3DEDA

C-terminal domain of probable hemolysin from chromobacterium violaceum
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
87
structure length
87
Chain Sequence
DEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDRTRVDKILVQRHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords Probable hemolysin
publication title Crystal structure of C-terminal domain of Probable hemolysin from Chromobacterium violaceum
rcsb
source organism Chromobacterium violaceum
total genus 18
structure length 87
sequence length 87
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2008-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3dedA00
4OALA 2O3GA 1F0XA 2VFSA 1N5XA 3JS8A 3ETRB 3NS1B 4XLOA 5AE3A 1RM6B 2W3SA 4MLAA 4HG0A 2P3HA 1T3QC 1W1KA 1W1JA 3AMZA 3S1FA 4BC9A 1W1OA 2NQWA 3EUB3 2RK5A 1E8FA 1N5WC 1WVEA 5FXEA 3AM9A 2BVHA 2R8DA 2BVFA 2W54A 3NRZB 1N63C 1WVFA 1VAOA 1MBBA 3NVYB 1N60C 1E8GA 2VFRA 5FXFA 2VFVA 4O95A 2VAOA 3NVVB 1JROA 3HRDC 1QLUA 2GQUA 2Q85A 1UXYA 2YVSA 1N62C 2MBRA 3S1EA 2GQTA 3DEDA 1AHUA 2BVGA 5FXDA 4BCAA 4BC7A 3S1DA 3PM9A 1E0YA 2PLSA 4BBYA 1DIIA 1ZXIC 3BW7A 1W1SA 3LAEA 3TX1A 3AN1A 5FXPA 1I19A 1E8HA 4JAYA 1AHZA 5HQXA 5AE2A 1QLTA 3I99A 4ML8A 1DIQA 5HMRA 3S1CA 1WYGA 1SB3B 3KJMA 2AXRA 2P13A 4PYTA 4JB1A 2W55A 2I0KA 1N61C 3B9JB 2Q4WA 2OAIA 2VFUA 1V97A 2EXRA 2P4PA 2PLIA 1FFVC 1FFUC 3W8XA 2VFTA 1W1LA 2QPMA 2W3RA 3W8WA 3DQ0A 1W1MA 3W8ZA 1HSKA 1AHVA 5G5HB 5ADZA 1W1RA 4ZOHB 1FIQB 2QKNA 3SR6B 5AE1A 1DZNA 3LLBA 2R2ZA 1VDVA 1FO4A 3NVZB 1JRPA 5G5GB 3C0PA 1W1QA 1MBTA 3NVWB 5HHZA 1ZR6A 2E3TA
chains in the Genus database with same CATH superfamily
4OALA 2O3GA 1F0XA 2VFSA 5L6FA 3HSUA 1N5XA 5I1VA 3JS8A 3ETRB 3NS1B 4XLOA 5AE3A 1RM6B 2W3SA 4MLAA 4HG0A 2Y08A 2P3HA 3FWAA 1T3QC 1W1KA 1W1JA 3AMZA 3FW8A 3S1FA 4BC9A 4DNSA 1W1OA 2NQWA 3FW7A 3TSHA 3EUB3 2RK5A 1E8FA 1N5WC 1WVEA 3VTEA 5FXEA 3AM9A 3POPA 2BVHA 3D2JA 2R8DA 2BVFA 2W54A 3NRZB 1N63C 4EC3A 2UUUA 1WVFA 3RJ8A 1VAOA 1MBBA 3NVYB 3TSJA 4PVEA 1N60C 1E8GA 2VFRA 2WDWA 5FXFA 2VFVA 3FW9A 4O95A 2VAOA 3NVVB 2UUVA 4PWBA 1JROA 3HRDC 1QLUA 4PWCA 2Q85A 2GQUA 1UXYA 2YVSA 1N62C 2MBRA 3S1EA 2GQTA 3DEDA 1AHUA 2BVGA 5FXDA 4BCAA 4BC7A 3S1DA 3PM9A 1E0YA 2PLSA 4BBYA 1DIIA 4UD8A 1ZXIC 3BW7A 1W1SA 3LAEA 3TX1A 3AN1A 4PVKA 5FXPA 1I19A 1E8HA 5AWVA 4JAYA 1AHZA 3D2DA 5HQXA 5I1WA 5AE2A 1QLTA 3I99A 4PVJA 4ML8A 1DIQA 5HMRA 3S1CA 1WYGA 1SB3B 3KJMA 2AXRA 3GSYA 2Y4GA 2P13A 4PYTA 4JB1A 2W55A 5L6GA 2I0KA 1N61C 3B9JB 2Q4WA 2Y3RA 2OAIA 2VFUA 2Y3SA 1V97A 2EXRA 2P4PA 2PLIA 1FFVC 1FFUC 3W8XA 2VFTA 1W1LA 3D2HA 2QPMA 2W3RA 3W8WA 3DQ0A 1W1MA 3W8ZA 1HSKA 1AHVA 5G5HB 5ADZA 1W1RA 4ZOHB 1FIQB 2QKNA 3PQBA 3SR6B 5AE1A 1DZNA 2IPIA 4PVHA 4PZFA 3LLBA 2R2ZA 1VDVA 1FO4A 3NVZB 5D79A 5K8EA 1JRPA 5G5GB 3C0PA 1W1QA 1MBTA 3NVWB 5HHZA 1ZR6A 2E3TA 3RJAA
chains in the Genus database with same CATH topology
4OALA 2O3GA 1F0XA 2VFSA 5L6FA 3HSUA 1N5XA 5I1VA 3JS8A 3ETRB 3NS1B 4XLOA 5AE3A 1RM6B 2W3SA 4MLAA 4HG0A 2Y08A 2P3HA 3FWAA 1T3QC 1W1KA 1W1JA 3AMZA 3FW8A 3S1FA 4BC9A 4DNSA 1W1OA 2NQWA 3FW7A 3TSHA 3EUB3 2RK5A 1E8FA 1N5WC 1WVEA 3VTEA 5FXEA 3AM9A 3POPA 2BVHA 3D2JA 2R8DA 2BVFA 2W54A 3NRZB 1N63C 4EC3A 2UUUA 1WVFA 3RJ8A 1VAOA 1MBBA 3NVYB 3TSJA 4PVEA 1N60C 1E8GA 2VFRA 2WDWA 5FXFA 2VFVA 3FW9A 4O95A 2VAOA 3NVVB 2UUVA 4PWBA 1JROA 3HRDC 1QLUA 4PWCA 2Q85A 2GQUA 1UXYA 2YVSA 1N62C 2MBRA 3S1EA 2GQTA 3DEDA 1AHUA 2BVGA 5FXDA 4BCAA 4BC7A 3S1DA 3PM9A 1E0YA 2PLSA 4BBYA 1DIIA 4UD8A 1ZXIC 3BW7A 1W1SA 3LAEA 3TX1A 3AN1A 4PVKA 5FXPA 1I19A 1E8HA 5AWVA 4JAYA 1AHZA 3D2DA 5HQXA 5I1WA 5AE2A 1QLTA 3I99A 4PVJA 4ML8A 1DIQA 5HMRA 3S1CA 1WYGA 1SB3B 3KJMA 2AXRA 3GSYA 2Y4GA 2P13A 4PYTA 4JB1A 2W55A 5L6GA 2I0KA 1N61C 3B9JB 2Q4WA 2Y3RA 2OAIA 2VFUA 2Y3SA 1V97A 2EXRA 2P4PA 2PLIA 1FFVC 1FFUC 3W8XA 2VFTA 1W1LA 3D2HA 2QPMA 2W3RA 3W8WA 3DQ0A 1W1MA 3W8ZA 1HSKA 1AHVA 5G5HB 5ADZA 1W1RA 4ZOHB 1FIQB 2QKNA 3PQBA 3SR6B 5AE1A 1DZNA 2IPIA 4PVHA 4PZFA 3LLBA 2R2ZA 1VDVA 1FO4A 3NVZB 5D79A 5K8EA 1JRPA 5G5GB 3C0PA 1W1QA 1MBTA 3NVWB 5HHZA 1ZR6A 2E3TA 3RJAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OAL A;  2O3G A;  1F0X A;  2VFS A;  1N5X A;  3JS8 A;  3ETR B;  3NS1 B;  4XLO A;  5AE3 A;  1RM6 B;  2W3S A;  4MLA A;  4HG0 A;  2P3H A;  1T3Q C;  1W1K A;  1W1J A;  3AMZ A;  3S1F A;  4BC9 A;  1W1O A;  2NQW A;  3EUB 3;  2RK5 A;  1E8F A;  1N5W C;  1WVE A;  5FXE A;  3AM9 A;  2BVH A;  2R8D A;  2BVF A;  2W54 A;  3NRZ B;  1N63 C;  1WVF A;  1VAO A;  1MBB A;  3NVY B;  1N60 C;  1E8G A;  2VFR A;  5FXF A;  2VFV A;  4O95 A;  2VAO A;  3NVV B;  1JRO A;  3HRD C;  1QLU A;  2GQU A;  2Q85 A;  1UXY A;  2YVS A;  1N62 C;  2MBR A;  3S1E A;  2GQT A;  3DED A;  1AHU A;  2BVG A;  5FXD A;  4BCA A;  4BC7 A;  3S1D A;  3PM9 A;  1E0Y A;  2PLS A;  4BBY A;  1DII A;  1ZXI C;  3BW7 A;  1W1S A;  3LAE A;  3TX1 A;  3AN1 A;  5FXP A;  1I19 A;  1E8H A;  4JAY A;  1AHZ A;  5HQX A;  5AE2 A;  1QLT A;  3I99 A;  4ML8 A;  1DIQ A;  5HMR A;  3S1C A;  1WYG A;  1SB3 B;  3KJM A;  2AXR A;  2P13 A;  4PYT A;  4JB1 A;  2W55 A;  2I0K A;  1N61 C;  3B9J B;  2Q4W A;  2OAI A;  2VFU A;  1V97 A;  2EXR A;  2P4P A;  2PLI A;  1FFV C;  1FFU C;  3W8X A;  2VFT A;  1W1L A;  2QPM A;  2W3R A;  3W8W A;  3DQ0 A;  1W1M A;  3W8Z A;  1HSK A;  1AHV A;  5G5H B;  5ADZ A;  1W1R A;  4ZOH B;  1FIQ B;  2QKN A;  3SR6 B;  5AE1 A;  1DZN A;  3LLB A;  2R2Z A;  1VDV A;  1FO4 A;  3NVZ B;  1JRP A;  5G5G B;  3C0P A;  1W1Q A;  1MBT A;  3NVW B;  5HHZ A;  1ZR6 A;  2E3T A; 
#chains in the Genus database with same CATH topology
 4OAL A;  2O3G A;  1F0X A;  2VFS A;  5L6F A;  3HSU A;  1N5X A;  5I1V A;  3JS8 A;  3ETR B;  3NS1 B;  4XLO A;  5AE3 A;  1RM6 B;  2W3S A;  4MLA A;  4HG0 A;  2Y08 A;  2P3H A;  3FWA A;  1T3Q C;  1W1K A;  1W1J A;  3AMZ A;  3FW8 A;  3S1F A;  4BC9 A;  4DNS A;  1W1O A;  2NQW A;  3FW7 A;  3TSH A;  3EUB 3;  2RK5 A;  1E8F A;  1N5W C;  1WVE A;  3VTE A;  5FXE A;  3AM9 A;  3POP A;  2BVH A;  3D2J A;  2R8D A;  2BVF A;  2W54 A;  3NRZ B;  1N63 C;  4EC3 A;  2UUU A;  1WVF A;  3RJ8 A;  1VAO A;  1MBB A;  3NVY B;  3TSJ A;  4PVE A;  1N60 C;  1E8G A;  2VFR A;  2WDW A;  5FXF A;  2VFV A;  3FW9 A;  4O95 A;  2VAO A;  3NVV B;  2UUV A;  4PWB A;  1JRO A;  3HRD C;  1QLU A;  4PWC A;  2Q85 A;  2GQU A;  1UXY A;  2YVS A;  1N62 C;  2MBR A;  3S1E A;  2GQT A;  3DED A;  1AHU A;  2BVG A;  5FXD A;  4BCA A;  4BC7 A;  3S1D A;  3PM9 A;  1E0Y A;  2PLS A;  4BBY A;  1DII A;  4UD8 A;  1ZXI C;  3BW7 A;  1W1S A;  3LAE A;  3TX1 A;  3AN1 A;  4PVK A;  5FXP A;  1I19 A;  1E8H A;  5AWV A;  4JAY A;  1AHZ A;  3D2D A;  5HQX A;  5I1W A;  5AE2 A;  1QLT A;  3I99 A;  4PVJ A;  4ML8 A;  1DIQ A;  5HMR A;  3S1C A;  1WYG A;  1SB3 B;  3KJM A;  2AXR A;  3GSY A;  2Y4G A;  2P13 A;  4PYT A;  4JB1 A;  2W55 A;  5L6G A;  2I0K A;  1N61 C;  3B9J B;  2Q4W A;  2Y3R A;  2OAI A;  2VFU A;  2Y3S A;  1V97 A;  2EXR A;  2P4P A;  2PLI A;  1FFV C;  1FFU C;  3W8X A;  2VFT A;  1W1L A;  3D2H A;  2QPM A;  2W3R A;  3W8W A;  3DQ0 A;  1W1M A;  3W8Z A;  1HSK A;  1AHV A;  5G5H B;  5ADZ A;  1W1R A;  4ZOH B;  1FIQ B;  2QKN A;  3PQB A;  3SR6 B;  5AE1 A;  1DZN A;  2IPI A;  4PVH A;  4PZF A;  3LLB A;  2R2Z A;  1VDV A;  1FO4 A;  3NVZ B;  5D79 A;  5K8E A;  1JRP A;  5G5G B;  3C0P A;  1W1Q A;  1MBT A;  3NVW B;  5HHZ A;  1ZR6 A;  2E3T A;  3RJA A; 
#chains in the Genus database with same CATH homology
 4OAL A;  2O3G A;  1F0X A;  2VFS A;  5L6F A;  3HSU A;  1N5X A;  5I1V A;  3JS8 A;  3ETR B;  3NS1 B;  4XLO A;  5AE3 A;  1RM6 B;  2W3S A;  4MLA A;  4HG0 A;  2Y08 A;  2P3H A;  3FWA A;  1T3Q C;  1W1K A;  1W1J A;  3AMZ A;  3FW8 A;  3S1F A;  4BC9 A;  4DNS A;  1W1O A;  2NQW A;  3FW7 A;  3TSH A;  3EUB 3;  2RK5 A;  1E8F A;  1N5W C;  1WVE A;  3VTE A;  5FXE A;  3AM9 A;  3POP A;  2BVH A;  3D2J A;  2R8D A;  2BVF A;  2W54 A;  3NRZ B;  1N63 C;  4EC3 A;  2UUU A;  1WVF A;  3RJ8 A;  1VAO A;  1MBB A;  3NVY B;  3TSJ A;  4PVE A;  1N60 C;  1E8G A;  2VFR A;  2WDW A;  5FXF A;  2VFV A;  3FW9 A;  4O95 A;  2VAO A;  3NVV B;  2UUV A;  4PWB A;  1JRO A;  3HRD C;  1QLU A;  4PWC A;  2Q85 A;  2GQU A;  1UXY A;  2YVS A;  1N62 C;  2MBR A;  3S1E A;  2GQT A;  3DED A;  1AHU A;  2BVG A;  5FXD A;  4BCA A;  4BC7 A;  3S1D A;  3PM9 A;  1E0Y A;  2PLS A;  4BBY A;  1DII A;  4UD8 A;  1ZXI C;  3BW7 A;  1W1S A;  3LAE A;  3TX1 A;  3AN1 A;  4PVK A;  5FXP A;  1I19 A;  1E8H A;  5AWV A;  4JAY A;  1AHZ A;  3D2D A;  5HQX A;  5I1W A;  5AE2 A;  1QLT A;  3I99 A;  4PVJ A;  4ML8 A;  1DIQ A;  5HMR A;  3S1C A;  1WYG A;  1SB3 B;  3KJM A;  2AXR A;  3GSY A;  2Y4G A;  2P13 A;  4PYT A;  4JB1 A;  2W55 A;  5L6G A;  2I0K A;  1N61 C;  3B9J B;  2Q4W A;  2Y3R A;  2OAI A;  2VFU A;  2Y3S A;  1V97 A;  2EXR A;  2P4P A;  2PLI A;  1FFV C;  1FFU C;  3W8X A;  2VFT A;  1W1L A;  3D2H A;  2QPM A;  2W3R A;  3W8W A;  3DQ0 A;  1W1M A;  3W8Z A;  1HSK A;  1AHV A;  5G5H B;  5ADZ A;  1W1R A;  4ZOH B;  1FIQ B;  2QKN A;  3PQB A;  3SR6 B;  5AE1 A;  1DZN A;  2IPI A;  4PVH A;  4PZF A;  3LLB A;  2R2Z A;  1VDV A;  1FO4 A;  3NVZ B;  5D79 A;  5K8E A;  1JRP A;  5G5G B;  3C0P A;  1W1Q A;  1MBT A;  3NVW B;  5HHZ A;  1ZR6 A;  2E3T A;  3RJA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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