3DB5A

Crystal structure of methyltransferase domain of human pr domain-containing protein 4
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
138
structure length
124
Chain Sequence
PVTFVPDTPIESRARLSLPKQLVLRQSIEVGVWTGETIPVRTCFGPLIGQQSHVNHIWKIYHNGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords PR domain zinc finger protein 4
publication title The crystal structure of methyltransferase domain of human PR domain-containing protein 4.
rcsb
source organism Homo sapiens
total genus 22
structure length 124
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-05-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3db5A00
3DB5A 4J8OA 4J7FA 5CCLA 4QEPA 3EP0A 3RJWA 3IHXA 1MT6A 3BO5A 3QWPA 2JV0A 3SWCA 5EX0A 4H12A 3KMJA 3RU0A 2F69A 3QWVA 1PEGA 4MI0A 5ARGA 5KJMA 3K5KA 4QENA 3N71A 1N6AA 4E47A 3HNAA 4YNDA 3RIBA 3OXLA 4QEOA 3TG5A 3MO5A 3CBMA 1ML9A 4MI5A 2BQZA 3M53A 4FMUA 3M5AA 5AYFA 4I51A 4JDSA 5JINA 5TEGA 2R3AA 1ZKKA 3MO2A 5CPRB 5F5EA 4YPEA 3VUZA 3OS5A 5T0KA 3M56A 5F59A 3KMTA 4J7IA 1MUFA 4YPAA 3VV0A 1N6CA 5T5GA 3OXGA 4O30A 5JHNA 5TTFA 4NJ5A 1O9SA 3MEKA 2W5ZA 5LSXA 1N3JA 1H3IA 2W5YA 3F9YA 2G46A 5T0MA 5LSZA 5KJKA 3F9ZA 3M59A 3S7DA 5JIYA 4J83A 4BUPA 3CBPA 4YNPA 4YPUA 5ARFA 3MO0A 5EG2A 3M54A 3CBOA 5JJ0A 3QWWA 4NVQA 4AU7A 1XQHA 5CCMA 3KMAA 3RQ4A 3S7FA 4YNMA 3S7BA 5F6KC 4O6FA 3RAYA 5KJNA 3S8PA 4IJDA 3FPDA 2IGQA 4RZ0A 1MVXA 5HQ8A 5KJLA 4WUYA 5HI7A 2O8JA 3DALA 4Z4PA 3M55A 3M58A 4JLGA 5F6LA 5EX3A 3PDNA 4LDGA 3OXFA 3SW9A 3S7JA 3F9WA 5TH7A 3M57A 2QPWA 4IJ8A 4C1QA 3TG4A 3F9XA 3OPEA 1MVHA 2RFIA 3OOIA
chains in the Genus database with same CATH superfamily
3DB5A 4J8OA 4J7FA 5CCLA 4QEPA 3EP0A 3RJWA 3IHXA 1MT6A 3BO5A 3QWPA 2JV0A 3SWCA 5EX0A 4H12A 3KMJA 3RU0A 2F69A 3QWVA 1PEGA 4MI0A 5ARGA 5KJMA 3K5KA 4QENA 3N71A 1N6AA 4E47A 3HNAA 4YNDA 3RIBA 3OXLA 4QEOA 3TG5A 3MO5A 3CBMA 1ML9A 4MI5A 2BQZA 3M53A 4FMUA 3M5AA 5AYFA 4I51A 4JDSA 5JINA 5TEGA 2R3AA 1ZKKA 3MO2A 5CPRB 5F5EA 4YPEA 3VUZA 3OS5A 5T0KA 3M56A 5F59A 3KMTA 4J7IA 1MUFA 4YPAA 3VV0A 1N6CA 5T5GA 3OXGA 4O30A 5JHNA 5TTFA 4NJ5A 1O9SA 3MEKA 2W5ZA 5LSXA 1N3JA 1H3IA 2W5YA 3F9YA 2G46A 5T0MA 5LSZA 5KJKA 3F9ZA 3M59A 3S7DA 5JIYA 4J83A 4BUPA 3CBPA 4YNPA 4YPUA 5ARFA 3MO0A 5EG2A 3M54A 3CBOA 5JJ0A 3QWWA 4NVQA 4AU7A 1XQHA 5CCMA 3KMAA 3RQ4A 3S7FA 4YNMA 3S7BA 5F6KC 4O6FA 3RAYA 5KJNA 3S8PA 4IJDA 3FPDA 2IGQA 4RZ0A 1MVXA 5HQ8A 5KJLA 4WUYA 5HI7A 2O8JA 3DALA 4Z4PA 3M55A 3M58A 4JLGA 5F6LA 5EX3A 3PDNA 4LDGA 3OXFA 3SW9A 3S7JA 3F9WA 5TH7A 3M57A 2QPWA 4IJ8A 4C1QA 3TG4A 3F9XA 3OPEA 1MVHA 2RFIA 3OOIA
chains in the Genus database with same CATH topology
3DB5A 4J8OA 4J7FA 5CCLA 4QEPA 3EP0A 3RJWA 3IHXA 1MT6A 3BO5A 3QWPA 2JV0A 3SWCA 5EX0A 4H12A 3KMJA 3RU0A 2F69A 3QWVA 1PEGA 4MI0A 5ARGA 5KJMA 3K5KA 4QENA 3N71A 1N6AA 4E47A 3HNAA 4YNDA 3RIBA 3OXLA 4QEOA 3TG5A 3MO5A 3CBMA 1ML9A 4MI5A 2BQZA 3M53A 4FMUA 3M5AA 5AYFA 4I51A 4JDSA 5JINA 5TEGA 2R3AA 1ZKKA 3MO2A 5CPRB 5F5EA 4YPEA 3VUZA 3OS5A 5T0KA 3M56A 5F59A 3KMTA 4J7IA 1MUFA 4YPAA 3VV0A 1N6CA 5T5GA 3OXGA 4O30A 5JHNA 5TTFA 4NJ5A 1O9SA 3MEKA 2W5ZA 5LSXA 1N3JA 1H3IA 2W5YA 3F9YA 2G46A 5T0MA 5LSZA 5KJKA 3F9ZA 3M59A 3S7DA 5JIYA 4J83A 4BUPA 3CBPA 4YNPA 4YPUA 5ARFA 3MO0A 5EG2A 3M54A 3CBOA 5JJ0A 3QWWA 4NVQA 4AU7A 1XQHA 5CCMA 3KMAA 3RQ4A 3S7FA 4YNMA 3S7BA 5F6KC 4O6FA 3RAYA 5KJNA 3S8PA 4IJDA 3FPDA 2IGQA 4RZ0A 1MVXA 5HQ8A 5KJLA 4WUYA 5HI7A 2O8JA 3DALA 4Z4PA 3M55A 3M58A 4JLGA 5F6LA 5EX3A 3PDNA 4LDGA 3OXFA 3SW9A 3S7JA 3F9WA 5TH7A 3M57A 2QPWA 4IJ8A 4C1QA 3TG4A 3F9XA 3OPEA 1MVHA 2RFIA 3OOIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DB5 A;  4J8O A;  4J7F A;  5CCL A;  4QEP A;  3EP0 A;  3RJW A;  3IHX A;  1MT6 A;  3BO5 A;  3QWP A;  2JV0 A;  3SWC A;  5EX0 A;  4H12 A;  3KMJ A;  3RU0 A;  2F69 A;  3QWV A;  1PEG A;  4MI0 A;  5ARG A;  5KJM A;  3K5K A;  4QEN A;  3N71 A;  1N6A A;  4E47 A;  3HNA A;  4YND A;  3RIB A;  3OXL A;  4QEO A;  3TG5 A;  3MO5 A;  3CBM A;  1ML9 A;  4MI5 A;  2BQZ A;  3M53 A;  4FMU A;  3M5A A;  5AYF A;  4I51 A;  4JDS A;  5JIN A;  5TEG A;  2R3A A;  1ZKK A;  3MO2 A;  5CPR B;  5F5E A;  4YPE A;  3VUZ A;  3OS5 A;  5T0K A;  3M56 A;  5F59 A;  3KMT A;  4J7I A;  1MUF A;  4YPA A;  3VV0 A;  1N6C A;  5T5G A;  3OXG A;  4O30 A;  5JHN A;  5TTF A;  4NJ5 A;  1O9S A;  3MEK A;  2W5Z A;  5LSX A;  1N3J A;  1H3I A;  2W5Y A;  3F9Y A;  2G46 A;  5T0M A;  5LSZ A;  5KJK A;  3F9Z A;  3M59 A;  3S7D A;  5JIY A;  4J83 A;  4BUP A;  3CBP A;  4YNP A;  4YPU A;  5ARF A;  3MO0 A;  5EG2 A;  3M54 A;  3CBO A;  5JJ0 A;  3QWW A;  4NVQ A;  4AU7 A;  1XQH A;  5CCM A;  3KMA A;  3RQ4 A;  3S7F A;  4YNM A;  3S7B A;  5F6K C;  4O6F A;  3RAY A;  5KJN A;  3S8P A;  4IJD A;  3FPD A;  2IGQ A;  4RZ0 A;  1MVX A;  5HQ8 A;  5KJL A;  4WUY A;  5HI7 A;  2O8J A;  3DAL A;  4Z4P A;  3M55 A;  3M58 A;  4JLG A;  5F6L A;  5EX3 A;  3PDN A;  4LDG A;  3OXF A;  3SW9 A;  3S7J A;  3F9W A;  5TH7 A;  3M57 A;  2QPW A;  4IJ8 A;  4C1Q A;  3TG4 A;  3F9X A;  3OPE A;  1MVH A;  2RFI A;  3OOI A; 
#chains in the Genus database with same CATH topology
 3DB5 A;  4J8O A;  4J7F A;  5CCL A;  4QEP A;  3EP0 A;  3RJW A;  3IHX A;  1MT6 A;  3BO5 A;  3QWP A;  2JV0 A;  3SWC A;  5EX0 A;  4H12 A;  3KMJ A;  3RU0 A;  2F69 A;  3QWV A;  1PEG A;  4MI0 A;  5ARG A;  5KJM A;  3K5K A;  4QEN A;  3N71 A;  1N6A A;  4E47 A;  3HNA A;  4YND A;  3RIB A;  3OXL A;  4QEO A;  3TG5 A;  3MO5 A;  3CBM A;  1ML9 A;  4MI5 A;  2BQZ A;  3M53 A;  4FMU A;  3M5A A;  5AYF A;  4I51 A;  4JDS A;  5JIN A;  5TEG A;  2R3A A;  1ZKK A;  3MO2 A;  5CPR B;  5F5E A;  4YPE A;  3VUZ A;  3OS5 A;  5T0K A;  3M56 A;  5F59 A;  3KMT A;  4J7I A;  1MUF A;  4YPA A;  3VV0 A;  1N6C A;  5T5G A;  3OXG A;  4O30 A;  5JHN A;  5TTF A;  4NJ5 A;  1O9S A;  3MEK A;  2W5Z A;  5LSX A;  1N3J A;  1H3I A;  2W5Y A;  3F9Y A;  2G46 A;  5T0M A;  5LSZ A;  5KJK A;  3F9Z A;  3M59 A;  3S7D A;  5JIY A;  4J83 A;  4BUP A;  3CBP A;  4YNP A;  4YPU A;  5ARF A;  3MO0 A;  5EG2 A;  3M54 A;  3CBO A;  5JJ0 A;  3QWW A;  4NVQ A;  4AU7 A;  1XQH A;  5CCM A;  3KMA A;  3RQ4 A;  3S7F A;  4YNM A;  3S7B A;  5F6K C;  4O6F A;  3RAY A;  5KJN A;  3S8P A;  4IJD A;  3FPD A;  2IGQ A;  4RZ0 A;  1MVX A;  5HQ8 A;  5KJL A;  4WUY A;  5HI7 A;  2O8J A;  3DAL A;  4Z4P A;  3M55 A;  3M58 A;  4JLG A;  5F6L A;  5EX3 A;  3PDN A;  4LDG A;  3OXF A;  3SW9 A;  3S7J A;  3F9W A;  5TH7 A;  3M57 A;  2QPW A;  4IJ8 A;  4C1Q A;  3TG4 A;  3F9X A;  3OPE A;  1MVH A;  2RFI A;  3OOI A; 
#chains in the Genus database with same CATH homology
 3DB5 A;  4J8O A;  4J7F A;  5CCL A;  4QEP A;  3EP0 A;  3RJW A;  3IHX A;  1MT6 A;  3BO5 A;  3QWP A;  2JV0 A;  3SWC A;  5EX0 A;  4H12 A;  3KMJ A;  3RU0 A;  2F69 A;  3QWV A;  1PEG A;  4MI0 A;  5ARG A;  5KJM A;  3K5K A;  4QEN A;  3N71 A;  1N6A A;  4E47 A;  3HNA A;  4YND A;  3RIB A;  3OXL A;  4QEO A;  3TG5 A;  3MO5 A;  3CBM A;  1ML9 A;  4MI5 A;  2BQZ A;  3M53 A;  4FMU A;  3M5A A;  5AYF A;  4I51 A;  4JDS A;  5JIN A;  5TEG A;  2R3A A;  1ZKK A;  3MO2 A;  5CPR B;  5F5E A;  4YPE A;  3VUZ A;  3OS5 A;  5T0K A;  3M56 A;  5F59 A;  3KMT A;  4J7I A;  1MUF A;  4YPA A;  3VV0 A;  1N6C A;  5T5G A;  3OXG A;  4O30 A;  5JHN A;  5TTF A;  4NJ5 A;  1O9S A;  3MEK A;  2W5Z A;  5LSX A;  1N3J A;  1H3I A;  2W5Y A;  3F9Y A;  2G46 A;  5T0M A;  5LSZ A;  5KJK A;  3F9Z A;  3M59 A;  3S7D A;  5JIY A;  4J83 A;  4BUP A;  3CBP A;  4YNP A;  4YPU A;  5ARF A;  3MO0 A;  5EG2 A;  3M54 A;  3CBO A;  5JJ0 A;  3QWW A;  4NVQ A;  4AU7 A;  1XQH A;  5CCM A;  3KMA A;  3RQ4 A;  3S7F A;  4YNM A;  3S7B A;  5F6K C;  4O6F A;  3RAY A;  5KJN A;  3S8P A;  4IJD A;  3FPD A;  2IGQ A;  4RZ0 A;  1MVX A;  5HQ8 A;  5KJL A;  4WUY A;  5HI7 A;  2O8J A;  3DAL A;  4Z4P A;  3M55 A;  3M58 A;  4JLG A;  5F6L A;  5EX3 A;  3PDN A;  4LDG A;  3OXF A;  3SW9 A;  3S7J A;  3F9W A;  5TH7 A;  3M57 A;  2QPW A;  4IJ8 A;  4C1Q A;  3TG4 A;  3F9X A;  3OPE A;  1MVH A;  2RFI A;  3OOI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...