3DDEA

Crystal structure of a domain of unknown function with a heme oxygenase-like fold (sden_3740) from shewanella denitrificans os217 at 2.30 a resolution
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
232
structure length
232
Chain Sequence
SIIDLTKLEQKVATMWDSILTNSPFIHEVLDGKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDREDVLSSKPLPATETLIAYLYWISATGNPVQRLGYSYWAENVYGYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords TENA/THI-4 protein, Domain of Unknown Function with a Heme O
publication title Crystal structure of Domain of Unknown Function with a Heme Oxygenase-like Fold (YP_564736.1) from SHEWANELLA DENITRIFICANS OS-217 at 2.30 A resolution
rcsb
source organism Shewanella denitrificans os217
total genus 79
structure length 232
sequence length 232
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14518 Haem_oxygenas_2 Iron-containing redox enzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3ddeA00
4WD4A 3TGMA 1IW1A 1WNVA 1VGIA 1WOVA 1WOWA 4GOHA 1OYKA 4FN6A 1TO9A 1WZFA 1IRMA 3B5PA 1N3UA 2F2GA 1OZEA 4GPFA 1OTWA 1ULXA 1RCWA 4G98A 4WWJA 1YAFA 4G7UA 1T5PA 1XK0A 4GPHA 1P3UA 1WWMA 2GM8A 1SK7A 3K4FA 4MECA 2DY5A 2Z68A 1RTWA 1WZDA 2E7EA 1XK2A 1XK1A 4G7PA 1IW0A 1TWRA 4G99A 4G7TA 3IBXA 2ZVUA 1WZGA 4WX0A 4WMHA 2QCXA 1XJZA 1V8XA 1XK3A 3NO6A 1S13A 5BTQA 1TYHA 1OZLA 1YAKA 2A6BA 3MOOA 1DVGA 3HMLA 3HOKA 1S8CA 1Z72A 4G8WA 1OYLA 4G8UA 1IX3A 4RAJA 4G8PA 2QZCA 1IX4A 1J02A 3I9UA 1WNWA 3OQLA 1OZRA 2A2OA 1WNXA 3MVUA 3RM5A 1DVEA 3DDEA 1P3VA 1OTVA 1UDDA 2RD3A 1N45A 4NY7A 2QPPA 1IVJA 1WOXA 4WWZA 1UBBA 1TO9B 3CZYA 1TWNA 1P3TA 1NI6A 3HLXA 1OZWA 4GPCA 4LQXA 2Q32A 2RGZA 3B5OA 3HNHA 3I8RA 4G7LA 3BJDA 1J2CA 1J77A 2GM7A 3I9TA 2A2MA 1WE1A 2Q4XA
chains in the Genus database with same CATH superfamily
4WD4A 3TGMA 1IW1A 1WNVA 1VGIA 1WOVA 1WOWA 4GOHA 1OYKA 4FN6A 1TO9A 1WZFA 1IRMA 3B5PA 1N3UA 2F2GA 1OZEA 4GPFA 1OTWA 1ULXA 1RCWA 4G98A 4WWJA 1YAFA 4G7UA 1T5PA 1XK0A 4GPHA 1P3UA 1WWMA 2GM8A 1SK7A 3K4FA 4MECA 2DY5A 2Z68A 1RTWA 1WZDA 2E7EA 1XK2A 1XK1A 4G7PA 1IW0A 1TWRA 4G99A 4G7TA 3IBXA 2ZVUA 1WZGA 4WX0A 4WMHA 2QCXA 1XJZA 1V8XA 1XK3A 3NO6A 1S13A 5BTQA 1TYHA 1OZLA 1YAKA 2A6BA 3MOOA 1DVGA 3HMLA 3HOKA 1S8CA 1Z72A 4G8WA 1OYLA 4G8UA 1IX3A 4RAJA 4G8PA 2QZCA 1IX4A 1J02A 3I9UA 1WNWA 3OQLA 1OZRA 2A2OA 1WNXA 3MVUA 3RM5A 1DVEA 3DDEA 1P3VA 1OTVA 2RD3A 1UDDA 1N45A 4NY7A 2QPPA 1IVJA 1WOXA 4WWZA 1UBBA 1TO9B 3CZYA 1TWNA 1P3TA 1NI6A 3HLXA 1OZWA 4GPCA 4LQXA 2Q32A 2RGZA 3B5OA 2LCUA 3HNHA 3I8RA 4G7LA 3BJDA 1J2CA 1J77A 2GM7A 3I9TA 2A2MA 1WE1A 2Q4XA
chains in the Genus database with same CATH topology
4WD4A 3TGMA 1IW1A 1WNVA 1VGIA 1WOVA 1WOWA 4GOHA 1OYKA 4FN6A 1TO9A 1WZFA 1IRMA 3B5PA 1N3UA 2F2GA 1OZEA 4GPFA 1OTWA 1ULXA 1RCWA 4G98A 4WWJA 1YAFA 4G7UA 1T5PA 1XK0A 4GPHA 1P3UA 1WWMA 2GM8A 1SK7A 3K4FA 4MECA 2DY5A 2Z68A 1RTWA 1WZDA 2E7EA 1XK2A 1XK1A 4G7PA 1IW0A 1TWRA 4G99A 4G7TA 3IBXA 2ZVUA 1WZGA 4WX0A 4WMHA 2QCXA 1XJZA 1V8XA 1XK3A 3NO6A 1S13A 5BTQA 1TYHA 1OZLA 1YAKA 2A6BA 3MOOA 1DVGA 3HMLA 3HOKA 1S8CA 1Z72A 4G8WA 1OYLA 4G8UA 1IX3A 4RAJA 4G8PA 2QZCA 1IX4A 1J02A 3I9UA 1WNWA 3OQLA 1OZRA 2A2OA 1WNXA 3MVUA 3RM5A 1DVEA 3DDEA 1P3VA 1OTVA 1UDDA 2RD3A 1N45A 4NY7A 2QPPA 1IVJA 1WOXA 4WWZA 1UBBA 1TO9B 3CZYA 1TWNA 1P3TA 1NI6A 3HLXA 1OZWA 4GPCA 4LQXA 2Q32A 2RGZA 3B5OA 3HNHA 3I8RA 4G7LA 3BJDA 1J2CA 1J77A 2GM7A 3I9TA 2A2MA 1WE1A 2Q4XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WD4 A;  3TGM A;  1IW1 A;  1WNV A;  1VGI A;  1WOV A;  1WOW A;  4GOH A;  1OYK A;  4FN6 A;  1TO9 A;  1WZF A;  1IRM A;  3B5P A;  1N3U A;  2F2G A;  1OZE A;  4GPF A;  1OTW A;  1ULX A;  1RCW A;  4G98 A;  4WWJ A;  1YAF A;  4G7U A;  1T5P A;  1XK0 A;  4GPH A;  1P3U A;  1WWM A;  2GM8 A;  1SK7 A;  3K4F A;  4MEC A;  2DY5 A;  2Z68 A;  1RTW A;  1WZD A;  2E7E A;  1XK2 A;  1XK1 A;  4G7P A;  1IW0 A;  1TWR A;  4G99 A;  4G7T A;  3IBX A;  2ZVU A;  1WZG A;  4WX0 A;  4WMH A;  2QCX A;  1XJZ A;  1V8X A;  1XK3 A;  3NO6 A;  1S13 A;  5BTQ A;  1TYH A;  1OZL A;  1YAK A;  2A6B A;  3MOO A;  1DVG A;  3HML A;  3HOK A;  1S8C A;  1Z72 A;  4G8W A;  1OYL A;  4G8U A;  1IX3 A;  4RAJ A;  4G8P A;  2QZC A;  1IX4 A;  1J02 A;  3I9U A;  1WNW A;  3OQL A;  1OZR A;  2A2O A;  1WNX A;  3MVU A;  3RM5 A;  1DVE A;  3DDE A;  1P3V A;  1OTV A;  1UDD A;  2RD3 A;  1N45 A;  4NY7 A;  2QPP A;  1IVJ A;  1WOX A;  4WWZ A;  1UBB A;  1TO9 B;  3CZY A;  1TWN A;  1P3T A;  1NI6 A;  3HLX A;  1OZW A;  4GPC A;  4LQX A;  2Q32 A;  2RGZ A;  3B5O A;  3HNH A;  3I8R A;  4G7L A;  3BJD A;  1J2C A;  1J77 A;  2GM7 A;  3I9T A;  2A2M A;  1WE1 A;  2Q4X A; 
#chains in the Genus database with same CATH topology
 4WD4 A;  3TGM A;  1IW1 A;  1WNV A;  1VGI A;  1WOV A;  1WOW A;  4GOH A;  1OYK A;  4FN6 A;  1TO9 A;  1WZF A;  1IRM A;  3B5P A;  1N3U A;  2F2G A;  1OZE A;  4GPF A;  1OTW A;  1ULX A;  1RCW A;  4G98 A;  4WWJ A;  1YAF A;  4G7U A;  1T5P A;  1XK0 A;  4GPH A;  1P3U A;  1WWM A;  2GM8 A;  1SK7 A;  3K4F A;  4MEC A;  2DY5 A;  2Z68 A;  1RTW A;  1WZD A;  2E7E A;  1XK2 A;  1XK1 A;  4G7P A;  1IW0 A;  1TWR A;  4G99 A;  4G7T A;  3IBX A;  2ZVU A;  1WZG A;  4WX0 A;  4WMH A;  2QCX A;  1XJZ A;  1V8X A;  1XK3 A;  3NO6 A;  1S13 A;  5BTQ A;  1TYH A;  1OZL A;  1YAK A;  2A6B A;  3MOO A;  1DVG A;  3HML A;  3HOK A;  1S8C A;  1Z72 A;  4G8W A;  1OYL A;  4G8U A;  1IX3 A;  4RAJ A;  4G8P A;  2QZC A;  1IX4 A;  1J02 A;  3I9U A;  1WNW A;  3OQL A;  1OZR A;  2A2O A;  1WNX A;  3MVU A;  3RM5 A;  1DVE A;  3DDE A;  1P3V A;  1OTV A;  2RD3 A;  1UDD A;  1N45 A;  4NY7 A;  2QPP A;  1IVJ A;  1WOX A;  4WWZ A;  1UBB A;  1TO9 B;  3CZY A;  1TWN A;  1P3T A;  1NI6 A;  3HLX A;  1OZW A;  4GPC A;  4LQX A;  2Q32 A;  2RGZ A;  3B5O A;  2LCU A;  3HNH A;  3I8R A;  4G7L A;  3BJD A;  1J2C A;  1J77 A;  2GM7 A;  3I9T A;  2A2M A;  1WE1 A;  2Q4X A; 
#chains in the Genus database with same CATH homology
 4WD4 A;  3TGM A;  1IW1 A;  1WNV A;  1VGI A;  1WOV A;  1WOW A;  4GOH A;  1OYK A;  4FN6 A;  1TO9 A;  1WZF A;  1IRM A;  3B5P A;  1N3U A;  2F2G A;  1OZE A;  4GPF A;  1OTW A;  1ULX A;  1RCW A;  4G98 A;  4WWJ A;  1YAF A;  4G7U A;  1T5P A;  1XK0 A;  4GPH A;  1P3U A;  1WWM A;  2GM8 A;  1SK7 A;  3K4F A;  4MEC A;  2DY5 A;  2Z68 A;  1RTW A;  1WZD A;  2E7E A;  1XK2 A;  1XK1 A;  4G7P A;  1IW0 A;  1TWR A;  4G99 A;  4G7T A;  3IBX A;  2ZVU A;  1WZG A;  4WX0 A;  4WMH A;  2QCX A;  1XJZ A;  1V8X A;  1XK3 A;  3NO6 A;  1S13 A;  5BTQ A;  1TYH A;  1OZL A;  1YAK A;  2A6B A;  3MOO A;  1DVG A;  3HML A;  3HOK A;  1S8C A;  1Z72 A;  4G8W A;  1OYL A;  4G8U A;  1IX3 A;  4RAJ A;  4G8P A;  2QZC A;  1IX4 A;  1J02 A;  3I9U A;  1WNW A;  3OQL A;  1OZR A;  2A2O A;  1WNX A;  3MVU A;  3RM5 A;  1DVE A;  3DDE A;  1P3V A;  1OTV A;  1UDD A;  2RD3 A;  1N45 A;  4NY7 A;  2QPP A;  1IVJ A;  1WOX A;  4WWZ A;  1UBB A;  1TO9 B;  3CZY A;  1TWN A;  1P3T A;  1NI6 A;  3HLX A;  1OZW A;  4GPC A;  4LQX A;  2Q32 A;  2RGZ A;  3B5O A;  3HNH A;  3I8R A;  4G7L A;  3BJD A;  1J2C A;  1J77 A;  2GM7 A;  3I9T A;  2A2M A;  1WE1 A;  2Q4X A; 
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