3D61A

Crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (abnbd147a) complexed to arabinobiose
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
314
structure length
314
Chain Sequence
VHFHPFGNVNFYEMDWSLKGDLWAHDPVIAKEGSRWYVFHTGSGIQIKTSEDGVHWENMGWVFPSLPDWYKQYVPEKDEDHLWAPDICFYNGIYYLYYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIAPNVVFDQEGQPWLSFGSFWSGIQLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVCRNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVDKNGVSMMQGGGTILDEGNDRWIGPGHCAVYFSGVSAILVNHAYDALKNGEPTLQIRPLYWDDEGWPYLSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Intracellular arabinanase
publication title Crystal structure of an inverting GH 43 1,5-alpha-L-arabinanase from Geobacillus stearothermophilus complexed with its substrate
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 74
structure length 314
sequence length 314
ec nomenclature ec 3.2.1.99: Arabinan endo-1,5-alpha-L-arabinosidase.
pdb deposition date 2008-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 3d61A00
3WPYA 4UDKE 4N1IA 1UV4A 3AKFA 3KSTA 1Y9MA 3C7EA 4O8OA 1PT2A 5FK8A 3QC2A 4FFFA 5JOZA 3R4ZA 2QQUA 2XQRA 3PIGA 3KF5A 1ST8A 4U6BA 4N4BA 4UDGA 3SC7X 5GLOA 4AK6A 3VSRA 2X8FA 3P2NA 3VT2A 3LF7A 5JOYA 3QZ4A 3QEDA 3VSFA 4FFGA 4KCAA 5AY9A 3D5YA 1YRZA 2AC1A 4PVIA 3WMZA 5FKCA 3K1UA 3AKIA 3D60A 5B6SA 4KC7A 4NOVA 2YFTA 5GLMA 3WPVA 3OM4A 3D5ZA 5GLLA 2VDTA 3KF3A 3U14A 4COTA 1WL7A 3LEMA 4UDKA 5GLKA 3OM7A 4PVAA 5JOXA 5GLQA 3UGFA 3C7HA 5AYEA 3U75A 2OXBA 2QQVA 5AYCA 1VKDA 1GYDB 2AEYA 2EXHA 3LIGA 1Y9GA 3LIHA 5A7VA 3WATA 4FFHA 4N2RA 3UGGA 5GLRA 1Y4WA 4U6DA 3BYKA 3TAWA 5A8DA 3PIJA 4KC8A 3WPUA 2AEZA 4O8NA 4MLGA 2ADEA 5GLNA 5FKBA 5FIXA 2EXJA 3RWKX 3VSZA 1YI7A 3OM6A 3LDKA 3WASA 5ANNA 4AK5A 1UYPA 5B6TA 3WPZA 5GLPA 5A7VB 2ADDA 3AKGA 4FFIA 3WN1A 5JOWA 3BYLA 3C7FA 3LDRA 3QEFA 5FMCA 1Y7BA 3C7GA 2QQWA 5FMBA 4KCBA 3UGHA 3C7OA 3WMYA 3VSSA 5FK7A 3WN0A 3ZXKA 2X8TA 3OM2A 4N2ZA 4O8PA 3WN2A 4ONZA 3VT0A 4UDJA 4D47A 5C0PA 1W2TA 2YFRA 5FLWA 2EXKA 3R67A 1W18A 3QEEA 2X8SA 5FMDA 3ZXLA 5A8CA 3C2UA 3LFIA 3BYNA 2YFSA 3D61A 4UDIA 3VT1A 5AYDA 3BYJA 3NQHA 3WAUA 2B4WA 2EXIA 3R4YA 4QQSA 1GYHA 1OYGA 3ZXJA 4EQVA 1YIFA 4KMIA 3OM5A 3CU9A 4AK7A 3LV4A 1GYEB 3AKHA
chains in the Genus database with same CATH superfamily
3WPYA 4UDKE 4N1IA 1UV4A 3AKFA 3KSTA 1Y9MA 3C7EA 1TL2A 1PT2A 4O8OA 3QC2A 4FFFA 5FK8A 5JOZA 3R4ZA 2QQUA 2XQRA 3PIGA 3KF5A 1ST8A 4U6BA 4N4BA 4UDGA 3SC7X 5GLOA 4AK6A 3VSRA 2X8FA 3P2NA 3VT2A 3LF7A 5JOYA 3QZ4A 3QEDA 3VSFA 4FFGA 4KCAA 5AY9A 3D5YA 1YRZA 2AC1A 4PVIA 3WMZA 5FKCA 3K1UA 3AKIA 3D60A 5C2MA 5B6SA 4KC7A 4NOVA 2YFTA 5GLMA 3WPVA 3OM4A 3D5ZA 5GLLA 2VDTA 3KF3A 3U14A 4COTA 1WL7A 3LEMA 4UDKA 5GLKA 3OM7A 4PVAA 5JOXA 5GLQA 3UGFA 3C7HA 5AYEA 3U75A 2OXBA 2QQVA 5AYCA 1VKDA 1GYDB 2AEYA 2EXHA 3LIGA 1Y9GA 3LIHA 5A7VA 3WATA 4FFHA 4N2RA 3UGGA 5GLRA 1Y4WA 4U6DA 3BYKA 3TAWA 5A8DA 3PIJA 4KC8A 3WPUA 2AEZA 4O8NA 4MLGA 2ADEA 5GLNA 5FKBA 5FIXA 2EXJA 3RWKX 3VSZA 1YI7A 3OM6A 3LDKA 3WASA 5ANNA 4AK5A 1UYPA 5B6TA 3WPZA 5GLPA 5A7VB 2ADDA 3AKGA 4FFIA 3WN1A 5JOWA 3BYLA 3C7FA 3LDRA 3QEFA 5FMCA 1Y7BA 3C7GA 2QQWA 5FMBA 4KCBA 3UGHA 3C7OA 3WMYA 3VSSA 5FK7A 3WN0A 3ZXKA 2X8TA 3OM2A 4N2ZA 4O8PA 3WN2A 4ONZA 3VT0A 4UDJA 4D47A 5C0PA 1W2TA 2YFRA 5FLWA 2EXKA 3R67A 1W18A 3QEEA 2X8SA 5FMDA 3ZXLA 5A8CA 3C2UA 3LFIA 3BYNA 2YFSA 3D61A 4UDIA 3VT1A 5AYDA 3BYJA 3NQHA 3WAUA 2B4WA 2EXIA 3R4YA 4QQSA 1GYHA 1OYGA 3ZXJA 4EQVA 1YIFA 4KMIA 3OM5A 3CU9A 4AK7A 3LV4A 1GYEB 3AKHA
chains in the Genus database with same CATH topology
3WPYA 4UDKE 4N1IA 1UV4A 3AKFA 3KSTA 1Y9MA 3C7EA 4O8OA 1PT2A 5FK8A 3QC2A 4FFFA 5JOZA 3R4ZA 2QQUA 2XQRA 3PIGA 3KF5A 1ST8A 4U6BA 4N4BA 4UDGA 3SC7X 5GLOA 4AK6A 3VSRA 2X8FA 3P2NA 3VT2A 3LF7A 5JOYA 3QZ4A 3QEDA 3VSFA 4FFGA 4KCAA 5AY9A 3D5YA 1YRZA 2AC1A 4PVIA 3WMZA 5FKCA 3K1UA 3AKIA 3D60A 5B6SA 4KC7A 4NOVA 2YFTA 5GLMA 3WPVA 3OM4A 3D5ZA 5GLLA 2VDTA 3KF3A 3U14A 4COTA 1WL7A 3LEMA 4UDKA 5GLKA 3OM7A 4PVAA 5JOXA 5GLQA 3UGFA 3C7HA 5AYEA 3U75A 2OXBA 2QQVA 5AYCA 1VKDA 1GYDB 2AEYA 2EXHA 3LIGA 1Y9GA 3LIHA 5A7VA 3WATA 4FFHA 4N2RA 3UGGA 5GLRA 1Y4WA 4U6DA 3BYKA 3TAWA 5A8DA 3PIJA 4KC8A 3WPUA 2AEZA 4O8NA 4MLGA 2ADEA 5GLNA 5FKBA 5FIXA 2EXJA 3RWKX 3VSZA 1YI7A 3OM6A 3LDKA 3WASA 5ANNA 4AK5A 1UYPA 5B6TA 3WPZA 5GLPA 5A7VB 2ADDA 3AKGA 4FFIA 3WN1A 5JOWA 3BYLA 3C7FA 3LDRA 3QEFA 5FMCA 1Y7BA 3C7GA 2QQWA 5FMBA 4KCBA 3UGHA 3C7OA 3WMYA 3VSSA 5FK7A 3WN0A 3ZXKA 2X8TA 3OM2A 4N2ZA 4O8PA 3WN2A 4ONZA 3VT0A 4UDJA 4D47A 5C0PA 1W2TA 2YFRA 5FLWA 2EXKA 3R67A 1W18A 3QEEA 2X8SA 5FMDA 3ZXLA 5A8CA 3C2UA 3LFIA 3BYNA 2YFSA 3D61A 4UDIA 3VT1A 5AYDA 3BYJA 3NQHA 3WAUA 2B4WA 2EXIA 3R4YA 4QQSA 1GYHA 1OYGA 3ZXJA 4EQVA 1YIFA 4KMIA 3OM5A 3CU9A 4AK7A 3LV4A 1GYEB 3AKHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WPY A;  4UDK E;  4N1I A;  1UV4 A;  3AKF A;  3KST A;  1Y9M A;  3C7E A;  4O8O A;  1PT2 A;  5FK8 A;  3QC2 A;  4FFF A;  5JOZ A;  3R4Z A;  2QQU A;  2XQR A;  3PIG A;  3KF5 A;  1ST8 A;  4U6B A;  4N4B A;  4UDG A;  3SC7 X;  5GLO A;  4AK6 A;  3VSR A;  2X8F A;  3P2N A;  3VT2 A;  3LF7 A;  5JOY A;  3QZ4 A;  3QED A;  3VSF A;  4FFG A;  4KCA A;  5AY9 A;  3D5Y A;  1YRZ A;  2AC1 A;  4PVI A;  3WMZ A;  5FKC A;  3K1U A;  3AKI A;  3D60 A;  5B6S A;  4KC7 A;  4NOV A;  2YFT A;  5GLM A;  3WPV A;  3OM4 A;  3D5Z A;  5GLL A;  2VDT A;  3KF3 A;  3U14 A;  4COT A;  1WL7 A;  3LEM A;  4UDK A;  5GLK A;  3OM7 A;  4PVA A;  5JOX A;  5GLQ A;  3UGF A;  3C7H A;  5AYE A;  3U75 A;  2OXB A;  2QQV A;  5AYC A;  1VKD A;  1GYD B;  2AEY A;  2EXH A;  3LIG A;  1Y9G A;  3LIH A;  5A7V A;  3WAT A;  4FFH A;  4N2R A;  3UGG A;  5GLR A;  1Y4W A;  4U6D A;  3BYK A;  3TAW A;  5A8D A;  3PIJ A;  4KC8 A;  3WPU A;  2AEZ A;  4O8N A;  4MLG A;  2ADE A;  5GLN A;  5FKB A;  5FIX A;  2EXJ A;  3RWK X;  3VSZ A;  1YI7 A;  3OM6 A;  3LDK A;  3WAS A;  5ANN A;  4AK5 A;  1UYP A;  5B6T A;  3WPZ A;  5GLP A;  5A7V B;  2ADD A;  3AKG A;  4FFI A;  3WN1 A;  5JOW A;  3BYL A;  3C7F A;  3LDR A;  3QEF A;  5FMC A;  1Y7B A;  3C7G A;  2QQW A;  5FMB A;  4KCB A;  3UGH A;  3C7O A;  3WMY A;  3VSS A;  5FK7 A;  3WN0 A;  3ZXK A;  2X8T A;  3OM2 A;  4N2Z A;  4O8P A;  3WN2 A;  4ONZ A;  3VT0 A;  4UDJ A;  4D47 A;  5C0P A;  1W2T A;  2YFR A;  5FLW A;  2EXK A;  3R67 A;  1W18 A;  3QEE A;  2X8S A;  5FMD A;  3ZXL A;  5A8C A;  3C2U A;  3LFI A;  3BYN A;  2YFS A;  3D61 A;  4UDI A;  3VT1 A;  5AYD A;  3BYJ A;  3NQH A;  3WAU A;  2B4W A;  2EXI A;  3R4Y A;  4QQS A;  1GYH A;  1OYG A;  3ZXJ A;  4EQV A;  1YIF A;  4KMI A;  3OM5 A;  3CU9 A;  4AK7 A;  3LV4 A;  1GYE B;  3AKH A; 
#chains in the Genus database with same CATH topology
 3WPY A;  4UDK E;  4N1I A;  1UV4 A;  3AKF A;  3KST A;  1Y9M A;  3C7E A;  1TL2 A;  1PT2 A;  4O8O A;  3QC2 A;  4FFF A;  5FK8 A;  5JOZ A;  3R4Z A;  2QQU A;  2XQR A;  3PIG A;  3KF5 A;  1ST8 A;  4U6B A;  4N4B A;  4UDG A;  3SC7 X;  5GLO A;  4AK6 A;  3VSR A;  2X8F A;  3P2N A;  3VT2 A;  3LF7 A;  5JOY A;  3QZ4 A;  3QED A;  3VSF A;  4FFG A;  4KCA A;  5AY9 A;  3D5Y A;  1YRZ A;  2AC1 A;  4PVI A;  3WMZ A;  5FKC A;  3K1U A;  3AKI A;  3D60 A;  5C2M A;  5B6S A;  4KC7 A;  4NOV A;  2YFT A;  5GLM A;  3WPV A;  3OM4 A;  3D5Z A;  5GLL A;  2VDT A;  3KF3 A;  3U14 A;  4COT A;  1WL7 A;  3LEM A;  4UDK A;  5GLK A;  3OM7 A;  4PVA A;  5JOX A;  5GLQ A;  3UGF A;  3C7H A;  5AYE A;  3U75 A;  2OXB A;  2QQV A;  5AYC A;  1VKD A;  1GYD B;  2AEY A;  2EXH A;  3LIG A;  1Y9G A;  3LIH A;  5A7V A;  3WAT A;  4FFH A;  4N2R A;  3UGG A;  5GLR A;  1Y4W A;  4U6D A;  3BYK A;  3TAW A;  5A8D A;  3PIJ A;  4KC8 A;  3WPU A;  2AEZ A;  4O8N A;  4MLG A;  2ADE A;  5GLN A;  5FKB A;  5FIX A;  2EXJ A;  3RWK X;  3VSZ A;  1YI7 A;  3OM6 A;  3LDK A;  3WAS A;  5ANN A;  4AK5 A;  1UYP A;  5B6T A;  3WPZ A;  5GLP A;  5A7V B;  2ADD A;  3AKG A;  4FFI A;  3WN1 A;  5JOW A;  3BYL A;  3C7F A;  3LDR A;  3QEF A;  5FMC A;  1Y7B A;  3C7G A;  2QQW A;  5FMB A;  4KCB A;  3UGH A;  3C7O A;  3WMY A;  3VSS A;  5FK7 A;  3WN0 A;  3ZXK A;  2X8T A;  3OM2 A;  4N2Z A;  4O8P A;  3WN2 A;  4ONZ A;  3VT0 A;  4UDJ A;  4D47 A;  5C0P A;  1W2T A;  2YFR A;  5FLW A;  2EXK A;  3R67 A;  1W18 A;  3QEE A;  2X8S A;  5FMD A;  3ZXL A;  5A8C A;  3C2U A;  3LFI A;  3BYN A;  2YFS A;  3D61 A;  4UDI A;  3VT1 A;  5AYD A;  3BYJ A;  3NQH A;  3WAU A;  2B4W A;  2EXI A;  3R4Y A;  4QQS A;  1GYH A;  1OYG A;  3ZXJ A;  4EQV A;  1YIF A;  4KMI A;  3OM5 A;  3CU9 A;  4AK7 A;  3LV4 A;  1GYE B;  3AKH A; 
#chains in the Genus database with same CATH homology
 3WPY A;  4UDK E;  4N1I A;  1UV4 A;  3AKF A;  3KST A;  1Y9M A;  3C7E A;  4O8O A;  1PT2 A;  5FK8 A;  3QC2 A;  4FFF A;  5JOZ A;  3R4Z A;  2QQU A;  2XQR A;  3PIG A;  3KF5 A;  1ST8 A;  4U6B A;  4N4B A;  4UDG A;  3SC7 X;  5GLO A;  4AK6 A;  3VSR A;  2X8F A;  3P2N A;  3VT2 A;  3LF7 A;  5JOY A;  3QZ4 A;  3QED A;  3VSF A;  4FFG A;  4KCA A;  5AY9 A;  3D5Y A;  1YRZ A;  2AC1 A;  4PVI A;  3WMZ A;  5FKC A;  3K1U A;  3AKI A;  3D60 A;  5B6S A;  4KC7 A;  4NOV A;  2YFT A;  5GLM A;  3WPV A;  3OM4 A;  3D5Z A;  5GLL A;  2VDT A;  3KF3 A;  3U14 A;  4COT A;  1WL7 A;  3LEM A;  4UDK A;  5GLK A;  3OM7 A;  4PVA A;  5JOX A;  5GLQ A;  3UGF A;  3C7H A;  5AYE A;  3U75 A;  2OXB A;  2QQV A;  5AYC A;  1VKD A;  1GYD B;  2AEY A;  2EXH A;  3LIG A;  1Y9G A;  3LIH A;  5A7V A;  3WAT A;  4FFH A;  4N2R A;  3UGG A;  5GLR A;  1Y4W A;  4U6D A;  3BYK A;  3TAW A;  5A8D A;  3PIJ A;  4KC8 A;  3WPU A;  2AEZ A;  4O8N A;  4MLG A;  2ADE A;  5GLN A;  5FKB A;  5FIX A;  2EXJ A;  3RWK X;  3VSZ A;  1YI7 A;  3OM6 A;  3LDK A;  3WAS A;  5ANN A;  4AK5 A;  1UYP A;  5B6T A;  3WPZ A;  5GLP A;  5A7V B;  2ADD A;  3AKG A;  4FFI A;  3WN1 A;  5JOW A;  3BYL A;  3C7F A;  3LDR A;  3QEF A;  5FMC A;  1Y7B A;  3C7G A;  2QQW A;  5FMB A;  4KCB A;  3UGH A;  3C7O A;  3WMY A;  3VSS A;  5FK7 A;  3WN0 A;  3ZXK A;  2X8T A;  3OM2 A;  4N2Z A;  4O8P A;  3WN2 A;  4ONZ A;  3VT0 A;  4UDJ A;  4D47 A;  5C0P A;  1W2T A;  2YFR A;  5FLW A;  2EXK A;  3R67 A;  1W18 A;  3QEE A;  2X8S A;  5FMD A;  3ZXL A;  5A8C A;  3C2U A;  3LFI A;  3BYN A;  2YFS A;  3D61 A;  4UDI A;  3VT1 A;  5AYD A;  3BYJ A;  3NQH A;  3WAU A;  2B4W A;  2EXI A;  3R4Y A;  4QQS A;  1GYH A;  1OYG A;  3ZXJ A;  4EQV A;  1YIF A;  4KMI A;  3OM5 A;  3CU9 A;  4AK7 A;  3LV4 A;  1GYE B;  3AKH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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