3D2HA

Structure of berberine bridge enzyme from eschscholzia californica, monoclinic crystal form
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
498
structure length
498
Chain Sequence
DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords berberine bridge-forming enzyme
publication title A concerted mechanism for berberine bridge enzyme
pubmed doi rcsb
source organism Eschscholzia californica
total genus 166
structure length 498
sequence length 498
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2008-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3d2hA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3d2hA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3d2hA03
2VFRA 3KJMA 1MBBA 2WDWA 2EXRA 1WVEA 2W54A 2W3RA 3FW7A 2Y3SA 3PQBA 5L6GA 5HQXA 5AE2A 1E8FA 1E0YA 3SR6B 1DZNA 1F0XA 3S1DA 4PVEA 3TSHA 1FFUC 2MBRA 1I19A 1N62C 3NS1B 3W8XA 1N5WC 3W8ZA 1W1LA 4PVJA 3RJ8A 2W55A 4XLOA 3AN1A 1AHZA 5FXDA 1WVFA 1VAOA 2E3TA 1N5XA 2IPIA 3D2HA 2AXRA 5K8EA 3S1FA 1N60C 4PVHA 4DNSA 3NRZB 2VFUA 2VFSA 4ZOHB 3RJAA 1JROA 1N63C 4BC9A 1AHUA 3HSUA 1VDVA 3PM9A 2GQUA 3B9JB 4BBYA 1WYGA 3ETRB 2GQTA 2QPMA 1W1QA 5ADZA 1ZR6A 1HSKA 1W1KA 3I99A 5FXFA 3TX1A 3C0PA 2Y4GA 3D2JA 3FW9A 4PYTA 5HMRA 5AE3A 4ML8A 4O95A 2Y3RA 3FW8A 5AE1A 2BVGA 2VAOA 1QLUA 1DIQA 1AHVA 1E8HA 5FXEA 3FWAA 2Y08A 3AM9A 3VTEA 1V97A 3W8WA 4EC3A 5L6FA 3D2DA 5I1VA 3AMZA 4PZFA 5D79A 3S1EA 3NVZB 3EUB3 4BC7A 4JB1A 4OALA 2W3SA 3TSJA 4JAYA 2QKNA 1FO4A 1E8GA 1ZXIC 2Q85A 1W1MA 1UXYA 2BVFA 3BW7A 4BCAA 3S1CA 1W1RA 3DQ0A 4UD8A 5AWVA 3POPA 2VFTA 2I0KA 5HHZA 1DIIA 5FXPA 1QLTA 3GSYA 2VFVA 1MBTA 1T3QC 1FFVC 4MLAA 1N61C 5I1WA 1W1JA 1W1SA 3JS8A 4PWCA 4PWBA 2Q4WA 2BVHA 4PVKA 1W1OA 1FIQB
chains in the Genus database with same CATH superfamily
2VFRA 3KJMA 3EJEB 1MBBA 1JRPA 2WDWA 2P4PA 2EXRA 1WVEA 2W54A 2W3RA 3FW7A 2Y3SA 3PQBA 3LLBA 5L6GA 5HQXA 5AE2A 1E8FA 1E0YA 3SR6B 1DZNA 1F0XA 3S1DA 4PVEA 3TSHA 1FFUC 2MBRA 1I19A 1N62C 3NS1B 3W8XA 1N5WC 3W8ZA 2YVSA 2P3HA 1W1LA 4PVJA 3RJ8A 2W55A 2P13A 3DEDA 4XLOA 3AN1A 1AHZA 5FXDA 1WVFA 1VAOA 2E3TA 1N5XA 2IPIA 5G5GB 3D2HA 2AXRA 5K8EA 3NVVB 1N60C 4PVHA 3S1FA 4DNSA 3NRZB 2VFUA 1RM6B 2RK5A 3NVYB 2VFSA 3LAEA 4ZOHB 3RJAA 1JROA 1N63C 4BC9A 1AHUA 3HSUA 1VDVA 3PM9A 2GQUA 3B9JB 4BBYA 1WYGA 3ETRB 2GQTA 2QPMA 1W1QA 5ADZA 1ZR6A 4HG0A 1HSKA 1W1KA 3I99A 5FXFA 3TX1A 3C0PA 2UUVA 2Y4GA 3D2JA 3FW9A 4PYTA 2PLSA 5HMRA 2O3GA 5AE3A 4ML8A 4O95A 2Y3RA 2UUUA 3FW8A 5AE1A 2BVGA 2VAOA 1QLUA 1DIQA 1AHVA 1E8HA 5FXEA 3FWAA 2Y08A 3AM9A 3VTEA 1V97A 3W8WA 4EC3A 5L6FA 3D2DA 5I1VA 3AMZA 4PZFA 5D79A 3S1EA 3NVZB 3EUB3 4BC7A 4JB1A 4OALA 2W3SA 3TSJA 2R8DA 3HRDC 4JAYA 3EJDB 2QKNA 3EJBB 1FO4A 1E8GA 1ZXIC 2Q85A 1W1MA 1UXYA 2BVFA 3BW7A 4BCAA 3S1CA 1W1RA 3DQ0A 4UD8A 5AWVA 3POPA 2VFTA 2I0KA 1SB3B 5HHZA 1DIIA 5G5HB 5FXPA 1QLTA 3GSYA 2VFVA 1MBTA 2NQWA 1T3QC 2PLIA 1FFVC 4MLAA 2OAIA 1N61C 2R2ZA 3NVWB 5I1WA 1W1JA 1W1SA 3JS8A 4PWCA 4PWBA 2Q4WA 2BVHA 4PVKA 1W1OA 1FIQB
chains in the Genus database with same CATH topology
2VFRA 3KJMA 1MBBA 1JRPA 2WDWA 2P4PA 2EXRA 1WVEA 2W54A 2W3RA 3FW7A 2Y3SA 3PQBA 3LLBA 5L6GA 5HQXA 5AE2A 1E8FA 1E0YA 3SR6B 1DZNA 1F0XA 3S1DA 4PVEA 3TSHA 1FFUC 2MBRA 1I19A 1N62C 3NS1B 3W8XA 1N5WC 3W8ZA 2YVSA 2P3HA 1W1LA 4PVJA 3RJ8A 2W55A 2P13A 3DEDA 4XLOA 3AN1A 1AHZA 5FXDA 1WVFA 1VAOA 2E3TA 1N5XA 2IPIA 5G5GB 3D2HA 2AXRA 5K8EA 3S1FA 1N60C 4PVHA 4DNSA 1RM6B 3NRZB 2VFUA 2RK5A 3NVVB 3NVYB 2VFSA 3LAEA 4ZOHB 3RJAA 1JROA 1N63C 4BC9A 1AHUA 3HSUA 1VDVA 3PM9A 2GQUA 3B9JB 4BBYA 1WYGA 3ETRB 2GQTA 2QPMA 1W1QA 5ADZA 1ZR6A 4HG0A 1HSKA 1W1KA 3I99A 5FXFA 3TX1A 3C0PA 2UUVA 2Y4GA 3D2JA 3FW9A 4PYTA 2PLSA 5HMRA 2O3GA 5AE3A 4ML8A 4O95A 2Y3RA 2UUUA 3FW8A 5AE1A 2BVGA 2VAOA 1QLUA 1DIQA 1AHVA 1E8HA 5FXEA 3FWAA 2Y08A 3AM9A 3VTEA 1V97A 3W8WA 4EC3A 5L6FA 3D2DA 5I1VA 3AMZA 4PZFA 5D79A 3S1EA 3NVZB 3EUB3 4BC7A 4JB1A 4OALA 2W3SA 3TSJA 2R8DA 3HRDC 4JAYA 2QKNA 1FO4A 1E8GA 1ZXIC 2Q85A 1W1MA 1UXYA 2BVFA 3BW7A 4BCAA 3S1CA 1W1RA 3DQ0A 4UD8A 5AWVA 3POPA 2VFTA 2I0KA 1SB3B 5HHZA 1DIIA 5G5HB 5FXPA 1QLTA 3GSYA 2VFVA 1MBTA 2NQWA 1T3QC 2PLIA 1FFVC 4MLAA 2OAIA 1N61C 2R2ZA 3NVWB 5I1WA 1W1JA 1W1SA 3JS8A 4PWCA 4PWBA 2Q4WA 2BVHA 4PVKA 1W1OA 1FIQB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFR A;  3KJM A;  1MBB A;  2WDW A;  2EXR A;  1WVE A;  2W54 A;  2W3R A;  3FW7 A;  2Y3S A;  3PQB A;  5L6G A;  5HQX A;  5AE2 A;  1E8F A;  1E0Y A;  3SR6 B;  1DZN A;  1F0X A;  3S1D A;  4PVE A;  3TSH A;  1FFU C;  2MBR A;  1I19 A;  1N62 C;  3NS1 B;  3W8X A;  1N5W C;  3W8Z A;  1W1L A;  4PVJ A;  3RJ8 A;  2W55 A;  4XLO A;  3AN1 A;  1AHZ A;  5FXD A;  1WVF A;  1VAO A;  2E3T A;  1N5X A;  2IPI A;  3D2H A;  2AXR A;  5K8E A;  3S1F A;  1N60 C;  4PVH A;  4DNS A;  3NRZ B;  2VFU A;  2VFS A;  4ZOH B;  3RJA A;  1JRO A;  1N63 C;  4BC9 A;  1AHU A;  3HSU A;  1VDV A;  3PM9 A;  2GQU A;  3B9J B;  4BBY A;  1WYG A;  3ETR B;  2GQT A;  2QPM A;  1W1Q A;  5ADZ A;  1ZR6 A;  1HSK A;  1W1K A;  3I99 A;  5FXF A;  3TX1 A;  3C0P A;  2Y4G A;  3D2J A;  3FW9 A;  4PYT A;  5HMR A;  5AE3 A;  4ML8 A;  4O95 A;  2Y3R A;  3FW8 A;  5AE1 A;  2BVG A;  2VAO A;  1QLU A;  1DIQ A;  1AHV A;  1E8H A;  5FXE A;  3FWA A;  2Y08 A;  3AM9 A;  3VTE A;  1V97 A;  3W8W A;  4EC3 A;  5L6F A;  3D2D A;  5I1V A;  3AMZ A;  4PZF A;  5D79 A;  3S1E A;  3NVZ B;  3EUB 3;  4BC7 A;  4JB1 A;  4OAL A;  2W3S A;  3TSJ A;  4JAY A;  2QKN A;  1FO4 A;  1E8G A;  1ZXI C;  2Q85 A;  1W1M A;  1UXY A;  2BVF A;  3BW7 A;  4BCA A;  3S1C A;  1W1R A;  3DQ0 A;  4UD8 A;  5AWV A;  3POP A;  2VFT A;  2I0K A;  5HHZ A;  1DII A;  5FXP A;  1QLT A;  3GSY A;  2VFV A;  1MBT A;  1T3Q C;  1FFV C;  4MLA A;  1N61 C;  5I1W A;  1W1J A;  1W1S A;  3JS8 A;  4PWC A;  4PWB A;  2Q4W A;  2BVH A;  4PVK A;  1W1O A;  1FIQ B; 
#chains in the Genus database with same CATH topology
 2VFR A;  3KJM A;  3EJE B;  1MBB A;  1JRP A;  2WDW A;  2P4P A;  2EXR A;  1WVE A;  2W54 A;  2W3R A;  3FW7 A;  2Y3S A;  3PQB A;  3LLB A;  5L6G A;  5HQX A;  5AE2 A;  1E8F A;  1E0Y A;  3SR6 B;  1DZN A;  1F0X A;  3S1D A;  4PVE A;  3TSH A;  1FFU C;  2MBR A;  1I19 A;  1N62 C;  3NS1 B;  3W8X A;  1N5W C;  3W8Z A;  2YVS A;  2P3H A;  1W1L A;  4PVJ A;  3RJ8 A;  2W55 A;  2P13 A;  3DED A;  4XLO A;  3AN1 A;  1AHZ A;  5FXD A;  1WVF A;  1VAO A;  2E3T A;  1N5X A;  2IPI A;  5G5G B;  3D2H A;  2AXR A;  5K8E A;  3NVV B;  1N60 C;  4PVH A;  3S1F A;  4DNS A;  3NRZ B;  2VFU A;  1RM6 B;  2RK5 A;  3NVY B;  2VFS A;  3LAE A;  4ZOH B;  3RJA A;  1JRO A;  1N63 C;  4BC9 A;  1AHU A;  3HSU A;  1VDV A;  3PM9 A;  2GQU A;  3B9J B;  4BBY A;  1WYG A;  3ETR B;  2GQT A;  2QPM A;  1W1Q A;  5ADZ A;  1ZR6 A;  4HG0 A;  1HSK A;  1W1K A;  3I99 A;  5FXF A;  3TX1 A;  3C0P A;  2UUV A;  2Y4G A;  3D2J A;  3FW9 A;  4PYT A;  2PLS A;  5HMR A;  2O3G A;  5AE3 A;  4ML8 A;  4O95 A;  2Y3R A;  2UUU A;  3FW8 A;  5AE1 A;  2BVG A;  2VAO A;  1QLU A;  1DIQ A;  1AHV A;  1E8H A;  5FXE A;  3FWA A;  2Y08 A;  3AM9 A;  3VTE A;  1V97 A;  3W8W A;  4EC3 A;  5L6F A;  3D2D A;  5I1V A;  3AMZ A;  4PZF A;  5D79 A;  3S1E A;  3NVZ B;  3EUB 3;  4BC7 A;  4JB1 A;  4OAL A;  2W3S A;  3TSJ A;  2R8D A;  3HRD C;  4JAY A;  3EJD B;  2QKN A;  3EJB B;  1FO4 A;  1E8G A;  1ZXI C;  2Q85 A;  1W1M A;  1UXY A;  2BVF A;  3BW7 A;  4BCA A;  3S1C A;  1W1R A;  3DQ0 A;  4UD8 A;  5AWV A;  3POP A;  2VFT A;  2I0K A;  1SB3 B;  5HHZ A;  1DII A;  5G5H B;  5FXP A;  1QLT A;  3GSY A;  2VFV A;  1MBT A;  2NQW A;  1T3Q C;  2PLI A;  1FFV C;  4MLA A;  2OAI A;  1N61 C;  2R2Z A;  3NVW B;  5I1W A;  1W1J A;  1W1S A;  3JS8 A;  4PWC A;  4PWB A;  2Q4W A;  2BVH A;  4PVK A;  1W1O A;  1FIQ B; 
#chains in the Genus database with same CATH homology
 2VFR A;  3KJM A;  1MBB A;  1JRP A;  2WDW A;  2P4P A;  2EXR A;  1WVE A;  2W54 A;  2W3R A;  3FW7 A;  2Y3S A;  3PQB A;  3LLB A;  5L6G A;  5HQX A;  5AE2 A;  1E8F A;  1E0Y A;  3SR6 B;  1DZN A;  1F0X A;  3S1D A;  4PVE A;  3TSH A;  1FFU C;  2MBR A;  1I19 A;  1N62 C;  3NS1 B;  3W8X A;  1N5W C;  3W8Z A;  2YVS A;  2P3H A;  1W1L A;  4PVJ A;  3RJ8 A;  2W55 A;  2P13 A;  3DED A;  4XLO A;  3AN1 A;  1AHZ A;  5FXD A;  1WVF A;  1VAO A;  2E3T A;  1N5X A;  2IPI A;  5G5G B;  3D2H A;  2AXR A;  5K8E A;  3S1F A;  1N60 C;  4PVH A;  4DNS A;  1RM6 B;  3NRZ B;  2VFU A;  2RK5 A;  3NVV B;  3NVY B;  2VFS A;  3LAE A;  4ZOH B;  3RJA A;  1JRO A;  1N63 C;  4BC9 A;  1AHU A;  3HSU A;  1VDV A;  3PM9 A;  2GQU A;  3B9J B;  4BBY A;  1WYG A;  3ETR B;  2GQT A;  2QPM A;  1W1Q A;  5ADZ A;  1ZR6 A;  4HG0 A;  1HSK A;  1W1K A;  3I99 A;  5FXF A;  3TX1 A;  3C0P A;  2UUV A;  2Y4G A;  3D2J A;  3FW9 A;  4PYT A;  2PLS A;  5HMR A;  2O3G A;  5AE3 A;  4ML8 A;  4O95 A;  2Y3R A;  2UUU A;  3FW8 A;  5AE1 A;  2BVG A;  2VAO A;  1QLU A;  1DIQ A;  1AHV A;  1E8H A;  5FXE A;  3FWA A;  2Y08 A;  3AM9 A;  3VTE A;  1V97 A;  3W8W A;  4EC3 A;  5L6F A;  3D2D A;  5I1V A;  3AMZ A;  4PZF A;  5D79 A;  3S1E A;  3NVZ B;  3EUB 3;  4BC7 A;  4JB1 A;  4OAL A;  2W3S A;  3TSJ A;  2R8D A;  3HRD C;  4JAY A;  2QKN A;  1FO4 A;  1E8G A;  1ZXI C;  2Q85 A;  1W1M A;  1UXY A;  2BVF A;  3BW7 A;  4BCA A;  3S1C A;  1W1R A;  3DQ0 A;  4UD8 A;  5AWV A;  3POP A;  2VFT A;  2I0K A;  1SB3 B;  5HHZ A;  1DII A;  5G5H B;  5FXP A;  1QLT A;  3GSY A;  2VFV A;  1MBT A;  2NQW A;  1T3Q C;  2PLI A;  1FFV C;  4MLA A;  2OAI A;  1N61 C;  2R2Z A;  3NVW B;  5I1W A;  1W1J A;  1W1S A;  3JS8 A;  4PWC A;  4PWB A;  2Q4W A;  2BVH A;  4PVK A;  1W1O A;  1FIQ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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