPA 1OIDA 3THOB 2AHDA 1Z2WA 3H63A 4J6OA 1SBOA 3AGDA 4ORAA 3LLOA 1AUZA 4KKZA 4LTYA 3H62B 1XM7A 4TUGA 3IB8A 3MOGA 5JPEA 4TUIA 2OASA 1V0EA 4HIZA 3E7AA 4XS5A 3KBPA 2O8GA 1J7XA 1HPUA 1S95A 1JK7A 1H4YA 3AUZA 3H60A 4ORBA 1Z2XA 3IF5A 1NNWA 3C0KA 4DGHA 5IOHA 1MF8A 4V0VA 4B2OA 2P6BA 3IVDA 3NY7A 1T71A 1H4XA 2DXNA 3GMFA 4O43A 4XPNA 4UWQA 3GHFA 5EUWA 1HF2A 2QFRA 4L8KA 3ZU0A 5B8IA 3IHAA 2YVTA 3LKLA 1WXXA 4DGFA 1THNB 3D3UA 1FC6A 2DXLA 2WDCA 3IVEA 2QFPA 4DSYA 3K7WC 4ZX2A 3T1IA 4V0XA 3D03A 4HYLA 3GVEA 3IH8A 3DUPA 1BUZA 1SU1A 3C9FA 3FLOA 3F43A 4M0VA 2HY1A 2NYLC 4H1YP 2CWWA 5EUZA 4LACC 4DT2A 3EGGA 4IL1A 4ORCA 2A22A 3V97A 4IYPC 1UF3A 1WARA 1FC9A 4UT3A 4FCXA 1FCFA 3IH9A 4AE2A 1QHWA 3RL3A 2KA5A 4H1SA 2YEQA 2AS0A 3GVKA 3DJAA 3H67A 3H61A 1USHA 3V8VA 3H69A 3VSEA 3LL8A 4H2IA 4O5GA 4ZVZA 3MGLA 2BQ8X 5J28A 1FC7A 4H2GA 3QFKA 5EQVA 1V73A 1S3MA 2BDXA 2RRLA 5EUSA 4MOYA 4L1CA 5JJTA 3EH7A 1QFCA 3OIRA 3ZXNA 4WWLA 2NPPC 3H68A 1V0FA 3E7BA 3E0JA 3QFOA 1FJMA 4H2BA 4HD0A 1OIEA 2IAEC 4UT3B 4I5NC 2WDEA 3JU4A 2B78A 2NXFA 4JC0A 1VC1A 4JA9A 2ZOAA 3RQZA 3RL4A 4JA7A 2WDDA 2Z06A 3EGHA 4LU9A 3LDFA 3T6OA 1HP1A 4O24A 1BPLA 1HO5A 3GK7A 3C5WC 1WXWA 5F3WA 3H66A 3P71C 3CK2A 2NYMC 1N6EA 1K32A 3QDQA 3ZTBA 4G9JA 4H2FA 2Q8UA 4Q7FA 3DORA 5EUXA 3DW8C 1OI8A 3N5UA 4NZVA 3THNA 3AV0A 2QJCA 3IHBA 1TILB 2JOGA 3V4YA 5GTUA 4UT2A 4DHLA 2KLNA 3DSCA 1T70A 1WAO1 4KBPA 1S8EA 3H64A 2Z72A 4I5LC 3RL5A 1M63A 2VY9A 3PSOA 4F0ZA 4YKEA 1W24A 1XZWA 1S3NA 1S70A 2WDFA
chains in the Genus database with same CATH topology
3HVQA 2HYPA 3QG5C 3ZTVA 2IE3C 2Z1AA 3K7VC 3QFMA 3QFNA 1TCOA 4O4KA 3JYFA 2R17A 4V0WA 4FBWA 3ICFA 4MP0A 1N6FA 2KKNA 3TGHA 3K50A 4FBKA 2IE4C 4MOVA 1AUIA 1S3LA 2ZBMA 3IB7A 2DFJA 3FGAC 4FBQA 5HPEA 2GJUA 2CV9A 2XMOA 4AEJA 1U32A 3PSNA 3DSDA 1IT6A 5C1VA 4OR9A 1G5BA 2O8AA 2BCDA 4GHNA 1N6DA 1UTEA 5DNYA 2USHA 5JPFA 1II7A 2ZO9B 2HYOA 1KBPA 1OIDA 3THOB 2AHDA 1Z2WA 3H63A 4J6OA 4ORAA 4KKZA 4LTYA 3H62B 1XM7A 4TUGA 3IB8A 3MOGA 5JPEA 4TUIA 3E7AA 3KBPA 2O8GA 1J7XA 1HPUA 1S95A 1JK7A 3AUZA 3H60A 4ORBA 1Z2XA 1NNWA 5IOHA 1MF8A 4V0VA 4B2OA 2P6BA 3IVDA 1T71A 4O43A 2DXNA 4XPNA 3GMFA 4UWQA 3GHFA 2QFRA 5B8IA 4L8KA 3ZU0A 2YVTA 1FC6A 2DXLA 2WDCA 3IVEA 2QFPA 4DSYA 3K7WC 4ZX2A 3T1IA 4V0XA 3D03A 3GVEA 4JA7A 4UT3B 3DUPA 3FLOA 1SU1A 3C9FA 4M0VA 2HY1A 2NYLC 4H1YP 4LACC 4DT2A 3EGGA 4IL1A 4ORCA 2A22A 4IYPC 1UF3A 1WARA 1FC9A 4UT3A 4FCXA 1FCFA 4AE2A 1QHWA 3RL3A 4H1SA 2YEQA 4I5LC 3DJAA 3H67A 3H61A 1USHA 3H69A 4ZVZA 3LL8A 4H2IA 4O5GA 2BQ8X 5J28A 1FC7A 4H2GA 3QFKA 5EQVA 1V73A 1S3MA 2BDXA 2RRLA 4MOYA 4L1CA 5JJTA 1QFCA 4WWLA 2NPPC 3H68A 3QFOA 3E7BA 3E0JA 4H2BA 1FJMA 4HD0A 1OIEA 2IAEC 4I5NC 2WDEA 4JA9A 2NXFA 4JC0A 2ZOAA 3RQZA 3RL4A 2WDDA 2Z06A 3EGHA 4LU9A 1HP1A 4O24A 1BPLA 1HO5A 3C5WC 5F3WA 3H66A 3P71C 3CK2A 2NYMC 1N6EA 1K32A 4G9JA 4Q7FA 5INBA 4H2FA 2Q8UA 3DORA 4NZVA 3DW8C 1OI8A 3N5UA 3THNA 3AV0A 2QJCA 3V4YA 2JOGA 4DHLA 5GTUA 4UT2A 3DSCA 1T70A 1WAO1 4KBPA 1S8EA 3H64A 2Z72A 3RL5A 1M63A 3PSOA 4F0ZA 4YKEA 1W24A 1XZWA 1S3NA 1S70A 2WDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  2DXL A;  2DXN A;  2ZO9 B;  3D03 A; 
#chains in the Genus database with same CATH topology
 3HVQ A;  3GVL A;  2HYP A;  3QG5 C;  3GVJ A;  3ZTV A;  3OIZ A;  2IE3 C;  1TID B;  2Z1A A;  3K7V C;  3QFM A;  1TCO A;  3QFN A;  4O4K A;  5INB A;  3JYF A;  3AGE A;  5EUU A;  2R17 A;  1TH8 B;  4V0W A;  1H4Z A;  4FBW A;  4DMG A;  3ICF A;  4MP0 A;  1N6F A;  2KKN A;  3TGH A;  3K50 A;  4FBK A;  2IE4 C;  4QTP A;  1AUI A;  4MOV A;  1S3L A;  2ZBM A;  3IB7 A;  2DFJ A;  5EZB A;  3FGA C;  4FBQ A;  5HPE A;  2GJU A;  2CV9 A;  2XMO A;  4AEJ A;  1U32 A;  3PSN A;  3DSD A;  1IT6 A;  5C1V A;  4OR9 A;  1G5B A;  2O8A A;  4GHN A;  1UTE A;  1N6D A;  2BCD A;  5DNY A;  2USH A;  5JPF A;  1T6R A;  2ZO9 B;  1II7 A;  2HYO A;  1KBP A;  1OID A;  3THO B;  2AHD A;  1Z2W A;  3H63 A;  4J6O A;  1SBO A;  3AGD A;  4ORA A;  3LLO A;  1AUZ A;  4KKZ A;  4LTY A;  3H62 B;  1XM7 A;  4TUG A;  3IB8 A;  3MOG A;  5JPE A;  4TUI A;  2OAS A;  1V0E A;  4HIZ A;  3E7A A;  4XS5 A;  3KBP A;  2O8G A;  1J7X A;  1HPU A;  1S95 A;  1JK7 A;  1H4Y A;  3AUZ A;  3H60 A;  4ORB A;  1Z2X A;  3IF5 A;  1NNW A;  3C0K A;  4DGH A;  5IOH A;  1MF8 A;  4V0V A;  4B2O A;  2P6B A;  3IVD A;  3NY7 A;  1T71 A;  1H4X A;  2DXN A;  3GMF A;  4O43 A;  4XPN A;  4UWQ A;  3GHF A;  5EUW A;  1HF2 A;  2QFR A;  4L8K A;  3ZU0 A;  5B8I A;  3IHA A;  2YVT A;  3LKL A;  1WXX A;  4DGF A;  1THN B;  3D3U A;  1FC6 A;  2DXL A;  2WDC A;  3IVE A;  2QFP A;  4DSY A;  3K7W C;  4ZX2 A;  3T1I A;  4V0X A;  3D03 A;  4HYL A;  3GVE A;  3IH8 A;  3DUP A;  1BUZ A;  1SU1 A;  3C9F A;  3FLO A;  3F43 A;  4M0V A;  2HY1 A;  2NYL C;  4H1Y P;  2CWW A;  5EUZ A;  4LAC C;  4DT2 A;  3EGG A;  4IL1 A;  4ORC A;  2A22 A;  3V97 A;  4IYP C;  1UF3 A;  1WAR A;  1FC9 A;  4UT3 A;  4FCX A;  1FCF A;  3IH9 A;  4AE2 A;  1QHW A;  3RL3 A;  2KA5 A;  4H1S A;  2YEQ A;  2AS0 A;  3GVK A;  3DJA A;  3H67 A;  3H61 A;  1USH A;  3V8V A;  3H69 A;  3VSE A;  3LL8 A;  4H2I A;  4O5G A;  4ZVZ A;  3MGL A;  2BQ8 X;  5J28 A;  1FC7 A;  4H2G A;  3QFK A;  5EQV A;  1V73 A;  1S3M A;  2BDX A;  2RRL A;  5EUS A;  4MOY A;  4L1C A;  5JJT A;  3EH7 A;  1QFC A;  3OIR A;  3ZXN A;  4WWL A;  2NPP C;  3H68 A;  1V0F A;  3E7B A;  3E0J A;  3QFO A;  1FJM A;  4H2B A;  4HD0 A;  1OIE A;  2IAE C;  4UT3 B;  4I5N C;  2WDE A;  3JU4 A;  2B78 A;  2NXF A;  4JC0 A;  1VC1 A;  4JA9 A;  2ZOA A;  3RQZ A;  3RL4 A;  4JA7 A;  2WDD A;  2Z06 A;  3EGH A;  4LU9 A;  3LDF A;  3T6O A;  1HP1 A;  4O24 A;  1BPL A;  1HO5 A;  3GK7 A;  3C5W C;  1WXW A;  5F3W A;  3H66 A;  3P71 C;  3CK2 A;  2NYM C;  1N6E A;  1K32 A;  3QDQ A;  3ZTB A;  4G9J A;  4H2F A;  2Q8U A;  4Q7F A;  3DOR A;  5EUX A;  3DW8 C;  1OI8 A;  3N5U A;  4NZV A;  3THN A;  3AV0 A;  2QJC A;  3IHB A;  1TIL B;  2JOG A;  3V4Y A;  5GTU A;  4UT2 A;  4DHL A;  2KLN A;  3DSC A;  1T70 A;  1WAO 1;  4KBP A;  1S8E A;  3H64 A;  2Z72 A;  4I5L C;  3RL5 A;  1M63 A;  2VY9 A;  3PSO A;  4F0Z A;  4YKE A;  1W24 A;  1XZW A;  1S3N A;  1S70 A;  2WDF A; 
#chains in the Genus database with same CATH homology
 3HVQ A;  2HYP A;  3QG5 C;  3ZTV A;  2IE3 C;  2Z1A A;  3K7V C;  3QFM A;  3QFN A;  1TCO A;  4O4K A;  3JYF A;  2R17 A;  4V0W A;  4FBW A;  3ICF A;  4MP0 A;  1N6F A;  2KKN A;  3TGH A;  3K50 A;  4FBK A;  2IE4 C;  4MOV A;  1AUI A;  1S3L A;  2ZBM A;  3IB7 A;  2DFJ A;  3FGA C;  4FBQ A;  5HPE A;  2GJU A;  2CV9 A;  2XMO A;  4AEJ A;  1U32 A;  3PSN A;  3DSD A;  1IT6 A;  5C1V A;  4OR9 A;  1G5B A;  2O8A A;  2BCD A;  4GHN A;  1N6D A;  1UTE A;  5DNY A;  2USH A;  5JPF A;  1II7 A;  2ZO9 B;  2HYO A;  1KBP A;  1OID A;  3THO B;  2AHD A;  1Z2W A;  3H63 A;  4J6O A;  4ORA A;  4KKZ A;  4LTY A;  3H62 B;  1XM7 A;  4TUG A;  3IB8 A;  3MOG A;  5JPE A;  4TUI A;  3E7A A;  3KBP A;  2O8G A;  1J7X A;  1HPU A;  1S95 A;  1JK7 A;  3AUZ A;  3H60 A;  4ORB A;  1Z2X A;  1NNW A;  5IOH A;  1MF8 A;  4V0V A;  4B2O A;  2P6B A;  3IVD A;  1T71 A;  4O43 A;  2DXN A;  4XPN A;  3GMF A;  4UWQ A;  3GHF A;  2QFR A;  5B8I A;  4L8K A;  3ZU0 A;  2YVT A;  1FC6 A;  2DXL A;  2WDC A;  3IVE A;  2QFP A;  4DSY A;  3K7W C;  4ZX2 A;  3T1I A;  4V0X A;  3D03 A;  3GVE A;  4JA7 A;  4UT3 B;  3DUP A;  3FLO A;  1SU1 A;  3C9F A;  4M0V A;  2HY1 A;  2NYL C;  4H1Y P;  4LAC C;  4DT2 A;  3EGG A;  4IL1 A;  4ORC A;  2A22 A;  4IYP C;  1UF3 A;  1WAR A;  1FC9 A;  4UT3 A;  4FCX A;  1FCF A;  4AE2 A;  1QHW A;  3RL3 A;  4H1S A;  2YEQ A;  4I5L C;  3DJA A;  3H67 A;  3H61 A;  1USH A;  3H69 A;  4ZVZ A;  3LL8 A;  4H2I A;  4O5G A;  2BQ8 X;  5J28 A;  1FC7 A;  4H2G A;  3QFK A;  5EQV A;  1V73 A;  1S3M A;  2BDX A;  2RRL A;  4MOY A;  4L1C A;  5JJT A;  1QFC A;  4WWL A;  2NPP C;  3H68 A;  3QFO A;  3E7B A;  3E0J A;  4H2B A;  1FJM A;  4HD0 A;  1OIE A;  2IAE C;  4I5N C;  2WDE A;  4JA9 A;  2NXF A;  4JC0 A;  2ZOA A;  3RQZ A;  3RL4 A;  2WDD A;  2Z06 A;  3EGH A;  4LU9 A;  1HP1 A;  4O24 A;  1BPL A;  1HO5 A;  3C5W C;  5F3W A;  3H66 A;  3P71 C;  3CK2 A;  2NYM C;  1N6E A;  1K32 A;  4G9J A;  4Q7F A;  5INB A;  4H2F A;  2Q8U A;  3DOR A;  4NZV A;  3DW8 C;  1OI8 A;  3N5U A;  3THN A;  3AV0 A;  2QJC A;  3V4Y A;  2JOG A;  4DHL A;  5GTU A;  4UT2 A;  3DSC A;  1T70 A;  1WAO 1;  4KBP A;  1S8E A;  3H64 A;  2Z72 A;  3RL5 A;  1M63 A;  3PSO A;  4F0Z A;  4YKE A;  1W24 A;  1XZW A;  1S3N A;  1S70 A;  2WDF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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