3D4UB

Bovine thrombin-activatable fibrinolysis inhibitor (tafia) in complex with tick-derived carboxypeptidase inhibitor.
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
74
structure length
74
Chain Sequence
NECVSKGFGCLPQSDCPQEARLSYGGCSTVCCDLSKLTGCKGKGGECNPLDRQCKELQAESASCGKGQKCCVWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Carboxypeptidase B2
publication title Structure of activated thrombin-activatable fibrinolysis inhibitor, a molecular link between coagulation and fibrinolysis.
pubmed doi rcsb
source organism Rhipicephalus bursa
total genus 19
structure length 74
sequence length 74
ec nomenclature
pdb deposition date 2008-05-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.20.10 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 3d4uB02
2.20.20.50 Mainly Beta Single Sheet Anthopleurin-A Anthopleurin-A 3d4uB01
1ZLIB 1H5OA 3LMSB 1Z99A 2K2XA 4GV5A 1WQKA 2BDSA 1B8WA 1SHIA 2MUBA 1WXNA 1SH1A 3D4UB 2H9XA 1APFA 2SH1A 1AHLA 2JTOA 1BDSA 1ATXA 1ZUEA 1ZLHB 1ZUFA 2MN3A 1D6BA 2RNGA
chains in the Genus database with same CATH superfamily
3KEZA 1ZLIB 1H5OA 3LMSB 2K2XA 4GV5A 2IKDA 2XXLA 3IF4A 1GL9B 2QSGA 1WQKA 1ZHHB 2BDSA 2JR3A 2QSHA 1SHIA 1B8WA 3C38A 2MUBA 3MYVA 1SH1A 1WXNA 4YIRA 3D4UB 2H9XA 1EL6A 3MCXA 2DLAA 2IKEA 2HJEA 1APFA 2QSFA 1GKUB 2SH1A 1AHLA 2JTOA 2RNGA 1BDSA 3C30A 1ATXA 1ZUEA 1ZLHB 1ZUFA 2MN3A 1D6BA 2HJ9C 1Z99A 2B9KA
chains in the Genus database with same CATH topology
3KEZA 1ZLIB 1H5OA 3LMSB 2K2XA 4GV5A 2IKDA 2XXLA 2QSGA 1WQKA 1ZHHB 2BDSA 2JR3A 2QSHA 1SHIA 1B8WA 3C38A 2MUBA 3MYVA 1WXNA 1SH1A 4YIRA 3D4UB 2H9XA 3MCXA 2DLAA 2IKEA 2HJEA 1APFA 2QSFA 2SH1A 1AHLA 2JTOA 2RNGA 1BDSA 3C30A 1ATXA 1ZUEA 1ZLHB 1ZUFA 2MN3A 1D6BA 2HJ9C 1Z99A 2B9KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZLI B;  1H5O A;  3LMS B;  1Z99 A;  2K2X A;  4GV5 A;  1WQK A;  2BDS A;  1B8W A;  1SHI A;  2MUB A;  1WXN A;  1SH1 A;  3D4U B;  2H9X A;  1APF A;  2SH1 A;  1AHL A;  2JTO A;  1BDS A;  1ATX A;  1ZUE A;  1ZLH B;  1ZUF A;  2MN3 A;  1D6B A;  2RNG A; 
#chains in the Genus database with same CATH topology
 3KEZ A;  1ZLI B;  1H5O A;  3LMS B;  2K2X A;  4GV5 A;  2IKD A;  2XXL A;  3IF4 A;  1GL9 B;  2QSG A;  1WQK A;  1ZHH B;  2BDS A;  2JR3 A;  2QSH A;  1SHI A;  1B8W A;  3C38 A;  2MUB A;  3MYV A;  1SH1 A;  1WXN A;  4YIR A;  3D4U B;  2H9X A;  1EL6 A;  3MCX A;  2DLA A;  2IKE A;  2HJE A;  1APF A;  2QSF A;  1GKU B;  2SH1 A;  1AHL A;  2JTO A;  2RNG A;  1BDS A;  3C30 A;  1ATX A;  1ZUE A;  1ZLH B;  1ZUF A;  2MN3 A;  1D6B A;  2HJ9 C;  1Z99 A;  2B9K A; 
#chains in the Genus database with same CATH homology
 3KEZ A;  1ZLI B;  1H5O A;  3LMS B;  2K2X A;  4GV5 A;  2IKD A;  2XXL A;  2QSG A;  1WQK A;  1ZHH B;  2BDS A;  2JR3 A;  2QSH A;  1SHI A;  1B8W A;  3C38 A;  2MUB A;  3MYV A;  1WXN A;  1SH1 A;  4YIR A;  3D4U B;  2H9X A;  3MCX A;  2DLA A;  2IKE A;  2HJE A;  1APF A;  2QSF A;  2SH1 A;  1AHL A;  2JTO A;  2RNG A;  1BDS A;  3C30 A;  1ATX A;  1ZUE A;  1ZLH B;  1ZUF A;  2MN3 A;  1D6B A;  2HJ9 C;  1Z99 A;  2B9K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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