3D0WA

Crystal structure of yflh protein from bacillus subtilis. northeast structural genomics consortium target sr326
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
86
structure length
86
Chain Sequence
GTIKEDILKDFEEFKGYLKKQVNRGKKLGLDDGKLVKSAAILGDYLAKHEEPQNGEEMLLQELWSVADEDEKEHLAQLLVKLVDKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords YflH protein
publication title Crystal structure of YflH protein from Bacillus subtilis.
rcsb
source organism Bacillus subtilis
total genus 30
structure length 86
sequence length 86
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11588 DUF3243 Protein of unknown function (DUF3243)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.760.20 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex; Chain D, domain 2 Cytochrome Bc1 Complex; Chain D, domain 2 3d0wA00
3D0WA
chains in the Genus database with same CATH superfamily
3L71D 1HJ5A 2I8FA 1OCDA 1K3GA 1MG2D 1ZZHA 1AYGA 2BCNB 3HQ7A 3PXTA 2GC7D 1C6RA 1H33B 1LS9A 1S6VB 1FCDC 1QYZA 1FJ0A 4WQ7A 3H1KD 3RMZA 4WQ8A 2GC4D 1NMLA 4FA4A 1HJ4A 2JTIB 1M60A 4Q5PA 1CXAA 1H32A 3WFDC 2GIWA 5CIGB 1CCHA 2LITA 1MG3D 2DVHA 1CRJA 3NWVA 1CSXA 3L73D 3WFCC 1FHBA 3ORVA 4EIFA 1C52A 1GQ1A 4FA9A 3TYIA 2BGVX 2ZXYA 1L9JC 3H1HD 1BE3D 1E2RA 1IZL0 3MK7B 4DY9A 3PXSA 1HCMA 5DF5A 4GEDB 1CSVA 1I8PA 1QL4A 3C2CA 3ZOOA 5C9MA 1C75A 3VRDA 1YEAA 1NIRA 4L1QA 1SQXD 1YCCA 3ZIYA 4V2KA 3SLEA 1CHHA 1IQCA 4FAVA 1YNRA 3CXHD 3CP5A 3H1JD 1LMSA 1HH7A 3A0BV 1KB9D 1RZ6A 3OCDB 3ZCFA 2FRCA 1ZRTD 2B10B 1U75B 1CTZA 3L75D 2ZBOA 2B11B 3L72D 3WU2V 1GIWA 3CXHW 2BLFB 3HQ8A 1HZUA 4LJIA 1CRCA 1SQVD 4H0KA 1BL9A 3SVWA 1M6ZA 4Y5RA 1NMIA 4WQDA 1E8EA 3O1YA 1CIGA 4KMGA 1E29A 1H1OA 1H33A 1KB0A 1DIIC 1SQQD 3L4MA 5GTIV 1YIQA 2AIUA 3HQ6A 4AAMA 1CEDA 3OA8A 1H31B 5DJQC 2XTSB 2N9JA 1C2NA 1AOFA 2DGEA 1CTJA 1AKKA 4WQEA 1EB7A 5E79V 2D0SA 1CSWA 1NTKD 1KX2A 4AALA 2BH5X 4N0KA 4WQ9A 1CTYA 3O0RC 4MU8A 3ZOXA 2C8SA 1YFCA 1CXCA 1F1CA 1U74B 3WUIA 4PWAA 2CA3B 3CYTI 2QJKB 2ORLA 1K3HA 3WC8A 2C1VA 2IBZD 1A2SA 3O20A 4AX3A 4U3FD 1CHJA 2C9XB 4EICA 2YCCA 4GYDA 2GB8B 1SQPD 1AOQA 3PH2B 3ZOWA 1N15A 2CE1A 155CA 1QKSA 2PCBB 4XXLA 3ZBMA 1W2LA 1LFMA 2BCCD 3WFBC 1FI7A 4PW9B 1WVEC 1PP9D 4D6TD 2OZ1A 2L4DA 1BGYD 3RLMA 2QJPB 4RSZA 1H32B 1CRHA 4L3HA 3L74D 1QL3A 1YTCA 1HJ3A 4WQCA 1YICA 5GTHV 3CX5D 3SXTA 3CWBD 5B66V 2EXVA 3VYMA 1I6DA 2B4ZA 1H9XA 1DW1A 1HZVA 3RN1A 5TISV 2ZZS1 4EIEA 2HV4A 1IRWA 2LIRA 2FYUD 1N90A 1A56A 2AXTV 1CRYA 1ETPA 1RAQA 1FI3A 5B6QA 3CX5W 3JBTB 3HQ9A 5AURA 1KYOD 4AAOA 1DW3A 1NU1D 2C1UA 1CYCA 1MZ4A 4WQBA 1L0LD 2A06D 4FANA 3DMIA 1SQBD 1WEJF 2QJYB 3TGUD 2PACA 4YE1A 4AANA 1GU2A 2N18C 5H2FV 1KV9A 1CORA 1H31A 4UB6V 4FA5A 3X39A 5CYTR 1KYOW 3CU4A 1RAPA 1HROA 5EXQA 4P4QB 3H1LD 5IY51 3DR0A 4FB1A 2N3YA 1DW2A 3RN0A 1I6EA 2AI5A 4XYDB 2C2CA 1J3SA 5KLVD 2V08A 3ZOYA 1CRIA 1KIBA 1R0QA 1JDLA 3O5CA 5KAIV 4JCGA 1CYIA 1I8OA 1M70A 3H1ID 3NBSA 2C1DB 1CRGA 2V07A 1A8CA 2BPBB 2N9IA 1NTZD 3OA8B 2D0WA 1DT1A 1GJQA 5CIDB 2FYNB 5KLIB 1L9BC 2ZOOA 3A0HV 5KKZB 2N18B 3KZIV 3A9FA 2YIUB 451CA 2BH4X 1IO3A 4PJ0V 1DW0A 5DFSA 4K3IA 5KAFV 4PD4D 1CNOA 4FA1A 1DIQC 2B0ZB 1QN2A 5DJQB 1S5LV 5CICB 4QAOA 4O1WA 1LC1A 2YK3A 5CIFB 2MTAC 1I55A 1C6SA 1FI9A 4H0JA 1L0ND 3BCCD 3VNWA 1LC2A 1NNOA 1IRVA 2MHMA 1KX7A 1BCCD 3L4OA 2B12B 1W5CT 3OCDA 1I54A 1CHIA 3D0WA 3DP5A 2N3BA 2OZ1B 1GKSA 1B7VA 1I5TA 5C0ZA 1OAEA 1CSUA 3NBTA 1FOCA 1CYJA 5CIBB 1DVHA 5B5EV 2JQRA 1GDVA 1H9YA 1NTMD 351CA 1COTA 1N50A 2CE0A 1CC5A 1C6OA 4IL6V 1CIHA 1RZ5A 1CO6A 1CCRA 2CXBA 1HRCA 1YEBA 3L70D 1CIFA 1C2RA 4O1QA 2FWLA 2VHDA 4L3GA 4NFGB 1EZVD 1DVVA 4EIDA 5CIHB 4J20A 2CA4B 2YQBA 1CIEA 1C7MA 2PCCB 1PPJD 5CIEB 3PXWA 4UB8V 3SJLA 1VYDA 1P84D 3SWSA 1F1FA 4WQAA 1N9CA 2C1DA 2ZONG 3WFEC 3MK7C 3M97X
chains in the Genus database with same CATH topology
3D0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D0W A; 
#chains in the Genus database with same CATH topology
 3L71 D;  1HJ5 A;  2I8F A;  1OCD A;  1K3G A;  1MG2 D;  1ZZH A;  1AYG A;  2BCN B;  3HQ7 A;  3PXT A;  2GC7 D;  1C6R A;  1H33 B;  1LS9 A;  1S6V B;  1FCD C;  1QYZ A;  1FJ0 A;  4WQ7 A;  3H1K D;  3RMZ A;  4WQ8 A;  2GC4 D;  1NML A;  4FA4 A;  1HJ4 A;  2JTI B;  1M60 A;  4Q5P A;  1CXA A;  1H32 A;  3WFD C;  2GIW A;  5CIG B;  1CCH A;  2LIT A;  1MG3 D;  2DVH A;  1CRJ A;  3NWV A;  1CSX A;  3L73 D;  3WFC C;  1FHB A;  3ORV A;  4EIF A;  1C52 A;  1GQ1 A;  4FA9 A;  3TYI A;  2BGV X;  2ZXY A;  1L9J C;  3H1H D;  1BE3 D;  1E2R A;  1IZL 0;  3MK7 B;  4DY9 A;  3PXS A;  1HCM A;  5DF5 A;  4GED B;  1CSV A;  1I8P A;  1QL4 A;  3C2C A;  3ZOO A;  5C9M A;  1C75 A;  3VRD A;  1YEA A;  1NIR A;  4L1Q A;  1SQX D;  1YCC A;  3ZIY A;  4V2K A;  3SLE A;  1CHH A;  1IQC A;  4FAV A;  1YNR A;  3CXH D;  3CP5 A;  3H1J D;  1LMS A;  1HH7 A;  3A0B V;  1KB9 D;  1RZ6 A;  3OCD B;  3ZCF A;  2FRC A;  1ZRT D;  2B10 B;  1U75 B;  1CTZ A;  3L75 D;  2ZBO A;  2B11 B;  3L72 D;  3WU2 V;  1GIW A;  3CXH W;  2BLF B;  3HQ8 A;  1HZU A;  4LJI A;  1CRC A;  1SQV D;  4H0K A;  1BL9 A;  3SVW A;  1M6Z A;  4Y5R A;  1NMI A;  4WQD A;  1E8E A;  3O1Y A;  1CIG A;  4KMG A;  1E29 A;  1H1O A;  1H33 A;  1KB0 A;  1DII C;  1SQQ D;  3L4M A;  5GTI V;  1YIQ A;  2AIU A;  3HQ6 A;  4AAM A;  1CED A;  3OA8 A;  1H31 B;  5DJQ C;  2XTS B;  2N9J A;  1C2N A;  1AOF A;  2DGE A;  1CTJ A;  1AKK A;  4WQE A;  1EB7 A;  5E79 V;  2D0S A;  1CSW A;  1NTK D;  1KX2 A;  4AAL A;  2BH5 X;  4N0K A;  4WQ9 A;  1CTY A;  3O0R C;  4MU8 A;  3ZOX A;  2C8S A;  1YFC A;  1CXC A;  1F1C A;  1U74 B;  3WUI A;  4PWA A;  2CA3 B;  3CYT I;  2QJK B;  2ORL A;  1K3H A;  3WC8 A;  2C1V A;  2IBZ D;  1A2S A;  3O20 A;  4AX3 A;  4U3F D;  1CHJ A;  2C9X B;  4EIC A;  2YCC A;  4GYD A;  2GB8 B;  1SQP D;  1AOQ A;  3PH2 B;  3ZOW A;  1N15 A;  2CE1 A;  155C A;  1QKS A;  2PCB B;  4XXL A;  3ZBM A;  1W2L A;  1LFM A;  2BCC D;  3WFB C;  1FI7 A;  4PW9 B;  1WVE C;  1PP9 D;  4D6T D;  2OZ1 A;  2L4D A;  1BGY D;  3RLM A;  2QJP B;  4RSZ A;  1H32 B;  1CRH A;  4L3H A;  3L74 D;  1QL3 A;  1YTC A;  1HJ3 A;  4WQC A;  1YIC A;  5GTH V;  3CX5 D;  3SXT A;  3CWB D;  5B66 V;  2EXV A;  3VYM A;  1I6D A;  2B4Z A;  1H9X A;  1DW1 A;  1HZV A;  3RN1 A;  5TIS V;  2ZZS 1;  4EIE A;  2HV4 A;  1IRW A;  2LIR A;  2FYU D;  1N90 A;  1A56 A;  2AXT V;  1CRY A;  1ETP A;  1RAQ A;  1FI3 A;  5B6Q A;  3CX5 W;  3JBT B;  3HQ9 A;  5AUR A;  1KYO D;  4AAO A;  1DW3 A;  1NU1 D;  2C1U A;  1CYC A;  1MZ4 A;  4WQB A;  1L0L D;  2A06 D;  4FAN A;  3DMI A;  1SQB D;  1WEJ F;  2QJY B;  3TGU D;  2PAC A;  4YE1 A;  4AAN A;  1GU2 A;  2N18 C;  5H2F V;  1KV9 A;  1COR A;  1H31 A;  4UB6 V;  4FA5 A;  3X39 A;  5CYT R;  1KYO W;  3CU4 A;  1RAP A;  1HRO A;  5EXQ A;  4P4Q B;  3H1L D;  5IY5 1;  3DR0 A;  4FB1 A;  2N3Y A;  1DW2 A;  3RN0 A;  1I6E A;  2AI5 A;  4XYD B;  2C2C A;  1J3S A;  5KLV D;  2V08 A;  3ZOY A;  1CRI A;  1KIB A;  1R0Q A;  1JDL A;  3O5C A;  5KAI V;  4JCG A;  1CYI A;  1I8O A;  1M70 A;  3H1I D;  3NBS A;  2C1D B;  1CRG A;  2V07 A;  1A8C A;  2BPB B;  2N9I A;  1NTZ D;  3OA8 B;  2D0W A;  1DT1 A;  1GJQ A;  5CID B;  2FYN B;  5KLI B;  1L9B C;  2ZOO A;  3A0H V;  5KKZ B;  2N18 B;  3KZI V;  3A9F A;  2YIU B;  451C A;  2BH4 X;  1IO3 A;  4PJ0 V;  1DW0 A;  5DFS A;  4K3I A;  5KAF V;  4PD4 D;  1CNO A;  4FA1 A;  1DIQ C;  2B0Z B;  1QN2 A;  5DJQ B;  1S5L V;  5CIC B;  4QAO A;  4O1W A;  1LC1 A;  2YK3 A;  5CIF B;  2MTA C;  1I55 A;  1C6S A;  1FI9 A;  4H0J A;  1L0N D;  3BCC D;  3VNW A;  1LC2 A;  1NNO A;  1IRV A;  2MHM A;  1KX7 A;  1BCC D;  3L4O A;  2B12 B;  1W5C T;  3OCD A;  1I54 A;  1CHI A;  3D0W A;  3DP5 A;  2N3B A;  2OZ1 B;  1GKS A;  1B7V A;  1I5T A;  5C0Z A;  1OAE A;  1CSU A;  3NBT A;  1FOC A;  1CYJ A;  5CIB B;  1DVH A;  5B5E V;  2JQR A;  1GDV A;  1H9Y A;  1NTM D;  351C A;  1COT A;  1N50 A;  2CE0 A;  1CC5 A;  1C6O A;  4IL6 V;  1CIH A;  1RZ5 A;  1CO6 A;  1CCR A;  2CXB A;  1HRC A;  1YEB A;  3L70 D;  1CIF A;  1C2R A;  4O1Q A;  2FWL A;  2VHD A;  4L3G A;  4NFG B;  1EZV D;  1DVV A;  4EID A;  5CIH B;  4J20 A;  2CA4 B;  2YQB A;  1CIE A;  1C7M A;  2PCC B;  1PPJ D;  5CIE B;  3PXW A;  4UB8 V;  3SJL A;  1VYD A;  1P84 D;  3SWS A;  1F1F A;  4WQA A;  1N9C A;  2C1D A;  2ZON G;  3WFE C;  3MK7 C;  3M97 X; 
#chains in the Genus database with same CATH homology
 3D0W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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