3DJMA

Crystal structure of a protein of unknown function from duf427 family (rsph17029_0682) from rhodobacter sphaeroides 2.4.1 at 2.51 a resolution
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
113
structure length
113
Chain Sequence
MNNHIRLRKAEGKWVIRTDSAVLGETLNAIELTEGSRDPVIYFPREDVAMVMFDKSEKVTACPLKGEASYYSIVGASGTLKDAAWSYESPKEGLEAIAGYLAFAPDCTKVGQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Uncharacterized Protein DUF427
publication title Crystal structure of Protein of unknown function (DUF427) (YP_001042567.1) from RHODOBACTER SPHAEROIDES ATCC 17029 at 2.51 A resolution
rcsb
source organism Rhodobacter sphaeroides 2.4.1
total genus 19
structure length 113
sequence length 113
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2008-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04248 NTP_transf_9 Domain of unknown function (DUF427)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.40 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 3djmA00
3DJMA
chains in the Genus database with same CATH superfamily
3CEZA 2QFBA 2RQAA 3MAOA 2K8DA 3DJMA 2KV1A 3HCGA 2HR9A 3E0OA 4AY2A 4TZ4C 3WX2A 1H6QA 5F9HA 1HXRA 4V2ZA 5E3HA 2QFDA 3GA3A 3NCUA 3HCIA 3EBMA 3OG8A 4TZUA 1TXJA 4CI2B 3ZD6A 2KZNA 3P3KA 3EQTA 3FACA 4V30A 5F98A 5F9FA 3E0MA 2W4RA 4TZCA 3HCJA 4V2YA 4BPBA 2LVLA 3ZD7A 2FU5A 3CXKA 1YZ1A 4CI3B 2YKGA 2RQBA 4A2XA 3HCHA 2KWBA 1H7YA 4A2VA 4V31A 1FWQA 4CI1B 3WX1A 1L1DA 2RMJA 3LRRA 2LOYA 3LRNA 5AMHA
chains in the Genus database with same CATH topology
2QFBA 2RQAA 3DJMA 2HR9A 4AY2A 1H6QA 5F9HA 1HXRA 5E3HA 2QFDA 3GA3A 3EBMA 3OG8A 1TXJA 3ZD6A 3P3KA 3EQTA 3FACA 5F98A 5F9FA 2W4RA 4BPBA 2LVLA 3ZD7A 2FU5A 2YKGA 1YZ1A 2RQBA 4A2XA 2KWBA 1H7YA 4A2VA 1FWQA 2RMJA 3LRRA 2LOYA 3LRNA 3NCUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DJM A; 
#chains in the Genus database with same CATH topology
 3CEZ A;  2QFB A;  2RQA A;  3MAO A;  2K8D A;  3DJM A;  2KV1 A;  3HCG A;  2HR9 A;  3E0O A;  4AY2 A;  4TZ4 C;  3WX2 A;  1H6Q A;  5F9H A;  1HXR A;  4V2Z A;  5E3H A;  2QFD A;  3GA3 A;  3NCU A;  3HCI A;  3EBM A;  3OG8 A;  4TZU A;  1TXJ A;  4CI2 B;  3ZD6 A;  2KZN A;  3P3K A;  3EQT A;  3FAC A;  4V30 A;  5F98 A;  5F9F A;  3E0M A;  2W4R A;  4TZC A;  3HCJ A;  4V2Y A;  4BPB A;  2LVL A;  3ZD7 A;  2FU5 A;  3CXK A;  1YZ1 A;  4CI3 B;  2YKG A;  2RQB A;  4A2X A;  3HCH A;  2KWB A;  1H7Y A;  4A2V A;  4V31 A;  1FWQ A;  4CI1 B;  3WX1 A;  1L1D A;  2RMJ A;  3LRR A;  2LOY A;  3LRN A;  5AMH A; 
#chains in the Genus database with same CATH homology
 2QFB A;  2RQA A;  3DJM A;  2HR9 A;  4AY2 A;  1H6Q A;  5F9H A;  1HXR A;  5E3H A;  2QFD A;  3GA3 A;  3EBM A;  3OG8 A;  1TXJ A;  3ZD6 A;  3P3K A;  3EQT A;  3FAC A;  5F98 A;  5F9F A;  2W4R A;  4BPB A;  2LVL A;  3ZD7 A;  2FU5 A;  2YKG A;  1YZ1 A;  2RQB A;  4A2X A;  2KWB A;  1H7Y A;  4A2V A;  1FWQ A;  2RMJ A;  3LRR A;  2LOY A;  3LRN A;  3NCU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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