3DJLA

Crystal structure of alkylation response protein e. coli aidb
Total Genus 207
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
207
sequence length
538
structure length
538
Chain Sequence
WQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Protein aidB
publication title Structure and DNA binding of alkylation response protein AidB.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 207
structure length 538
sequence length 538
ec nomenclature
pdb deposition date 2008-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF18158 AidB_N Adaptive response protein AidB N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.110.20 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A; domain 2 3djlA03
3U33A 3DJLA 5EZ3A
chains in the Genus database with same CATH superfamily
4O5MA 2JBSA 3MDDA 4DOYA 4G5EA 1U8VA 5K3HA 3D6BA 3FCJA 3SF6A 1BUCA 2RFQA 2R0MA 1EGCA 3HWCA 4X28C 2ZAFA 2REHA 3OIBA 3X0XA 1W07A 3II9A 3MPIA 1EGEA 4N5FA 3P4TA 3AFEA 4U83A 2IX5A 4M9AA 4IV6A 4ZYJA 2C0UA 5K3GA 4JEKA 2YYGA 4P13A 3GNCA 2EBAA 3NF4A 1IS2A 1SIQA 3D9FA 3X0YA 4L1FA 4HR3A 2A1TA 4ZXVA 1IVHA 1WS9A 2PG0A 1UDYA 2JIFA 1SIRA 2UXWA 1EGDA 2JBRA 2VIGA 3PFDA 2YYMA 3SWOA 2WBIA 2C12A 4IRNA 4KCFA 3D9DA 3EONA 4KTOA 5K3IA 4X28A 2JBTA 2YYLA 3M9VA 3B96A 2DDHA 4RM7A 3D9EA 1UKWA 1JQIA 2IX6A 3GQTA 3MXLA 3MPJA 4NXLA 3MDEA 2CX9A 1R2JA 4XVXA 2R0NA 3AFFA 2FONA 2YYJA 5K3JA 3R7KA 1T9GA 2DVLA 2Z1QA 2YYIA 1RX0A 4W9UA 2YYKA 3EOMA 3MKHA 3OWAA 3U33A 2OR0A 3DJLA 5EZ3A 2D29A 3D9GA
chains in the Genus database with same CATH topology
3U33A 3DJLA 5EZ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U33 A;  3DJL A;  5EZ3 A; 
#chains in the Genus database with same CATH topology
 4O5M A;  2JBS A;  3MDD A;  4DOY A;  4G5E A;  1U8V A;  5K3H A;  3D6B A;  3FCJ A;  3SF6 A;  1BUC A;  2RFQ A;  2R0M A;  1EGC A;  3HWC A;  4X28 C;  2ZAF A;  2REH A;  3OIB A;  3X0X A;  1W07 A;  3II9 A;  3MPI A;  1EGE A;  4N5F A;  3P4T A;  3AFE A;  4U83 A;  2IX5 A;  4M9A A;  4IV6 A;  4ZYJ A;  2C0U A;  5K3G A;  4JEK A;  2YYG A;  4P13 A;  3GNC A;  2EBA A;  3NF4 A;  1IS2 A;  1SIQ A;  3D9F A;  3X0Y A;  4L1F A;  4HR3 A;  2A1T A;  4ZXV A;  1IVH A;  1WS9 A;  2PG0 A;  1UDY A;  2JIF A;  1SIR A;  2UXW A;  1EGD A;  2JBR A;  2VIG A;  3PFD A;  2YYM A;  3SWO A;  2WBI A;  2C12 A;  4IRN A;  4KCF A;  3D9D A;  3EON A;  4KTO A;  5K3I A;  4X28 A;  2JBT A;  2YYL A;  3M9V A;  3B96 A;  2DDH A;  4RM7 A;  3D9E A;  1UKW A;  1JQI A;  2IX6 A;  3GQT A;  3MXL A;  3MPJ A;  4NXL A;  3MDE A;  2CX9 A;  1R2J A;  4XVX A;  2R0N A;  3AFF A;  2FON A;  2YYJ A;  5K3J A;  3R7K A;  1T9G A;  2DVL A;  2Z1Q A;  2YYI A;  1RX0 A;  4W9U A;  2YYK A;  3EOM A;  3MKH A;  3OWA A;  3U33 A;  2OR0 A;  3DJL A;  5EZ3 A;  2D29 A;  3D9G A; 
#chains in the Genus database with same CATH homology
 3U33 A;  3DJL A;  5EZ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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