3DJLA

Crystal structure of alkylation response protein e. coli aidb
Total Genus 207
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
207
sequence length
538
structure length
538
Chain Sequence
WQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Protein aidB
publication title Structure and DNA binding of alkylation response protein AidB.
pubmed doi rcsb
source organism Escherichia coli
total genus 207
structure length 538
sequence length 538
ec nomenclature
pdb deposition date 2008-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF18158 AidB_N Adaptive response protein AidB N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.110.20 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A; domain 2 3djlA03
3U33A 3DJLA 5EZ3A
chains in the Genus database with same CATH superfamily
3D9GA 3MPIA 3MPJA 3II9A 2IX5A 2YYMA 3SWOA 4W9UA 4IV6A 2RFQA 4XVXA 3M9VA 3GQTA 1UKWA 4KCFA 1EGCA 3AFEA 2VIGA 2YYGA 4HR3A 3AFFA 3X0XA 1R2JA 2JBRA 1U8VA 4X28A 2YYIA 4IRNA 4KTOA 3SF6A 4ZYJA 2JBSA 3OIBA 5EZ3A 1WS9A 1SIQA 4O5MA 2C12A 2PG0A 1EGDA 4M9AA 4RM7A 3MDEA 3GNCA 2UXWA 1IS2A 3MDDA 2FONA 2WBIA 2Z1QA 2R0MA 4P13A 4NXLA 1T9GA 3NF4A 2DDHA 2IX6A 3B96A 4X28C 2A1TA 3D9DA 3OWAA 2R0NA 3X0YA 1UDYA 1IVHA 3MKHA 5K3JA 5K3HA 3D9FA 2REHA 4G5EA 2OR0A 3MXLA 3EOMA 1JQIA 1EGEA 2D29A 4JEKA 1W07A 5K3GA 2DVLA 2JIFA 3U33A 3EONA 4U83A 2YYKA 4L1FA 3FCJA 2YYLA 2YYJA 3R7KA 4N5FA 2JBTA 4DOYA 3P4TA 3HWCA 3DJLA 1RX0A 3PFDA 3D9EA 2C0UA 2ZAFA 2EBAA 1SIRA 3D6BA 1BUCA 2CX9A 4ZXVA 5K3IA
chains in the Genus database with same CATH topology
3U33A 3DJLA 5EZ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U33 A;  3DJL A;  5EZ3 A; 
#chains in the Genus database with same CATH topology
 3D9G A;  3MPI A;  3MPJ A;  3II9 A;  2IX5 A;  2YYM A;  3SWO A;  4W9U A;  4IV6 A;  2RFQ A;  4XVX A;  3M9V A;  3GQT A;  1UKW A;  4KCF A;  1EGC A;  3AFE A;  2VIG A;  2YYG A;  4HR3 A;  3AFF A;  3X0X A;  1R2J A;  2JBR A;  1U8V A;  4X28 A;  2YYI A;  4IRN A;  4KTO A;  3SF6 A;  4ZYJ A;  2JBS A;  3OIB A;  5EZ3 A;  1WS9 A;  1SIQ A;  4O5M A;  2C12 A;  2PG0 A;  1EGD A;  4M9A A;  4RM7 A;  3MDE A;  3GNC A;  2UXW A;  1IS2 A;  3MDD A;  2FON A;  2WBI A;  2Z1Q A;  2R0M A;  4P13 A;  4NXL A;  1T9G A;  3NF4 A;  2DDH A;  2IX6 A;  3B96 A;  4X28 C;  2A1T A;  3D9D A;  3OWA A;  2R0N A;  3X0Y A;  1UDY A;  1IVH A;  3MKH A;  5K3J A;  5K3H A;  3D9F A;  2REH A;  4G5E A;  2OR0 A;  3MXL A;  3EOM A;  1JQI A;  1EGE A;  2D29 A;  4JEK A;  1W07 A;  5K3G A;  2DVL A;  2JIF A;  3U33 A;  3EON A;  4U83 A;  2YYK A;  4L1F A;  3FCJ A;  2YYL A;  2YYJ A;  3R7K A;  4N5F A;  2JBT A;  4DOY A;  3P4T A;  3HWC A;  3DJL A;  1RX0 A;  3PFD A;  3D9E A;  2C0U A;  2ZAF A;  2EBA A;  1SIR A;  3D6B A;  1BUC A;  2CX9 A;  4ZXV A;  5K3I A; 
#chains in the Genus database with same CATH homology
 3U33 A;  3DJL A;  5EZ3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...