3D1MA

Crystal structure of sonic hedgehog bound to the third fniii domain of cdo
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
148
structure length
148
Chain Sequence
TPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein / cell adhesion
molecule keywords Sonic hedgehog protein
publication title The mode of Hedgehog binding to Ihog homologues is not conserved across different phyla.
pubmed doi rcsb
source organism Mus musculus
total genus 45
structure length 148
sequence length 148
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-05-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 3d1mA00
4C4MA 1TZPA 2WG4A 4MUSA 1U10A 2WFXA 3K7HB 4OAKA 3MXWA 4OXDA 3N1PB 2VO9A 4F78A 4NT9A 4C4NA 3N1RA 3N1QA 1VHHA 3N1MB 4JIDA 3N1GA 3K7JB 2IBGE 2WFRA 2WG3A 4MURA 3N1OA 4OX5A 5HNMA 1R44A 3M1NA 3K7IB 3N1FA 2WFQA 4MUQA 3D1MA 4D0YA 4OX3A 4MUTA 1LBUA 3HO5H 3K7GB 4MPHA
chains in the Genus database with same CATH superfamily
2J3WB 4C4MA 2J3RA 1TZPA 2WG4A 3HO5H 3NJCA 4MUSA 1U10A 2WFXA 2C0JB 3K7HB 4OAKA 3MXWA 2OSOA 2OSDA 4OXDA 3N1PB 2J3TA 2VO9A 4F78A 4NT9A 4C4NA 3N1RA 3KXCA 3N1QA 3CUED 2J3RB 1VHHA 2BJNA 3N1MB 3KXCC 2PWNA 1WC8A 4JIDA 3N1GA 3K7JB 2C0JA 2J3TB 2CFHA 2IBGE 3CUEB 2WFRA 2J3WD 2WG3A 4MURA 1WC9A 3N1OA 4OX5A 1R44A 3M1NA 5HNMA 3K7IB 3N1FA 2WFQA 2CFHC 3D1MA 4MUQA 4D0YA 4OX3A 4MUTA 1SZ7A 1LBUA 3K7GB 4MPHA
chains in the Genus database with same CATH topology
4C4MA 1TZPA 2WG4A 4MUSA 1U10A 2WFXA 3K7HB 4OAKA 3MXWA 4OXDA 3N1PB 2VO9A 4F78A 4NT9A 4C4NA 3N1RA 3N1QA 1VHHA 3N1MB 4JIDA 3N1GA 3K7JB 2IBGE 2WFRA 2WG3A 4MURA 3N1OA 4OX5A 5HNMA 1R44A 3M1NA 3K7IB 3N1FA 2WFQA 4MUQA 3D1MA 4D0YA 4OX3A 4MUTA 1LBUA 3HO5H 3K7GB 4MPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C4M A;  1TZP A;  2WG4 A;  4MUS A;  1U10 A;  2WFX A;  3K7H B;  4OAK A;  3MXW A;  4OXD A;  3N1P B;  2VO9 A;  4F78 A;  4NT9 A;  4C4N A;  3N1R A;  3N1Q A;  1VHH A;  3N1M B;  4JID A;  3N1G A;  3K7J B;  2IBG E;  2WFR A;  2WG3 A;  4MUR A;  3N1O A;  4OX5 A;  5HNM A;  1R44 A;  3M1N A;  3K7I B;  3N1F A;  2WFQ A;  4MUQ A;  3D1M A;  4D0Y A;  4OX3 A;  4MUT A;  1LBU A;  3HO5 H;  3K7G B;  4MPH A; 
#chains in the Genus database with same CATH topology
 2J3W B;  4C4M A;  2J3R A;  1TZP A;  2WG4 A;  3HO5 H;  3NJC A;  4MUS A;  1U10 A;  2WFX A;  2C0J B;  3K7H B;  4OAK A;  3MXW A;  2OSO A;  2OSD A;  4OXD A;  3N1P B;  2J3T A;  2VO9 A;  4F78 A;  4NT9 A;  4C4N A;  3N1R A;  3KXC A;  3N1Q A;  3CUE D;  2J3R B;  1VHH A;  2BJN A;  3N1M B;  3KXC C;  2PWN A;  1WC8 A;  4JID A;  3N1G A;  3K7J B;  2C0J A;  2J3T B;  2CFH A;  2IBG E;  3CUE B;  2WFR A;  2J3W D;  2WG3 A;  4MUR A;  1WC9 A;  3N1O A;  4OX5 A;  1R44 A;  3M1N A;  5HNM A;  3K7I B;  3N1F A;  2WFQ A;  2CFH C;  3D1M A;  4MUQ A;  4D0Y A;  4OX3 A;  4MUT A;  1SZ7 A;  1LBU A;  3K7G B;  4MPH A; 
#chains in the Genus database with same CATH homology
 4C4M A;  1TZP A;  2WG4 A;  4MUS A;  1U10 A;  2WFX A;  3K7H B;  4OAK A;  3MXW A;  4OXD A;  3N1P B;  2VO9 A;  4F78 A;  4NT9 A;  4C4N A;  3N1R A;  3N1Q A;  1VHH A;  3N1M B;  4JID A;  3N1G A;  3K7J B;  2IBG E;  2WFR A;  2WG3 A;  4MUR A;  3N1O A;  4OX5 A;  5HNM A;  1R44 A;  3M1N A;  3K7I B;  3N1F A;  2WFQ A;  4MUQ A;  3D1M A;  4D0Y A;  4OX3 A;  4MUT A;  1LBU A;  3HO5 H;  3K7G B;  4MPH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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