3D03A

1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
274
structure length
274
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 83
structure length 274
sequence length 274
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 3d03A02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 3d03A01
2DXNA 2ZO9B 3D03A 2DXLA 2ZOAA
chains in the Genus database with same CATH superfamily
1T6RA 3LKLA 2DXNA 1V73A 1TCOA 3QFOA 4YKEA 3MGLA 5C1VA 3E7AA 3C9FA 1K32A 1G5BA 1Z2WA 2ZOAA 4JA9A 3AV0A 3IB8A 3DUPA 4WWLA 4H2FA 4XS5A 3QFNA 4HIZA 4NZVA 5EZBA 2YVTA 3EGHA 3AGEA 1U32A 4MOYA 1AUIA 5HPEA 1THNB 3KBPA 3OIRA 1TIDB 4QTPA 4DMGA 3OIZA 2Z72A 4UT3B 5J28A 2KA5A 1WXXA 2BDXA 1OIDA 1FJMA 5B8IA 4H2GA 1S70A 1WXWA 3EH7A 3K50A 2VY9A 4J6OA 3RQZA 1T71A 4I5LC 2WDDA 5GTUA 3LLOA 4O5GA 3IH9A 4H2BA 2KKNA 3V4YA 4UT3A 5IOHA 3CK2A 1USHA 2A22A 3HVQA 4ORAA 2NPPC 3RL3A 1N6EA 3NY7A 3ZTBA 1BPLA 4FBWA 5INBA 3H63A 1WARA 4DSYA 4GHNA 2ZBMA 4HD0A 3TGHA 1H4ZA 1HO5A 1FCFA 3GVJA 4LTYA 4DHLA 1FC6A 2USHA 3PSNA 5DNYA 2XMOA 1FC9A 3H67A 3FGAC 3THOB 2NYMC 1WAO1 3ZU0A 3DSDA 3AGDA 3K7WC 1BUZA 4OR9A 1QHWA 2IAEC 4UT2A 1OI8A 1S95A 1UF3A 3AUZA 3FLOA 4DGHA 3IVDA 4O4KA 4AE2A 5JJTA 3D3UA 3P71C 1Z2XA 4TUGA 3C0KA 3IHBA 5EUUA 4TUIA 4IL1A 2WDFA 3GVKA 4H2IA 4G9JA 2O8AA 2DXLA 3V97A 2AHDA 2NYLC 2QFPA 2HYPA 2QJCA 1V0EA 1QFCA 4V0WA 2CWWA 2R17A 1H4XA 3N5UA 4ORCA 1T70A 1SU1A 1M63A 3H68A 3PSOA 4B2OA 4FBKA 2Z06A 3GVEA 3H62B 3JU4A 4LACC 3IHAA 1TILB 3IH8A 4JC0A 3ZXNA 3MOGA 3K7VC 3QFMA 4ORBA 2OASA 5EUSA 4IYPC 4H1SA 4V0XA 1N6DA 3IF5A 4DGFA 1FC7A 1S8EA 2IE4C 4H1YP 2QFRA 3EGGA 3LL8A 3RL5A 3H60A 2RRLA 4MP0A 1AUZA 3T6OA 1S3NA 3T1IA 4F0ZA 3QFKA 5JPFA 3GHFA 2P6BA 1S3LA 2HYOA 1OIEA 1II7A 1JK7A 3F43A 4DT2A 3GVLA 2Z1AA 3DORA 3H61A 2ZO9B 3DJAA 3GMFA 1W24A 3IB7A 3D03A 2CV9A 1XM7A 1V0FA 2Q8UA 2AS0A 2KLNA 2NXFA 3JYFA 2BQ8X 3H69A 1NNWA 1IT6A 4AEJA 3C5WC 3LDFA 2DFJA 4M0VA 5EUXA 3THNA 1HF2A 2WDCA 1HP1A 4I5NC 3RL4A 1XZWA 3QG5C 4MOVA 4KKZA 4L1CA 4UWQA 1VC1A 2BCDA 3DW8C 5EQVA 4KBPA 2WDEA 1TH8B 2JOGA 2HY1A 1UTEA 3E0JA 3H64A 4HYLA 3V8VA 5EUZA 3ICFA 4ZX2A 4XPNA 3QDQA 2B78A 5EUWA 4JA7A 4O24A 4ZVZA 3GK7A 2GJUA 4Q7FA 3VSEA 4LU9A 1H4YA 1KBPA 1J7XA 2YEQA 2IE3C 3H66A 3IVEA 3DSCA 1MF8A 5F3WA 1N6FA 3E7BA 4FBQA 1HPUA 4O43A 2O8GA 5JPEA 4V0VA 3ZTVA 1SBOA 1S3MA 4L8KA 4FCXA
chains in the Genus database with same CATH topology
2DXNA 1V73A 1TCOA 3QFOA 4YKEA 5C1VA 3E7AA 3C9FA 1K32A 1G5BA 1Z2WA 2ZOAA 4JA9A 3AV0A 3IB8A 3DUPA 4WWLA 4H2FA 3QFNA 4NZVA 3EGHA 2YVTA 5HPEA 1U32A 4MOYA 1AUIA 3KBPA 2Z72A 4UT3B 5J28A 2BDXA 1OIDA 1FJMA 5B8IA 4H2GA 1S70A 3K50A 4J6OA 3RQZA 1T71A 4I5LC 2WDDA 5GTUA 4O5GA 4H2BA 2KKNA 3V4YA 4UT3A 5IOHA 3CK2A 1USHA 2A22A 3HVQA 4ORAA 2NPPC 3RL3A 1N6EA 1BPLA 4FBWA 5INBA 3H63A 1WARA 4DSYA 4GHNA 2ZBMA 4HD0A 3TGHA 1HO5A 1FCFA 4LTYA 4DHLA 1FC6A 2USHA 3PSNA 5DNYA 2XMOA 1FC9A 3H67A 3FGAC 3THOB 2NYMC 1WAO1 3ZU0A 3DSDA 3K7WC 4OR9A 1QHWA 2IAEC 4UT2A 1OI8A 1S95A 1UF3A 3AUZA 3FLOA 3IVDA 4O4KA 4AE2A 5JJTA 3P71C 1Z2XA 4TUGA 4TUIA 4IL1A 2WDFA 4H2IA 4G9JA 2O8AA 2DXLA 2AHDA 2NYLC 2QFPA 2HYPA 2QJCA 1QFCA 4V0WA 2R17A 3N5UA 4ORCA 1T70A 1SU1A 1M63A 3H68A 3PSOA 4B2OA 4FBKA 2Z06A 3GVEA 3H62B 4LACC 4JC0A 3K7VC 3MOGA 3QFMA 4V0XA 4ORBA 4IYPC 4H1SA 1N6DA 1FC7A 1S8EA 2IE4C 4H1YP 2QFRA 3EGGA 3LL8A 3RL5A 3H60A 2RRLA 4MP0A 1S3NA 3T1IA 4F0ZA 3QFKA 5JPFA 3GHFA 2P6BA 1S3LA 2HYOA 1OIEA 1II7A 1JK7A 4DT2A 2Z1AA 3DORA 3H61A 2ZO9B 3DJAA 3GMFA 1W24A 3IB7A 3D03A 2CV9A 1XM7A 2Q8UA 2NXFA 3JYFA 2BQ8X 3H69A 1NNWA 1IT6A 4AEJA 3C5WC 2DFJA 3THNA 4M0VA 2WDCA 1HP1A 4I5NC 3RL4A 1XZWA 3QG5C 4MOVA 4KKZA 4L1CA 4UWQA 2BCDA 3DW8C 5EQVA 4KBPA 2WDEA 2JOGA 2HY1A 1UTEA 3E0JA 3H64A 3ICFA 4ZX2A 4XPNA 4JA7A 4O24A 4ZVZA 2GJUA 4Q7FA 4LU9A 1KBPA 1J7XA 2YEQA 2IE3C 3H66A 3IVEA 3DSCA 1MF8A 5F3WA 1N6FA 3E7BA 4FBQA 1HPUA 4O43A 2O8GA 5JPEA 4V0VA 3ZTVA 1S3MA 4FCXA 4L8KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXN A;  2ZO9 B;  3D03 A;  2DXL A;  2ZOA A; 
#chains in the Genus database with same CATH topology
 1T6R A;  3LKL A;  2DXN A;  1V73 A;  1TCO A;  3QFO A;  4YKE A;  3MGL A;  5C1V A;  3E7A A;  3C9F A;  1K32 A;  1G5B A;  1Z2W A;  2ZOA A;  4JA9 A;  3AV0 A;  3IB8 A;  3DUP A;  4WWL A;  4H2F A;  4XS5 A;  3QFN A;  4HIZ A;  4NZV A;  5EZB A;  2YVT A;  3EGH A;  3AGE A;  1U32 A;  4MOY A;  1AUI A;  5HPE A;  1THN B;  3KBP A;  3OIR A;  1TID B;  4QTP A;  4DMG A;  3OIZ A;  2Z72 A;  4UT3 B;  5J28 A;  2KA5 A;  1WXX A;  2BDX A;  1OID A;  1FJM A;  5B8I A;  4H2G A;  1S70 A;  1WXW A;  3EH7 A;  3K50 A;  2VY9 A;  4J6O A;  3RQZ A;  1T71 A;  4I5L C;  2WDD A;  5GTU A;  3LLO A;  4O5G A;  3IH9 A;  4H2B A;  2KKN A;  3V4Y A;  4UT3 A;  5IOH A;  3CK2 A;  1USH A;  2A22 A;  3HVQ A;  4ORA A;  2NPP C;  3RL3 A;  1N6E A;  3NY7 A;  3ZTB A;  1BPL A;  4FBW A;  5INB A;  3H63 A;  1WAR A;  4DSY A;  4GHN A;  2ZBM A;  4HD0 A;  3TGH A;  1H4Z A;  1HO5 A;  1FCF A;  3GVJ A;  4LTY A;  4DHL A;  1FC6 A;  2USH A;  3PSN A;  5DNY A;  2XMO A;  1FC9 A;  3H67 A;  3FGA C;  3THO B;  2NYM C;  1WAO 1;  3ZU0 A;  3DSD A;  3AGD A;  3K7W C;  1BUZ A;  4OR9 A;  1QHW A;  2IAE C;  4UT2 A;  1OI8 A;  1S95 A;  1UF3 A;  3AUZ A;  3FLO A;  4DGH A;  3IVD A;  4O4K A;  4AE2 A;  5JJT A;  3D3U A;  3P71 C;  1Z2X A;  4TUG A;  3C0K A;  3IHB A;  5EUU A;  4TUI A;  4IL1 A;  2WDF A;  3GVK A;  4H2I A;  4G9J A;  2O8A A;  2DXL A;  3V97 A;  2AHD A;  2NYL C;  2QFP A;  2HYP A;  2QJC A;  1V0E A;  1QFC A;  4V0W A;  2CWW A;  2R17 A;  1H4X A;  3N5U A;  4ORC A;  1T70 A;  1SU1 A;  1M63 A;  3H68 A;  3PSO A;  4B2O A;  4FBK A;  2Z06 A;  3GVE A;  3H62 B;  3JU4 A;  4LAC C;  3IHA A;  1TIL B;  3IH8 A;  4JC0 A;  3ZXN A;  3MOG A;  3K7V C;  3QFM A;  4ORB A;  2OAS A;  5EUS A;  4IYP C;  4H1S A;  4V0X A;  1N6D A;  3IF5 A;  4DGF A;  1FC7 A;  1S8E A;  2IE4 C;  4H1Y P;  2QFR A;  3EGG A;  3LL8 A;  3RL5 A;  3H60 A;  2RRL A;  4MP0 A;  1AUZ A;  3T6O A;  1S3N A;  3T1I A;  4F0Z A;  3QFK A;  5JPF A;  3GHF A;  2P6B A;  1S3L A;  2HYO A;  1OIE A;  1II7 A;  1JK7 A;  3F43 A;  4DT2 A;  3GVL A;  2Z1A A;  3DOR A;  3H61 A;  2ZO9 B;  3DJA A;  3GMF A;  1W24 A;  3IB7 A;  3D03 A;  2CV9 A;  1XM7 A;  1V0F A;  2Q8U A;  2AS0 A;  2KLN A;  2NXF A;  3JYF A;  2BQ8 X;  3H69 A;  1NNW A;  1IT6 A;  4AEJ A;  3C5W C;  3LDF A;  2DFJ A;  4M0V A;  5EUX A;  3THN A;  1HF2 A;  2WDC A;  1HP1 A;  4I5N C;  3RL4 A;  1XZW A;  3QG5 C;  4MOV A;  4KKZ A;  4L1C A;  4UWQ A;  1VC1 A;  2BCD A;  3DW8 C;  5EQV A;  4KBP A;  2WDE A;  1TH8 B;  2JOG A;  2HY1 A;  1UTE A;  3E0J A;  3H64 A;  4HYL A;  3V8V A;  5EUZ A;  3ICF A;  4ZX2 A;  4XPN A;  3QDQ A;  2B78 A;  5EUW A;  4JA7 A;  4O24 A;  4ZVZ A;  3GK7 A;  2GJU A;  4Q7F A;  3VSE A;  4LU9 A;  1H4Y A;  1KBP A;  1J7X A;  2YEQ A;  2IE3 C;  3H66 A;  3IVE A;  3DSC A;  1MF8 A;  5F3W A;  1N6F A;  3E7B A;  4FBQ A;  1HPU A;  4O43 A;  2O8G A;  5JPE A;  4V0V A;  3ZTV A;  1SBO A;  1S3M A;  4L8K A;  4FCX A; 
#chains in the Genus database with same CATH homology
 2DXN A;  1V73 A;  1TCO A;  3QFO A;  4YKE A;  5C1V A;  3E7A A;  3C9F A;  1K32 A;  1G5B A;  1Z2W A;  2ZOA A;  4JA9 A;  3AV0 A;  3IB8 A;  3DUP A;  4WWL A;  4H2F A;  3QFN A;  4NZV A;  3EGH A;  2YVT A;  5HPE A;  1U32 A;  4MOY A;  1AUI A;  3KBP A;  2Z72 A;  4UT3 B;  5J28 A;  2BDX A;  1OID A;  1FJM A;  5B8I A;  4H2G A;  1S70 A;  3K50 A;  4J6O A;  3RQZ A;  1T71 A;  4I5L C;  2WDD A;  5GTU A;  4O5G A;  4H2B A;  2KKN A;  3V4Y A;  4UT3 A;  5IOH A;  3CK2 A;  1USH A;  2A22 A;  3HVQ A;  4ORA A;  2NPP C;  3RL3 A;  1N6E A;  1BPL A;  4FBW A;  5INB A;  3H63 A;  1WAR A;  4DSY A;  4GHN A;  2ZBM A;  4HD0 A;  3TGH A;  1HO5 A;  1FCF A;  4LTY A;  4DHL A;  1FC6 A;  2USH A;  3PSN A;  5DNY A;  2XMO A;  1FC9 A;  3H67 A;  3FGA C;  3THO B;  2NYM C;  1WAO 1;  3ZU0 A;  3DSD A;  3K7W C;  4OR9 A;  1QHW A;  2IAE C;  4UT2 A;  1OI8 A;  1S95 A;  1UF3 A;  3AUZ A;  3FLO A;  3IVD A;  4O4K A;  4AE2 A;  5JJT A;  3P71 C;  1Z2X A;  4TUG A;  4TUI A;  4IL1 A;  2WDF A;  4H2I A;  4G9J A;  2O8A A;  2DXL A;  2AHD A;  2NYL C;  2QFP A;  2HYP A;  2QJC A;  1QFC A;  4V0W A;  2R17 A;  3N5U A;  4ORC A;  1T70 A;  1SU1 A;  1M63 A;  3H68 A;  3PSO A;  4B2O A;  4FBK A;  2Z06 A;  3GVE A;  3H62 B;  4LAC C;  4JC0 A;  3K7V C;  3MOG A;  3QFM A;  4V0X A;  4ORB A;  4IYP C;  4H1S A;  1N6D A;  1FC7 A;  1S8E A;  2IE4 C;  4H1Y P;  2QFR A;  3EGG A;  3LL8 A;  3RL5 A;  3H60 A;  2RRL A;  4MP0 A;  1S3N A;  3T1I A;  4F0Z A;  3QFK A;  5JPF A;  3GHF A;  2P6B A;  1S3L A;  2HYO A;  1OIE A;  1II7 A;  1JK7 A;  4DT2 A;  2Z1A A;  3DOR A;  3H61 A;  2ZO9 B;  3DJA A;  3GMF A;  1W24 A;  3IB7 A;  3D03 A;  2CV9 A;  1XM7 A;  2Q8U A;  2NXF A;  3JYF A;  2BQ8 X;  3H69 A;  1NNW A;  1IT6 A;  4AEJ A;  3C5W C;  2DFJ A;  3THN A;  4M0V A;  2WDC A;  1HP1 A;  4I5N C;  3RL4 A;  1XZW A;  3QG5 C;  4MOV A;  4KKZ A;  4L1C A;  4UWQ A;  2BCD A;  3DW8 C;  5EQV A;  4KBP A;  2WDE A;  2JOG A;  2HY1 A;  1UTE A;  3E0J A;  3H64 A;  3ICF A;  4ZX2 A;  4XPN A;  4JA7 A;  4O24 A;  4ZVZ A;  2GJU A;  4Q7F A;  4LU9 A;  1KBP A;  1J7X A;  2YEQ A;  2IE3 C;  3H66 A;  3IVE A;  3DSC A;  1MF8 A;  5F3W A;  1N6F A;  3E7B A;  4FBQ A;  1HPU A;  4O43 A;  2O8G A;  5JPE A;  4V0V A;  3ZTV A;  1S3M A;  4FCX A;  4L8K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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