3DLXA

Crystal structure of human 3-oxoacid coa transferase 1
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
480
structure length
470
Chain Sequence
TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase 1
publication title Crystal structure of human 3-oxoacid CoA transferase 1.
rcsb
source organism Homo sapiens
molecule tags Transferase
total genus 144
structure length 470
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2008-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3dlxA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3dlxA02
2AHWA 1POIA 3QDQA 3RRLA 1OPEA 1OOYA 4KGBA 1O9LA 2AHVA 3GK7A 1XR4A 3RRLB 2OASA 2NRBA 1POIB 5DBNA 2HJ0A 3CDKA 3D3UA 1OOZA 1K6DA 2AHUA 3CDKB 3K6MA 5DBNB 3EH7A 3OXOA 2NRCA 3DLXA 1M3EA
chains in the Genus database with same CATH superfamily
2AHWA 1POIA 3QDQA 3RRLA 1OPEA 1OOYA 4KGBA 1O9LA 2AHVA 3GK7A 1XR4A 3RRLB 2OASA 2NRBA 1POIB 5DBNA 2HJ0A 3CDKA 3D3UA 1OOZA 1K6DA 2AHUA 3CDKB 3K6MA 5DBNB 3EH7A 3OXOA 2NRCA 3DLXA 1M3EA
chains in the Genus database with same CATH topology
2AHWA 1POIA 3QDQA 3RRLA 1OPEA 1OOYA 4KGBA 1O9LA 2AHVA 3GK7A 1XR4A 3RRLB 2OASA 2NRBA 1POIB 5DBNA 2HJ0A 3CDKA 3D3UA 1OOZA 1K6DA 2AHUA 3CDKB 3K6MA 5DBNB 3EH7A 3OXOA 2NRCA 3DLXA 1M3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHW A;  1POI A;  3QDQ A;  3RRL A;  1OPE A;  1OOY A;  4KGB A;  1O9L A;  2AHV A;  3GK7 A;  1XR4 A;  3RRL B;  2OAS A;  2NRB A;  1POI B;  5DBN A;  2HJ0 A;  3CDK A;  3D3U A;  1OOZ A;  1K6D A;  2AHU A;  3CDK B;  3K6M A;  5DBN B;  3EH7 A;  3OXO A;  2NRC A;  3DLX A;  1M3E A; 
#chains in the Genus database with same CATH topology
 2AHW A;  1POI A;  3QDQ A;  3RRL A;  1OPE A;  1OOY A;  4KGB A;  1O9L A;  2AHV A;  3GK7 A;  1XR4 A;  3RRL B;  2OAS A;  2NRB A;  1POI B;  5DBN A;  2HJ0 A;  3CDK A;  3D3U A;  1OOZ A;  1K6D A;  2AHU A;  3CDK B;  3K6M A;  5DBN B;  3EH7 A;  3OXO A;  2NRC A;  3DLX A;  1M3E A; 
#chains in the Genus database with same CATH homology
 2AHW A;  1POI A;  3QDQ A;  3RRL A;  1OPE A;  1OOY A;  4KGB A;  1O9L A;  2AHV A;  3GK7 A;  1XR4 A;  3RRL B;  2OAS A;  2NRB A;  1POI B;  5DBN A;  2HJ0 A;  3CDK A;  3D3U A;  1OOZ A;  1K6D A;  2AHU A;  3CDK B;  3K6M A;  5DBN B;  3EH7 A;  3OXO A;  2NRC A;  3DLX A;  1M3E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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