3D2JA

Structure of berberine bridge enzyme from eschscholzia californica, tetragonal crystal form
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
502
structure length
502
Chain Sequence
AGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFDY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords berberine bridge-forming enzyme
publication title A concerted mechanism for berberine bridge enzyme
pubmed doi rcsb
source organism Eschscholzia californica
total genus 165
structure length 502
sequence length 502
ec nomenclature ec 1.21.3.3: Reticuline oxidase.
pdb deposition date 2008-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3d2jA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3d2jA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3d2jA03
1E8HA 3JS8A 4BC7A 2Y4GA 1QLUA 2MBRA 3DQ0A 5FXEA 3TX1A 1W1SA 1N60C 3ETRB 3S1CA 3PQBA 5I1VA 1E0YA 4PWBA 4BC9A 1HSKA 3EUB3 2QKNA 2BVHA 1DIQA 5AWVA 2E3TA 2Y08A 5K8EA 4UD8A 1N5XA 2I0KA 3D2DA 3FWAA 1W1OA 1W1JA 2Q4WA 2W54A 3D2JA 1DZNA 4PWCA 4BBYA 2QPMA 3RJAA 1MBTA 1V97A 1N62C 5FXFA 4JAYA 2VFUA 4EC3A 3B9JB 4ZOHB 1W1LA 3KJMA 3RJ8A 1DIIA 1F0XA 2VFRA 3AM9A 1FFUC 4PYTA 3BW7A 5HMRA 5AE1A 5ADZA 1N5WC 4JB1A 3S1DA 5I1WA 3W8XA 5L6GA 3FW7A 2VAOA 4PVEA 2Y3RA 1JROA 4MLAA 4PZFA 1FO4A 3PM9A 5AE2A 4OALA 2AXRA 1W1MA 1WVFA 1UXYA 1VAOA 1QLTA 5HHZA 5HQXA 4PVJA 2Q85A 3S1EA 3POPA 2BVGA 3TSJA 1WYGA 5L6FA 4DNSA 2W55A 2IPIA 3NS1B 2EXRA 3VTEA 2Y3SA 4O95A 3AMZA 1AHZA 1T3QC 5AE3A 3FW9A 4XLOA 1ZXIC 4ML8A 3HSUA 3W8WA 1MBBA 4BCAA 1FFVC 3NRZB 2GQTA 2GQUA 1E8FA 5FXDA 3I99A 1E8GA 1W1QA 1W1KA 2BVFA 2VFVA 3FW8A 3NVZB 4PVHA 1VDVA 1ZR6A 2WDWA 4PVKA 1I19A 1WVEA 3D2HA 2VFSA 3W8ZA 2W3SA 5D79A 3S1FA 3GSYA 3TSHA 3C0PA 1N63C 1FIQB 3SR6B 1AHVA 3AN1A 2VFTA 2W3RA 1AHUA 1W1RA 5FXPA 1N61C
chains in the Genus database with same CATH superfamily
1E8HA 3JS8A 4BC7A 2UUUA 1QLUA 2Y4GA 2OAIA 3EJDB 2MBRA 3DQ0A 5FXEA 3TX1A 1W1SA 1N60C 3ETRB 3S1CA 3PQBA 5I1VA 1E0YA 4PWBA 4BC9A 1HSKA 3EUB3 2QKNA 2BVHA 1DIQA 5AWVA 2E3TA 2Y08A 5K8EA 4UD8A 2P3HA 1N5XA 2PLSA 2I0KA 3D2DA 3FWAA 1W1OA 1W1JA 2Q4WA 2W54A 3D2JA 2YVSA 1DZNA 4PWCA 4BBYA 2QPMA 3RJAA 1MBTA 1V97A 1N62C 5FXFA 4JAYA 2P4PA 2VFUA 4EC3A 3B9JB 4ZOHB 1W1LA 1JRPA 3KJMA 3RJ8A 1DIIA 1F0XA 2VFRA 2R8DA 3LLBA 3AM9A 1FFUC 4PYTA 3BW7A 5HMRA 5AE1A 5ADZA 1N5WC 4JB1A 3S1DA 5I1WA 3W8XA 5L6GA 3FW7A 2VAOA 4PVEA 2Y3RA 1JROA 4MLAA 4PZFA 1FO4A 3PM9A 2NQWA 5AE2A 3EJEB 3NVWB 3HRDC 4OALA 2AXRA 1W1MA 1WVFA 1UXYA 1VAOA 1QLTA 5HHZA 5HQXA 4PVJA 2Q85A 2PLIA 1SB3B 3S1EA 4HG0A 3POPA 2BVGA 3TSJA 1WYGA 5L6FA 4DNSA 2W55A 2IPIA 3NS1B 2EXRA 3VTEA 2UUVA 2Y3SA 3NVYB 4O95A 3AMZA 1AHZA 1T3QC 5AE3A 3FW9A 4XLOA 3EJBB 1ZXIC 4ML8A 3HSUA 3W8WA 2P13A 1MBBA 4BCAA 1FFVC 5G5GB 3NRZB 2GQTA 2GQUA 1E8FA 2RK5A 5FXDA 3I99A 1E8GA 1W1QA 1W1KA 2BVFA 2VFVA 3FW8A 3NVZB 4PVHA 3NVVB 1VDVA 1ZR6A 2WDWA 4PVKA 1I19A 1WVEA 3D2HA 2VFSA 3W8ZA 2W3SA 5D79A 3S1FA 3GSYA 3TSHA 2R2ZA 3C0PA 1N63C 1FIQB 2O3GA 3LAEA 5G5HB 3SR6B 1AHVA 3DEDA 3AN1A 1RM6B 2VFTA 2W3RA 1AHUA 1W1RA 5FXPA 1N61C
chains in the Genus database with same CATH topology
1E8HA 3JS8A 4BC7A 2UUUA 1QLUA 2Y4GA 2OAIA 2MBRA 3DQ0A 5FXEA 3TX1A 1W1SA 1N60C 3ETRB 3S1CA 3PQBA 5I1VA 1E0YA 4PWBA 4BC9A 1HSKA 3EUB3 2QKNA 2BVHA 1DIQA 5AWVA 2E3TA 2Y08A 5K8EA 4UD8A 2P3HA 1N5XA 2PLSA 2I0KA 3D2DA 3FWAA 1W1OA 1W1JA 2Q4WA 2W54A 3D2JA 2YVSA 1DZNA 4PWCA 4BBYA 2QPMA 3RJAA 1MBTA 1V97A 1N62C 5FXFA 4JAYA 2P4PA 2VFUA 4EC3A 3B9JB 4ZOHB 1W1LA 1JRPA 3KJMA 3RJ8A 1DIIA 1F0XA 2VFRA 2R8DA 3LLBA 3AM9A 1FFUC 4PYTA 3BW7A 5HMRA 5AE1A 5ADZA 1N5WC 4JB1A 3S1DA 5I1WA 3W8XA 5L6GA 3FW7A 2VAOA 4PVEA 2Y3RA 1JROA 4MLAA 4PZFA 1FO4A 3PM9A 2NQWA 5AE2A 3NVWB 3HRDC 4OALA 2AXRA 1W1MA 1WVFA 1UXYA 1VAOA 1QLTA 5HHZA 5HQXA 4PVJA 2Q85A 2PLIA 1SB3B 3S1EA 4HG0A 3POPA 2BVGA 3TSJA 1WYGA 5L6FA 4DNSA 2W55A 2IPIA 3NS1B 2EXRA 3VTEA 2UUVA 2Y3SA 3NVYB 4O95A 3AMZA 1AHZA 1T3QC 5AE3A 3FW9A 4XLOA 1ZXIC 4ML8A 3HSUA 3W8WA 2P13A 1MBBA 4BCAA 1FFVC 5G5GB 3NRZB 2GQTA 2GQUA 1E8FA 2RK5A 5FXDA 3I99A 1E8GA 1W1QA 1W1KA 2BVFA 2VFVA 3FW8A 3NVZB 4PVHA 3NVVB 1VDVA 1ZR6A 2WDWA 4PVKA 1I19A 1WVEA 3D2HA 2VFSA 3W8ZA 2W3SA 5D79A 3S1FA 3GSYA 3TSHA 2R2ZA 3C0PA 1N63C 1FIQB 2O3GA 3LAEA 5G5HB 3SR6B 1AHVA 3DEDA 3AN1A 1RM6B 2VFTA 2W3RA 1AHUA 1W1RA 5FXPA 1N61C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E8H A;  3JS8 A;  4BC7 A;  2Y4G A;  1QLU A;  2MBR A;  3DQ0 A;  5FXE A;  3TX1 A;  1W1S A;  1N60 C;  3ETR B;  3S1C A;  3PQB A;  5I1V A;  1E0Y A;  4PWB A;  4BC9 A;  1HSK A;  3EUB 3;  2QKN A;  2BVH A;  1DIQ A;  5AWV A;  2E3T A;  2Y08 A;  5K8E A;  4UD8 A;  1N5X A;  2I0K A;  3D2D A;  3FWA A;  1W1O A;  1W1J A;  2Q4W A;  2W54 A;  3D2J A;  1DZN A;  4PWC A;  4BBY A;  2QPM A;  3RJA A;  1MBT A;  1V97 A;  1N62 C;  5FXF A;  4JAY A;  2VFU A;  4EC3 A;  3B9J B;  4ZOH B;  1W1L A;  3KJM A;  3RJ8 A;  1DII A;  1F0X A;  2VFR A;  3AM9 A;  1FFU C;  4PYT A;  3BW7 A;  5HMR A;  5AE1 A;  5ADZ A;  1N5W C;  4JB1 A;  3S1D A;  5I1W A;  3W8X A;  5L6G A;  3FW7 A;  2VAO A;  4PVE A;  2Y3R A;  1JRO A;  4MLA A;  4PZF A;  1FO4 A;  3PM9 A;  5AE2 A;  4OAL A;  2AXR A;  1W1M A;  1WVF A;  1UXY A;  1VAO A;  1QLT A;  5HHZ A;  5HQX A;  4PVJ A;  2Q85 A;  3S1E A;  3POP A;  2BVG A;  3TSJ A;  1WYG A;  5L6F A;  4DNS A;  2W55 A;  2IPI A;  3NS1 B;  2EXR A;  3VTE A;  2Y3S A;  4O95 A;  3AMZ A;  1AHZ A;  1T3Q C;  5AE3 A;  3FW9 A;  4XLO A;  1ZXI C;  4ML8 A;  3HSU A;  3W8W A;  1MBB A;  4BCA A;  1FFV C;  3NRZ B;  2GQT A;  2GQU A;  1E8F A;  5FXD A;  3I99 A;  1E8G A;  1W1Q A;  1W1K A;  2BVF A;  2VFV A;  3FW8 A;  3NVZ B;  4PVH A;  1VDV A;  1ZR6 A;  2WDW A;  4PVK A;  1I19 A;  1WVE A;  3D2H A;  2VFS A;  3W8Z A;  2W3S A;  5D79 A;  3S1F A;  3GSY A;  3TSH A;  3C0P A;  1N63 C;  1FIQ B;  3SR6 B;  1AHV A;  3AN1 A;  2VFT A;  2W3R A;  1AHU A;  1W1R A;  5FXP A;  1N61 C; 
#chains in the Genus database with same CATH topology
 1E8H A;  3JS8 A;  4BC7 A;  2UUU A;  1QLU A;  2Y4G A;  2OAI A;  3EJD B;  2MBR A;  3DQ0 A;  5FXE A;  3TX1 A;  1W1S A;  1N60 C;  3ETR B;  3S1C A;  3PQB A;  5I1V A;  1E0Y A;  4PWB A;  4BC9 A;  1HSK A;  3EUB 3;  2QKN A;  2BVH A;  1DIQ A;  5AWV A;  2E3T A;  2Y08 A;  5K8E A;  4UD8 A;  2P3H A;  1N5X A;  2PLS A;  2I0K A;  3D2D A;  3FWA A;  1W1O A;  1W1J A;  2Q4W A;  2W54 A;  3D2J A;  2YVS A;  1DZN A;  4PWC A;  4BBY A;  2QPM A;  3RJA A;  1MBT A;  1V97 A;  1N62 C;  5FXF A;  4JAY A;  2P4P A;  2VFU A;  4EC3 A;  3B9J B;  4ZOH B;  1W1L A;  1JRP A;  3KJM A;  3RJ8 A;  1DII A;  1F0X A;  2VFR A;  2R8D A;  3LLB A;  3AM9 A;  1FFU C;  4PYT A;  3BW7 A;  5HMR A;  5AE1 A;  5ADZ A;  1N5W C;  4JB1 A;  3S1D A;  5I1W A;  3W8X A;  5L6G A;  3FW7 A;  2VAO A;  4PVE A;  2Y3R A;  1JRO A;  4MLA A;  4PZF A;  1FO4 A;  3PM9 A;  2NQW A;  5AE2 A;  3EJE B;  3NVW B;  3HRD C;  4OAL A;  2AXR A;  1W1M A;  1WVF A;  1UXY A;  1VAO A;  1QLT A;  5HHZ A;  5HQX A;  4PVJ A;  2Q85 A;  2PLI A;  1SB3 B;  3S1E A;  4HG0 A;  3POP A;  2BVG A;  3TSJ A;  1WYG A;  5L6F A;  4DNS A;  2W55 A;  2IPI A;  3NS1 B;  2EXR A;  3VTE A;  2UUV A;  2Y3S A;  3NVY B;  4O95 A;  3AMZ A;  1AHZ A;  1T3Q C;  5AE3 A;  3FW9 A;  4XLO A;  3EJB B;  1ZXI C;  4ML8 A;  3HSU A;  3W8W A;  2P13 A;  1MBB A;  4BCA A;  1FFV C;  5G5G B;  3NRZ B;  2GQT A;  2GQU A;  1E8F A;  2RK5 A;  5FXD A;  3I99 A;  1E8G A;  1W1Q A;  1W1K A;  2BVF A;  2VFV A;  3FW8 A;  3NVZ B;  4PVH A;  3NVV B;  1VDV A;  1ZR6 A;  2WDW A;  4PVK A;  1I19 A;  1WVE A;  3D2H A;  2VFS A;  3W8Z A;  2W3S A;  5D79 A;  3S1F A;  3GSY A;  3TSH A;  2R2Z A;  3C0P A;  1N63 C;  1FIQ B;  2O3G A;  3LAE A;  5G5H B;  3SR6 B;  1AHV A;  3DED A;  3AN1 A;  1RM6 B;  2VFT A;  2W3R A;  1AHU A;  1W1R A;  5FXP A;  1N61 C; 
#chains in the Genus database with same CATH homology
 1E8H A;  3JS8 A;  4BC7 A;  2UUU A;  1QLU A;  2Y4G A;  2OAI A;  2MBR A;  3DQ0 A;  5FXE A;  3TX1 A;  1W1S A;  1N60 C;  3ETR B;  3S1C A;  3PQB A;  5I1V A;  1E0Y A;  4PWB A;  4BC9 A;  1HSK A;  3EUB 3;  2QKN A;  2BVH A;  1DIQ A;  5AWV A;  2E3T A;  2Y08 A;  5K8E A;  4UD8 A;  2P3H A;  1N5X A;  2PLS A;  2I0K A;  3D2D A;  3FWA A;  1W1O A;  1W1J A;  2Q4W A;  2W54 A;  3D2J A;  2YVS A;  1DZN A;  4PWC A;  4BBY A;  2QPM A;  3RJA A;  1MBT A;  1V97 A;  1N62 C;  5FXF A;  4JAY A;  2P4P A;  2VFU A;  4EC3 A;  3B9J B;  4ZOH B;  1W1L A;  1JRP A;  3KJM A;  3RJ8 A;  1DII A;  1F0X A;  2VFR A;  2R8D A;  3LLB A;  3AM9 A;  1FFU C;  4PYT A;  3BW7 A;  5HMR A;  5AE1 A;  5ADZ A;  1N5W C;  4JB1 A;  3S1D A;  5I1W A;  3W8X A;  5L6G A;  3FW7 A;  2VAO A;  4PVE A;  2Y3R A;  1JRO A;  4MLA A;  4PZF A;  1FO4 A;  3PM9 A;  2NQW A;  5AE2 A;  3NVW B;  3HRD C;  4OAL A;  2AXR A;  1W1M A;  1WVF A;  1UXY A;  1VAO A;  1QLT A;  5HHZ A;  5HQX A;  4PVJ A;  2Q85 A;  2PLI A;  1SB3 B;  3S1E A;  4HG0 A;  3POP A;  2BVG A;  3TSJ A;  1WYG A;  5L6F A;  4DNS A;  2W55 A;  2IPI A;  3NS1 B;  2EXR A;  3VTE A;  2UUV A;  2Y3S A;  3NVY B;  4O95 A;  3AMZ A;  1AHZ A;  1T3Q C;  5AE3 A;  3FW9 A;  4XLO A;  1ZXI C;  4ML8 A;  3HSU A;  3W8W A;  2P13 A;  1MBB A;  4BCA A;  1FFV C;  5G5G B;  3NRZ B;  2GQT A;  2GQU A;  1E8F A;  2RK5 A;  5FXD A;  3I99 A;  1E8G A;  1W1Q A;  1W1K A;  2BVF A;  2VFV A;  3FW8 A;  3NVZ B;  4PVH A;  3NVV B;  1VDV A;  1ZR6 A;  2WDW A;  4PVK A;  1I19 A;  1WVE A;  3D2H A;  2VFS A;  3W8Z A;  2W3S A;  5D79 A;  3S1F A;  3GSY A;  3TSH A;  2R2Z A;  3C0P A;  1N63 C;  1FIQ B;  2O3G A;  3LAE A;  5G5H B;  3SR6 B;  1AHV A;  3DED A;  3AN1 A;  1RM6 B;  2VFT A;  2W3R A;  1AHU A;  1W1R A;  5FXP A;  1N61 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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