3D03A

1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
274
structure length
274
Chain Sequence
b'MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb
molecule keywords Phosphohydrolase
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 83
structure length 274
sequence length 274
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3d03A02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3d03A01
2ZOAA 3D03A 2DXLA 2DXNA 2ZO9B
chains in the Genus database with same CATH superfamily
3LKLA 4JA7A 4MOVA 2HY1A 3CK2A 1W24A 3DORA 4J6OA 4FBWA 4ZX2A 3DSDA 5EUXA 2BQ8X 4H2BA 1NNWA 1AUZA 4O24A 1BUZA 4V0VA 3ZU0A 4F0ZA 4UT3A 4TUGA 4NZVA 3H66A 2ZOAA 2JOGA 2RRLA 3QDQA 2Q8UA 3IB7A 2DXLA 4XS5A 3H62B 3V4YA 5INBA 4L1CA 3QFOA 3DUPA 3OIZA 4QTPA 4ZVZA 3H67A 4FCXA 1S3MA 1XZWA 3PSOA 5EUUA 4H1SA 1AUIA 1HO5A 3QFMA 4IYPC 4KKZA 5IOHA 1BPLA 2WDDA 3E0JA 3IH8A 4KBPA 1N6EA 2NYLC 3GVEA 4I5NC 1V0FA 3GHFA 5F3WA 3LLOA 2HYOA 4B2OA 3AV0A 1WXXA 3IHAA 5EUWA 2ZBMA 3QG5C 3MGLA 2DFJA 3K7VC 2CV9A 1TIDB 4UT3B 4WWLA 3E7AA 5J28A 1UTEA 1Z2XA 2KLNA 3IF5A 3V97A 2HYPA 4LACC 1IT6A 2YVTA 4XPNA 2DXNA 3ZTBA 2AHDA 3NY7A 3RQZA 4DT2A 4AEJA 2QFRA 1FC6A 4H2IA 3E7BA 4ORAA 1FCFA 2OASA 4HYLA 3ZXNA 1HP1A 1HF2A 2WDEA 5JPEA 3H63A 4TUIA 3HVQA 3OIRA 5EUSA 2IAEC 4LTYA 4MOYA 1SU1A 5GTUA 2P6BA 2NXFA 3JU4A 1S3NA 3AGDA 1TCOA 1WXWA 4DMGA 1XM7A 1SBOA 1WARA 1G5BA 2Z06A 5C1VA 3IB8A 1THNB 1Z2WA 1OI8A 4H2FA 1OIDA 1UF3A 3H60A 3PSNA 1USHA 3RL4A 3LDFA 3THOB 3F43A 4G9JA 3ICFA 3VSEA 4DGHA 3RL3A 1OIEA 5B8IA 1FC9A 3GVJA 4HD0A 1K32A 2B78A 3T6OA 1WAO1 3AUZA 3D3UA 1KBPA 2O8AA 2R17A 4O5GA 4H2GA 4GHNA 1H4XA 1QFCA 3JYFA 3N5UA 5JJTA 1T70A 2Z72A 2CWWA 3DSCA 2KKNA 2QFPA 3GVKA 3GK7A 3IHBA 4FBQA 4ORBA 3IH9A 3D03A 3GVLA 4DSYA 1V73A 2XMOA 2GJUA 1II7A 2IE3C 4LU9A 3RL5A 5EZBA 3TGHA 2YEQA 2NPPC 4HIZA 3V8VA 2NYMC 3ZTVA 2ZO9B 3FLOA 3DJAA 4JA9A 1H4YA 4DGFA 1J7XA 4V0XA 1H4ZA 4JC0A 4IL1A 4UWQA 3K50A 3K7WC 3H69A 3H61A 3EGHA 3QFKA 3GMFA 3THNA 4AE2A 2BCDA 4ORCA 2USHA 3KBPA 1V0EA 1FJMA 3QFNA 4H1YP 2Z1AA 3H64A 3C9FA 2IE4C 1QHWA 3FGAC 1T6RA 1TILB 2O8GA 2WDCA 4MP0A 2BDXA 1M63A 3C0KA 4V0WA 5EQVA 1S3LA 2WDFA 4UT2A 5DNYA 1S95A 3DW8C 4Q7FA 5HPEA 2VY9A 1N6DA 1TH8B 1VC1A 1JK7A 4OR9A 2KA5A 3T1IA 5EUZA 2QJCA 1S70A 3LL8A 4YKEA 1FC7A 1MF8A 3C5WC 3EGGA 4O43A 4DHLA 3IVEA 4O4KA 3IVDA 1S8EA 3AGEA 4L8KA 1T71A 1U32A 4I5LC 2AS0A 2A22A 4M0VA 5JPFA 3H68A 1N6FA 3P71C 3MOGA 1HPUA 4FBKA 3EH7A
chains in the Genus database with same CATH topology
4JA7A 4MOVA 2HY1A 3CK2A 1W24A 3DORA 4J6OA 4FBWA 4ZX2A 3DSDA 2BQ8X 4H2BA 4O24A 1NNWA 4V0VA 3ZU0A 4F0ZA 4UT3A 4TUGA 4NZVA 3H66A 2ZOAA 2JOGA 2RRLA 2Q8UA 3IB7A 2DXLA 3H62B 3V4YA 5INBA 4L1CA 3QFOA 3DUPA 4ZVZA 3H67A 4FCXA 1S3MA 1XZWA 3PSOA 4H1SA 4IYPC 1AUIA 1HO5A 3QFMA 5IOHA 4KKZA 1BPLA 2WDDA 3E0JA 4KBPA 1N6EA 2NYLC 3GVEA 4I5NC 3GHFA 5F3WA 4B2OA 2HYOA 3AV0A 2ZBMA 3QG5C 2DFJA 3K7VC 2CV9A 4UT3B 4WWLA 3E7AA 5J28A 1UTEA 1Z2XA 4LACC 2HYPA 1IT6A 2YVTA 4XPNA 2DXNA 2AHDA 3RQZA 4DT2A 4AEJA 2QFRA 1FC6A 4H2IA 3E7BA 4ORAA 1FCFA 1HP1A 5JPEA 2WDEA 3H63A 4TUIA 3HVQA 2IAEC 4LTYA 4MOYA 1SU1A 5GTUA 2P6BA 2NXFA 1S3NA 1TCOA 1XM7A 1WARA 1G5BA 2Z06A 5C1VA 3IB8A 1Z2WA 1OI8A 4H2FA 1OIDA 1UF3A 3H60A 3PSNA 1USHA 3RL4A 3THOB 4G9JA 3ICFA 3RL3A 1OIEA 5B8IA 1FC9A 4HD0A 1K32A 1WAO1 4O5GA 3AUZA 2O8AA 1KBPA 2R17A 4H2GA 4GHNA 1QFCA 3JYFA 3N5UA 5JJTA 1T70A 2Z72A 3DSCA 2KKNA 2QFPA 4FBQA 4ORBA 3D03A 4DSYA 1V73A 2XMOA 2GJUA 1II7A 2IE3C 4LU9A 3RL5A 3TGHA 2YEQA 2NPPC 2NYMC 3ZTVA 2ZO9B 3FLOA 3DJAA 4JA9A 4V0XA 1J7XA 4JC0A 4UWQA 4IL1A 3K50A 3K7WC 3H69A 3H61A 3EGHA 3QFKA 3GMFA 3THNA 4AE2A 2BCDA 4ORCA 2USHA 3KBPA 1FJMA 3QFNA 4H1YP 2Z1AA 3H64A 3C9FA 2IE4C 1QHWA 3FGAC 2O8GA 2WDCA 4MP0A 4V0WA 2BDXA 1M63A 5EQVA 1S3LA 2WDFA 4UT2A 5DNYA 1S95A 3DW8C 4Q7FA 5HPEA 1N6DA 4OR9A 1JK7A 3T1IA 2QJCA 1S70A 3LL8A 4YKEA 1FC7A 1MF8A 3C5WC 3EGGA 4O43A 4DHLA 3IVEA 4O4KA 3IVDA 1S8EA 4L8KA 1T71A 1U32A 4I5LC 4M0VA 2A22A 5JPFA 3H68A 1N6FA 3P71C 3MOGA 1HPUA 4FBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  3D03 A;  2DXL A;  2DXN A;  2ZO9 B; 
#chains in the Genus database with same CATH topology
 3LKL A;  4JA7 A;  4MOV A;  2HY1 A;  3CK2 A;  1W24 A;  3DOR A;  4J6O A;  4FBW A;  4ZX2 A;  3DSD A;  5EUX A;  2BQ8 X;  4H2B A;  1NNW A;  1AUZ A;  4O24 A;  1BUZ A;  4V0V A;  3ZU0 A;  4F0Z A;  4UT3 A;  4TUG A;  4NZV A;  3H66 A;  2ZOA A;  2JOG A;  2RRL A;  3QDQ A;  2Q8U A;  3IB7 A;  2DXL A;  4XS5 A;  3H62 B;  3V4Y A;  5INB A;  4L1C A;  3QFO A;  3DUP A;  3OIZ A;  4QTP A;  4ZVZ A;  3H67 A;  4FCX A;  1S3M A;  1XZW A;  3PSO A;  5EUU A;  4H1S A;  1AUI A;  1HO5 A;  3QFM A;  4IYP C;  4KKZ A;  5IOH A;  1BPL A;  2WDD A;  3E0J A;  3IH8 A;  4KBP A;  1N6E A;  2NYL C;  3GVE A;  4I5N C;  1V0F A;  3GHF A;  5F3W A;  3LLO A;  2HYO A;  4B2O A;  3AV0 A;  1WXX A;  3IHA A;  5EUW A;  2ZBM A;  3QG5 C;  3MGL A;  2DFJ A;  3K7V C;  2CV9 A;  1TID B;  4UT3 B;  4WWL A;  3E7A A;  5J28 A;  1UTE A;  1Z2X A;  2KLN A;  3IF5 A;  3V97 A;  2HYP A;  4LAC C;  1IT6 A;  2YVT A;  4XPN A;  2DXN A;  3ZTB A;  2AHD A;  3NY7 A;  3RQZ A;  4DT2 A;  4AEJ A;  2QFR A;  1FC6 A;  4H2I A;  3E7B A;  4ORA A;  1FCF A;  2OAS A;  4HYL A;  3ZXN A;  1HP1 A;  1HF2 A;  2WDE A;  5JPE A;  3H63 A;  4TUI A;  3HVQ A;  3OIR A;  5EUS A;  2IAE C;  4LTY A;  4MOY A;  1SU1 A;  5GTU A;  2P6B A;  2NXF A;  3JU4 A;  1S3N A;  3AGD A;  1TCO A;  1WXW A;  4DMG A;  1XM7 A;  1SBO A;  1WAR A;  1G5B A;  2Z06 A;  5C1V A;  3IB8 A;  1THN B;  1Z2W A;  1OI8 A;  4H2F A;  1OID A;  1UF3 A;  3H60 A;  3PSN A;  1USH A;  3RL4 A;  3LDF A;  3THO B;  3F43 A;  4G9J A;  3ICF A;  3VSE A;  4DGH A;  3RL3 A;  1OIE A;  5B8I A;  1FC9 A;  3GVJ A;  4HD0 A;  1K32 A;  2B78 A;  3T6O A;  1WAO 1;  3AUZ A;  3D3U A;  1KBP A;  2O8A A;  2R17 A;  4O5G A;  4H2G A;  4GHN A;  1H4X A;  1QFC A;  3JYF A;  3N5U A;  5JJT A;  1T70 A;  2Z72 A;  2CWW A;  3DSC A;  2KKN A;  2QFP A;  3GVK A;  3GK7 A;  3IHB A;  4FBQ A;  4ORB A;  3IH9 A;  3D03 A;  3GVL A;  4DSY A;  1V73 A;  2XMO A;  2GJU A;  1II7 A;  2IE3 C;  4LU9 A;  3RL5 A;  5EZB A;  3TGH A;  2YEQ A;  2NPP C;  4HIZ A;  3V8V A;  2NYM C;  3ZTV A;  2ZO9 B;  3FLO A;  3DJA A;  4JA9 A;  1H4Y A;  4DGF A;  1J7X A;  4V0X A;  1H4Z A;  4JC0 A;  4IL1 A;  4UWQ A;  3K50 A;  3K7W C;  3H69 A;  3H61 A;  3EGH A;  3QFK A;  3GMF A;  3THN A;  4AE2 A;  2BCD A;  4ORC A;  2USH A;  3KBP A;  1V0E A;  1FJM A;  3QFN A;  4H1Y P;  2Z1A A;  3H64 A;  3C9F A;  2IE4 C;  1QHW A;  3FGA C;  1T6R A;  1TIL B;  2O8G A;  2WDC A;  4MP0 A;  2BDX A;  1M63 A;  3C0K A;  4V0W A;  5EQV A;  1S3L A;  2WDF A;  4UT2 A;  5DNY A;  1S95 A;  3DW8 C;  4Q7F A;  5HPE A;  2VY9 A;  1N6D A;  1TH8 B;  1VC1 A;  1JK7 A;  4OR9 A;  2KA5 A;  3T1I A;  5EUZ A;  2QJC A;  1S70 A;  3LL8 A;  4YKE A;  1FC7 A;  1MF8 A;  3C5W C;  3EGG A;  4O43 A;  4DHL A;  3IVE A;  4O4K A;  3IVD A;  1S8E A;  3AGE A;  4L8K A;  1T71 A;  1U32 A;  4I5L C;  2AS0 A;  2A22 A;  4M0V A;  5JPF A;  3H68 A;  1N6F A;  3P71 C;  3MOG A;  1HPU A;  4FBK A;  3EH7 A; 
#chains in the Genus database with same CATH homology
 4JA7 A;  4MOV A;  2HY1 A;  3CK2 A;  1W24 A;  3DOR A;  4J6O A;  4FBW A;  4ZX2 A;  3DSD A;  2BQ8 X;  4H2B A;  4O24 A;  1NNW A;  4V0V A;  3ZU0 A;  4F0Z A;  4UT3 A;  4TUG A;  4NZV A;  3H66 A;  2ZOA A;  2JOG A;  2RRL A;  2Q8U A;  3IB7 A;  2DXL A;  3H62 B;  3V4Y A;  5INB A;  4L1C A;  3QFO A;  3DUP A;  4ZVZ A;  3H67 A;  4FCX A;  1S3M A;  1XZW A;  3PSO A;  4H1S A;  4IYP C;  1AUI A;  1HO5 A;  3QFM A;  5IOH A;  4KKZ A;  1BPL A;  2WDD A;  3E0J A;  4KBP A;  1N6E A;  2NYL C;  3GVE A;  4I5N C;  3GHF A;  5F3W A;  4B2O A;  2HYO A;  3AV0 A;  2ZBM A;  3QG5 C;  2DFJ A;  3K7V C;  2CV9 A;  4UT3 B;  4WWL A;  3E7A A;  5J28 A;  1UTE A;  1Z2X A;  4LAC C;  2HYP A;  1IT6 A;  2YVT A;  4XPN A;  2DXN A;  2AHD A;  3RQZ A;  4DT2 A;  4AEJ A;  2QFR A;  1FC6 A;  4H2I A;  3E7B A;  4ORA A;  1FCF A;  1HP1 A;  5JPE A;  2WDE A;  3H63 A;  4TUI A;  3HVQ A;  2IAE C;  4LTY A;  4MOY A;  1SU1 A;  5GTU A;  2P6B A;  2NXF A;  1S3N A;  1TCO A;  1XM7 A;  1WAR A;  1G5B A;  2Z06 A;  5C1V A;  3IB8 A;  1Z2W A;  1OI8 A;  4H2F A;  1OID A;  1UF3 A;  3H60 A;  3PSN A;  1USH A;  3RL4 A;  3THO B;  4G9J A;  3ICF A;  3RL3 A;  1OIE A;  5B8I A;  1FC9 A;  4HD0 A;  1K32 A;  1WAO 1;  4O5G A;  3AUZ A;  2O8A A;  1KBP A;  2R17 A;  4H2G A;  4GHN A;  1QFC A;  3JYF A;  3N5U A;  5JJT A;  1T70 A;  2Z72 A;  3DSC A;  2KKN A;  2QFP A;  4FBQ A;  4ORB A;  3D03 A;  4DSY A;  1V73 A;  2XMO A;  2GJU A;  1II7 A;  2IE3 C;  4LU9 A;  3RL5 A;  3TGH A;  2YEQ A;  2NPP C;  2NYM C;  3ZTV A;  2ZO9 B;  3FLO A;  3DJA A;  4JA9 A;  4V0X A;  1J7X A;  4JC0 A;  4UWQ A;  4IL1 A;  3K50 A;  3K7W C;  3H69 A;  3H61 A;  3EGH A;  3QFK A;  3GMF A;  3THN A;  4AE2 A;  2BCD A;  4ORC A;  2USH A;  3KBP A;  1FJM A;  3QFN A;  4H1Y P;  2Z1A A;  3H64 A;  3C9F A;  2IE4 C;  1QHW A;  3FGA C;  2O8G A;  2WDC A;  4MP0 A;  4V0W A;  2BDX A;  1M63 A;  5EQV A;  1S3L A;  2WDF A;  4UT2 A;  5DNY A;  1S95 A;  3DW8 C;  4Q7F A;  5HPE A;  1N6D A;  4OR9 A;  1JK7 A;  3T1I A;  2QJC A;  1S70 A;  3LL8 A;  4YKE A;  1FC7 A;  1MF8 A;  3C5W C;  3EGG A;  4O43 A;  4DHL A;  3IVE A;  4O4K A;  3IVD A;  1S8E A;  4L8K A;  1T71 A;  1U32 A;  4I5L C;  4M0V A;  2A22 A;  5JPF A;  3H68 A;  1N6F A;  3P71 C;  3MOG A;  1HPU A;  4FBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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