3DLLJ

The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect trna positioning
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords rRNA-23S ribosomal RNA
publication title The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning
pubmed doi rcsb
total genus 15
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2008-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3dllJ01
1YJWH 3CMEH 1YHQH 1YITH 4U67J 1VQ8H 3CC2H 1K8AJ 4WFNJ 1W2BH 3CCSH 5GAHN 1NJIJ 1S72H 5GAGN 3CF5J 4IOAJ 3CC7H 1KD1J 3CC4H 5JVGJ 1M90J 3CCRH 1Q82J 3PIOJ 4UY8M 5DM7J 2QEXH 3I55H 1YJ9H 3CCEH 1M1KJ 3CCJH 1K73J 1VQPH 5GADN 3CCVH 4WFBJ 5GAEN 1VQKH 4IOCJ 1KQSH 3CCLH 3CPWH 1VQ6H 5AN9F 3J7ZM 2OTJH 4WF9J 4IO9J 2PA2A 1VQOH 3CXCH 1Q81J 3CMAH 4WFAJ 1N8RJ 4WCEJ 3DLLJ 3G6EH 5MLCO 1Q86J 3I56H 3G4SH 1K9MJ 1QVFH 3CCUH 5DM6J 5JVHJ 3G71H 3CD6H 1Q7YJ 1YI2H 1VQ4H 5H1SO 1Y69K 3CCQH 1YJNH 1VQ9H 3CCMH 2ZJQJ 1QVGH 2OTLH 1KC8J 2ZJPJ 1VQLH 2ZJRJ 1VQ5H 1YIJH 1VQMH 3PIPJ 1JJ2H 3OW2H 1VQ7H 1VQNH 2QA4H 1WKIA 5HL7J
chains in the Genus database with same CATH superfamily
1YJWH 1FMAE 5AYXA 3CMEH 1QPOA 1YHQH 3EUB4 5HUPA 1YTEA 4U67J 1YITH 1VQ8H 1BRWA 3CC2H 1N60B 3L4PA 2TPTA 2W54B 2E3TA 3C2EA 5MPOC 5AYYA 4WFNJ 2OMDA 1K8AJ 1W2BH 3VMMA 3ETRC 3CCSH 1WYGA 5AYZA 2B7QA 2Q5WE 5HUOA 3B9JC 5GAHN 2W55B 1NJIJ 1S72H 5GAGN 3FAHA 3CF5J 3NRZC 3CC7H 3L0GA 1N61B 5EP8A 1KD1J 4IOAJ 3AMZA 3CC4H 3PAJA 4KWVA 4US9A 3C2OA 5JVGJ 1M90J 1FIQC 3CCRH 1Q82J 2JBMA 3WNZA 3PIOJ 4UY8M 4GA4A 5DM7J 2QEXH 3NS1C 3I55H 2B7PA 4AP8A 1YJ9H 3CCEH 1N5XA 1M1KJ 1O4UA 2W3SB 3CCJH 1SIJA 1K73J 1VLBA 1JROB 3TQVA 4C7YA 1QAPA 1VQPH 3NVZC 5GADN 3H5QA 3CCVH 4YEKA 1N63B 4WFBJ 5GAEN 1VQKH 4IOCJ 1KQSH 3CCLH 3CPWH 2DSJA 1VQ6H 5AN9F 3AM9A 1OTPA 3GNNA 1FFVB 1QPQA 1YTDA 2J0FA 3BIIE 1FO4A 4X46A 3J7ZM 2OTJH 4WF9J 3NVWC 1X1OA 4IO9J 2PA2A 3WO1A 3C2FA 4EADA 1VQOH 4XR5A 3WO0A 3CXCH 1Q81J 3CMAH 4WFAJ 1N8RJ 1NVJA 3SR6C 2WP4A 4WCEJ 4C80A 3DLLJ 3G6EH 1NVIE 1UOUA 1QPRA 2WK5A 5MLCO 1VDVA 4US8A 1Q86J 3I56H 3G4SH 1SB3A 1FM0E 1N62B 1YTKA 3C2VA 1K9MJ 3NVVC 1FFUB 3RPFA 5EY3A 1RM6A 4USAA 1QVFH 4ZOHA 4YYYA 5DM6J 3CCUH 5JVHJ 3C2RA 4EAFA 3G71H 3CD6H 4LHMA 1V97A 1QPNA 1Q7YJ 1YI2H 1VQ4H 4GA6A 5H1SO 1Y69K 3CCQH 1YJNH 1VQ9H 2W3RB 3CCMH 4KWWA 2ZJQJ 1QVGH 2I14A 2OTLH 5HULA 4I9AA 1KC8J 2ZJPJ 4GA5A 1VQLH 2ZJRJ 1VQ5H 1N5WB 2B7NA 1AZYA 1YIJH 1VQMH 3PIPJ 3AN1A 1DGJA 1JJ2H 3OW2H 1ZXIB 1JRPB 2QIEA 1VQ7H 2I1OA 4C7ZA 2WK6A 3NVYC 1VQNH 2QA4H 1WKIA 3FC4A 5HL7J
chains in the Genus database with same CATH topology
1YJWH 3CMEH 1YHQH 1YITH 4U67J 1VQ8H 3CC2H 1K8AJ 4WFNJ 1W2BH 3CCSH 5GAHN 1NJIJ 1S72H 5GAGN 3CF5J 4IOAJ 3CC7H 1KD1J 3CC4H 5JVGJ 1M90J 3CCRH 1Q82J 3PIOJ 4UY8M 5DM7J 2QEXH 3I55H 1YJ9H 3CCEH 1M1KJ 3CCJH 1K73J 1VQPH 5GADN 3CCVH 4WFBJ 5GAEN 1VQKH 4IOCJ 1KQSH 3CCLH 3CPWH 1VQ6H 5AN9F 3J7ZM 2OTJH 4WF9J 4IO9J 2PA2A 1VQOH 3CXCH 1Q81J 3CMAH 4WFAJ 1N8RJ 4WCEJ 3DLLJ 3G6EH 5MLCO 1Q86J 3I56H 3G4SH 1K9MJ 1QVFH 3CCUH 5DM6J 5JVHJ 3G71H 3CD6H 1Q7YJ 1YI2H 1VQ4H 5H1SO 1Y69K 3CCQH 1YJNH 1VQ9H 3CCMH 2ZJQJ 1QVGH 2OTLH 1KC8J 2ZJPJ 1VQLH 2ZJRJ 1VQ5H 1YIJH 1VQMH 3PIPJ 1JJ2H 3OW2H 1VQ7H 1VQNH 2QA4H 1WKIA 5HL7J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YJW H;  3CME H;  1YHQ H;  1YIT H;  4U67 J;  1VQ8 H;  3CC2 H;  1K8A J;  4WFN J;  1W2B H;  3CCS H;  5GAH N;  1NJI J;  1S72 H;  5GAG N;  3CF5 J;  4IOA J;  3CC7 H;  1KD1 J;  3CC4 H;  5JVG J;  1M90 J;  3CCR H;  1Q82 J;  3PIO J;  4UY8 M;  5DM7 J;  2QEX H;  3I55 H;  1YJ9 H;  3CCE H;  1M1K J;  3CCJ H;  1K73 J;  1VQP H;  5GAD N;  3CCV H;  4WFB J;  5GAE N;  1VQK H;  4IOC J;  1KQS H;  3CCL H;  3CPW H;  1VQ6 H;  5AN9 F;  3J7Z M;  2OTJ H;  4WF9 J;  4IO9 J;  2PA2 A;  1VQO H;  3CXC H;  1Q81 J;  3CMA H;  4WFA J;  1N8R J;  4WCE J;  3DLL J;  3G6E H;  5MLC O;  1Q86 J;  3I56 H;  3G4S H;  1K9M J;  1QVF H;  3CCU H;  5DM6 J;  5JVH J;  3G71 H;  3CD6 H;  1Q7Y J;  1YI2 H;  1VQ4 H;  5H1S O;  1Y69 K;  3CCQ H;  1YJN H;  1VQ9 H;  3CCM H;  2ZJQ J;  1QVG H;  2OTL H;  1KC8 J;  2ZJP J;  1VQL H;  2ZJR J;  1VQ5 H;  1YIJ H;  1VQM H;  3PIP J;  1JJ2 H;  3OW2 H;  1VQ7 H;  1VQN H;  2QA4 H;  1WKI A;  5HL7 J; 
#chains in the Genus database with same CATH topology
 1YJW H;  1FMA E;  5AYX A;  3CME H;  1QPO A;  1YHQ H;  3EUB 4;  5HUP A;  1YTE A;  4U67 J;  1YIT H;  1VQ8 H;  1BRW A;  3CC2 H;  1N60 B;  3L4P A;  2TPT A;  2W54 B;  2E3T A;  3C2E A;  5MPO C;  5AYY A;  4WFN J;  2OMD A;  1K8A J;  1W2B H;  3VMM A;  3ETR C;  3CCS H;  1WYG A;  5AYZ A;  2B7Q A;  2Q5W E;  5HUO A;  3B9J C;  5GAH N;  2W55 B;  1NJI J;  1S72 H;  5GAG N;  3FAH A;  3CF5 J;  3NRZ C;  3CC7 H;  3L0G A;  1N61 B;  5EP8 A;  1KD1 J;  4IOA J;  3AMZ A;  3CC4 H;  3PAJ A;  4KWV A;  4US9 A;  3C2O A;  5JVG J;  1M90 J;  1FIQ C;  3CCR H;  1Q82 J;  2JBM A;  3WNZ A;  3PIO J;  4UY8 M;  4GA4 A;  5DM7 J;  2QEX H;  3NS1 C;  3I55 H;  2B7P A;  4AP8 A;  1YJ9 H;  3CCE H;  1N5X A;  1M1K J;  1O4U A;  2W3S B;  3CCJ H;  1SIJ A;  1K73 J;  1VLB A;  1JRO B;  3TQV A;  4C7Y A;  1QAP A;  1VQP H;  3NVZ C;  5GAD N;  3H5Q A;  3CCV H;  4YEK A;  1N63 B;  4WFB J;  5GAE N;  1VQK H;  4IOC J;  1KQS H;  3CCL H;  3CPW H;  2DSJ A;  1VQ6 H;  5AN9 F;  3AM9 A;  1OTP A;  3GNN A;  1FFV B;  1QPQ A;  1YTD A;  2J0F A;  3BII E;  1FO4 A;  4X46 A;  3J7Z M;  2OTJ H;  4WF9 J;  3NVW C;  1X1O A;  4IO9 J;  2PA2 A;  3WO1 A;  3C2F A;  4EAD A;  1VQO H;  4XR5 A;  3WO0 A;  3CXC H;  1Q81 J;  3CMA H;  4WFA J;  1N8R J;  1NVJ A;  3SR6 C;  2WP4 A;  4WCE J;  4C80 A;  3DLL J;  3G6E H;  1NVI E;  1UOU A;  1QPR A;  2WK5 A;  5MLC O;  1VDV A;  4US8 A;  1Q86 J;  3I56 H;  3G4S H;  1SB3 A;  1FM0 E;  1N62 B;  1YTK A;  3C2V A;  1K9M J;  3NVV C;  1FFU B;  3RPF A;  5EY3 A;  1RM6 A;  4USA A;  1QVF H;  4ZOH A;  4YYY A;  5DM6 J;  3CCU H;  5JVH J;  3C2R A;  4EAF A;  3G71 H;  3CD6 H;  4LHM A;  1V97 A;  1QPN A;  1Q7Y J;  1YI2 H;  1VQ4 H;  4GA6 A;  5H1S O;  1Y69 K;  3CCQ H;  1YJN H;  1VQ9 H;  2W3R B;  3CCM H;  4KWW A;  2ZJQ J;  1QVG H;  2I14 A;  2OTL H;  5HUL A;  4I9A A;  1KC8 J;  2ZJP J;  4GA5 A;  1VQL H;  2ZJR J;  1VQ5 H;  1N5W B;  2B7N A;  1AZY A;  1YIJ H;  1VQM H;  3PIP J;  3AN1 A;  1DGJ A;  1JJ2 H;  3OW2 H;  1ZXI B;  1JRP B;  2QIE A;  1VQ7 H;  2I1O A;  4C7Z A;  2WK6 A;  3NVY C;  1VQN H;  2QA4 H;  1WKI A;  3FC4 A;  5HL7 J; 
#chains in the Genus database with same CATH homology
 1YJW H;  3CME H;  1YHQ H;  1YIT H;  4U67 J;  1VQ8 H;  3CC2 H;  1K8A J;  4WFN J;  1W2B H;  3CCS H;  5GAH N;  1NJI J;  1S72 H;  5GAG N;  3CF5 J;  4IOA J;  3CC7 H;  1KD1 J;  3CC4 H;  5JVG J;  1M90 J;  3CCR H;  1Q82 J;  3PIO J;  4UY8 M;  5DM7 J;  2QEX H;  3I55 H;  1YJ9 H;  3CCE H;  1M1K J;  3CCJ H;  1K73 J;  1VQP H;  5GAD N;  3CCV H;  4WFB J;  5GAE N;  1VQK H;  4IOC J;  1KQS H;  3CCL H;  3CPW H;  1VQ6 H;  5AN9 F;  3J7Z M;  2OTJ H;  4WF9 J;  4IO9 J;  2PA2 A;  1VQO H;  3CXC H;  1Q81 J;  3CMA H;  4WFA J;  1N8R J;  4WCE J;  3DLL J;  3G6E H;  5MLC O;  1Q86 J;  3I56 H;  3G4S H;  1K9M J;  1QVF H;  3CCU H;  5DM6 J;  5JVH J;  3G71 H;  3CD6 H;  1Q7Y J;  1YI2 H;  1VQ4 H;  5H1S O;  1Y69 K;  3CCQ H;  1YJN H;  1VQ9 H;  3CCM H;  2ZJQ J;  1QVG H;  2OTL H;  1KC8 J;  2ZJP J;  1VQL H;  2ZJR J;  1VQ5 H;  1YIJ H;  1VQM H;  3PIP J;  1JJ2 H;  3OW2 H;  1VQ7 H;  1VQN H;  2QA4 H;  1WKI A;  5HL7 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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