3D3CA

Structural and functional analysis of the e. coli nusb-s10 transcription antitermination complex.
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
138
structure length
138
Chain Sequence
EPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords N utilization substance protein B
publication title Structural and functional analysis of the E. coli NusB-S10 transcription antitermination complex.
pubmed doi rcsb
source organism Escherichia coli
total genus 50
structure length 138
sequence length 138
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01029 NusB NusB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.940.10 Mainly Alpha Orthogonal Bundle N-utilizing Substance Protein B Homolog; Chain A NusB-like 3d3cA00
3D3BA 1Q8CA 4EYAA 2JR0A 3R2CA 1SQGA 1TZTA 1TZUA 1EY1A 3IMQA 1TZVA 2YXLA 1TZXA 5LM7B 1SQFA 1EYVA 3D3CA 1TZWA 3R2DA
chains in the Genus database with same CATH superfamily
3D3BA 1Q8CA 4EYAA 2JR0A 3R2CA 1SQGA 1TZTA 1TZUA 1EY1A 3IMQA 1TZVA 2YXLA 1TZXA 5LM7B 1SQFA 1EYVA 3D3CA 1TZWA 3R2DA
chains in the Genus database with same CATH topology
3D3BA 1Q8CA 4EYAA 2JR0A 3R2CA 1SQGA 1TZTA 1TZUA 1EY1A 3IMQA 1TZVA 2YXLA 1TZXA 5LM7B 1SQFA 1EYVA 3D3CA 1TZWA 3R2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D3B A;  1Q8C A;  4EYA A;  2JR0 A;  3R2C A;  1SQG A;  1TZT A;  1TZU A;  1EY1 A;  3IMQ A;  1TZV A;  2YXL A;  1TZX A;  5LM7 B;  1SQF A;  1EYV A;  3D3C A;  1TZW A;  3R2D A; 
#chains in the Genus database with same CATH topology
 3D3B A;  1Q8C A;  4EYA A;  2JR0 A;  3R2C A;  1SQG A;  1TZT A;  1TZU A;  1EY1 A;  3IMQ A;  1TZV A;  2YXL A;  1TZX A;  5LM7 B;  1SQF A;  1EYV A;  3D3C A;  1TZW A;  3R2D A; 
#chains in the Genus database with same CATH homology
 3D3B A;  1Q8C A;  4EYA A;  2JR0 A;  3R2C A;  1SQG A;  1TZT A;  1TZU A;  1EY1 A;  3IMQ A;  1TZV A;  2YXL A;  1TZX A;  5LM7 B;  1SQF A;  1EYV A;  3D3C A;  1TZW A;  3R2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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