3DNIA

Crystallographic refinement and structure of dnase i at 2 angstroms resolution
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
260
structure length
258
Chain Sequence
LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endonuclease
molecule keywords DEOXYRIBONUCLEASE I
publication title Crystallographic refinement and structure of DNase I at 2 A resolution.
pubmed doi rcsb
source organism Bos taurus
total genus 81
structure length 258
sequence length 260
ec nomenclature ec 3.1.21.1: Deoxyribonuclease I.
pdb deposition date 1992-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 3dniA00
5J42A 3G00A 3DNIA 3I5VA 3G0RA 1YJHA 2EI9A 1I9ZA 5J3SA 3G3YA 2O3HA 2ISIA 5INPA 5INLA 4GYZA 1AKOA 2XSWA 4C1RA 2A42B 3W2XA 5CFEA 5J3ZA 2A40B 4LNDA 1SI6X 3WCXA 3MPRA 2V0SA 5DFHA 3GA6A 4IEMA 1DEWA 4JG3A 3I41A 3NGQA 1DE8A 1NTFA 4GZ0A 5DFFA 2DDTA 2UYRX 2J63A 3G8VA 4L21A 4B5GA 5DG0A 4B5MA 4QH9A 1VYBA 2JC4A 3G1KA 5DV2A 4F1HA 3TEBA 4PUQA 3I46A 2A41B 1E9NA 5INOA 3I48A 2DDSA 3G0AA 4RUWA 5INKA 4GZ2A 3G6SA 5DV4A 5EWTA 1Y21A 3N9VA 4B5JA 5J3PA 3W2YA 5INQA 3FZIA 4F1IA 3U8UA 4B5IA 2VOAA 1ATND 1BIXA 2DDRA 5HT2A 5DFIA 5J8NA 3G38A 2V0RA 2O3CA 3G91A 2DNJA 3G4TA 3NR8A 5DFJA 4F1HB 4L20A 3MTCA 4QHEA 1DNKA 3G2CA 4AWNA 1DE9A 1ZWXA 3G2DA 3G3CA 2D1KB 4GZ1A 3NGNA 5A7IA 1I9YA 3W3DB 2A3ZB 4F1RA 4A9CA 4QHDA 4L1YA 4B5FA 3NGOA 4FPVA 4B5HA 2IMQX 4FVAA 4K6LF 2JC5A 5A7JA 5INNA 3K55A 5INMA 1WDUA 4CMLA 3CJCD 5CFGA 3L1WA 1SR4B 2F2FB 4GEWA 4L1ZA 4CMNA 1HD7A 2F1NA
chains in the Genus database with same CATH superfamily
5J42A 3G00A 3DNIA 3I5VA 3G0RA 1YJHA 2EI9A 1I9ZA 5J3SA 3G3YA 2O3HA 2ISIA 5INPA 5INLA 4GYZA 1AKOA 2XSWA 4C1RA 2A42B 3W2XA 5CFEA 5J3ZA 2A40B 4LNDA 1SI6X 3WCXA 3MPRA 2V0SA 5DFHA 3GA6A 4IEMA 1DEWA 4JG3A 3I41A 3NGQA 1DE8A 1NTFA 4GZ0A 5DFFA 2DDTA 2UYRX 2J63A 3G8VA 4L21A 4B5GA 5DG0A 4B5MA 4QH9A 1VYBA 2JC4A 3G1KA 5DV2A 4F1HA 3TEBA 4PUQA 3I46A 2A41B 1E9NA 5INOA 3I48A 2DDSA 3G0AA 4RUWA 5INKA 4GZ2A 3G6SA 5DV4A 5EWTA 1Y21A 3N9VA 4B5JA 5J3PA 3W2YA 5INQA 3FZIA 4F1IA 3U8UA 4B5IA 2VOAA 1ATND 1BIXA 2DDRA 5HT2A 5DFIA 5J8NA 3G38A 2V0RA 2O3CA 3G91A 2DNJA 3G4TA 3NR8A 5DFJA 4F1HB 4L20A 3MTCA 4QHEA 1DNKA 3G2CA 4AWNA 1DE9A 1ZWXA 3G2DA 3G3CA 2D1KB 4GZ1A 3NGNA 5A7IA 1I9YA 3W3DB 2A3ZB 4F1RA 4A9CA 4QHDA 4L1YA 4B5FA 3NGOA 4FPVA 4B5HA 2IMQX 4FVAA 4K6LF 2JC5A 5A7JA 5INNA 3K55A 5INMA 1WDUA 4CMLA 3CJCD 5CFGA 3L1WA 1SR4B 2F2FB 4GEWA 4L1ZA 4CMNA 1HD7A 2F1NA
chains in the Genus database with same CATH topology
5J42A 3G00A 3DNIA 3I5VA 3G0RA 1YJHA 2EI9A 1I9ZA 5J3SA 3G3YA 2O3HA 2ISIA 5INPA 5INLA 4GYZA 1AKOA 2XSWA 4C1RA 2A42B 3W2XA 5CFEA 5J3ZA 2A40B 4LNDA 1SI6X 3WCXA 3MPRA 2V0SA 5DFHA 3GA6A 4IEMA 1DEWA 4JG3A 3I41A 3NGQA 1DE8A 1NTFA 4GZ0A 5DFFA 2DDTA 2UYRX 2J63A 3G8VA 4L21A 4B5GA 5DG0A 4B5MA 4QH9A 1VYBA 2JC4A 3G1KA 5DV2A 4F1HA 3TEBA 4PUQA 3I46A 2A41B 1E9NA 5INOA 3I48A 2DDSA 3G0AA 4RUWA 5INKA 4GZ2A 3G6SA 5DV4A 5EWTA 1Y21A 3N9VA 4B5JA 5J3PA 3W2YA 5INQA 3FZIA 4F1IA 3U8UA 4B5IA 2VOAA 1ATND 1BIXA 2DDRA 5HT2A 5DFIA 5J8NA 3G38A 2V0RA 2O3CA 3G91A 2DNJA 3G4TA 3NR8A 5DFJA 4F1HB 4L20A 3MTCA 4QHEA 1DNKA 3G2CA 4AWNA 1DE9A 1ZWXA 3G2DA 3G3CA 2D1KB 4GZ1A 3NGNA 5A7IA 1I9YA 3W3DB 2A3ZB 4F1RA 4A9CA 4QHDA 4L1YA 4B5FA 3NGOA 4FPVA 4B5HA 2IMQX 4FVAA 4K6LF 2JC5A 5A7JA 5INNA 3K55A 5INMA 1WDUA 4CMLA 3CJCD 5CFGA 3L1WA 1SR4B 2F2FB 4GEWA 4L1ZA 4CMNA 1HD7A 2F1NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5J42 A;  3G00 A;  3DNI A;  3I5V A;  3G0R A;  1YJH A;  2EI9 A;  1I9Z A;  5J3S A;  3G3Y A;  2O3H A;  2ISI A;  5INP A;  5INL A;  4GYZ A;  1AKO A;  2XSW A;  4C1R A;  2A42 B;  3W2X A;  5CFE A;  5J3Z A;  2A40 B;  4LND A;  1SI6 X;  3WCX A;  3MPR A;  2V0S A;  5DFH A;  3GA6 A;  4IEM A;  1DEW A;  4JG3 A;  3I41 A;  3NGQ A;  1DE8 A;  1NTF A;  4GZ0 A;  5DFF A;  2DDT A;  2UYR X;  2J63 A;  3G8V A;  4L21 A;  4B5G A;  5DG0 A;  4B5M A;  4QH9 A;  1VYB A;  2JC4 A;  3G1K A;  5DV2 A;  4F1H A;  3TEB A;  4PUQ A;  3I46 A;  2A41 B;  1E9N A;  5INO A;  3I48 A;  2DDS A;  3G0A A;  4RUW A;  5INK A;  4GZ2 A;  3G6S A;  5DV4 A;  5EWT A;  1Y21 A;  3N9V A;  4B5J A;  5J3P A;  3W2Y A;  5INQ A;  3FZI A;  4F1I A;  3U8U A;  4B5I A;  2VOA A;  1ATN D;  1BIX A;  2DDR A;  5HT2 A;  5DFI A;  5J8N A;  3G38 A;  2V0R A;  2O3C A;  3G91 A;  2DNJ A;  3G4T A;  3NR8 A;  5DFJ A;  4F1H B;  4L20 A;  3MTC A;  4QHE A;  1DNK A;  3G2C A;  4AWN A;  1DE9 A;  1ZWX A;  3G2D A;  3G3C A;  2D1K B;  4GZ1 A;  3NGN A;  5A7I A;  1I9Y A;  3W3D B;  2A3Z B;  4F1R A;  4A9C A;  4QHD A;  4L1Y A;  4B5F A;  3NGO A;  4FPV A;  4B5H A;  2IMQ X;  4FVA A;  4K6L F;  2JC5 A;  5A7J A;  5INN A;  3K55 A;  5INM A;  1WDU A;  4CML A;  3CJC D;  5CFG A;  3L1W A;  1SR4 B;  2F2F B;  4GEW A;  4L1Z A;  4CMN A;  1HD7 A;  2F1N A; 
#chains in the Genus database with same CATH topology
 5J42 A;  3G00 A;  3DNI A;  3I5V A;  3G0R A;  1YJH A;  2EI9 A;  1I9Z A;  5J3S A;  3G3Y A;  2O3H A;  2ISI A;  5INP A;  5INL A;  4GYZ A;  1AKO A;  2XSW A;  4C1R A;  2A42 B;  3W2X A;  5CFE A;  5J3Z A;  2A40 B;  4LND A;  1SI6 X;  3WCX A;  3MPR A;  2V0S A;  5DFH A;  3GA6 A;  4IEM A;  1DEW A;  4JG3 A;  3I41 A;  3NGQ A;  1DE8 A;  1NTF A;  4GZ0 A;  5DFF A;  2DDT A;  2UYR X;  2J63 A;  3G8V A;  4L21 A;  4B5G A;  5DG0 A;  4B5M A;  4QH9 A;  1VYB A;  2JC4 A;  3G1K A;  5DV2 A;  4F1H A;  3TEB A;  4PUQ A;  3I46 A;  2A41 B;  1E9N A;  5INO A;  3I48 A;  2DDS A;  3G0A A;  4RUW A;  5INK A;  4GZ2 A;  3G6S A;  5DV4 A;  5EWT A;  1Y21 A;  3N9V A;  4B5J A;  5J3P A;  3W2Y A;  5INQ A;  3FZI A;  4F1I A;  3U8U A;  4B5I A;  2VOA A;  1ATN D;  1BIX A;  2DDR A;  5HT2 A;  5DFI A;  5J8N A;  3G38 A;  2V0R A;  2O3C A;  3G91 A;  2DNJ A;  3G4T A;  3NR8 A;  5DFJ A;  4F1H B;  4L20 A;  3MTC A;  4QHE A;  1DNK A;  3G2C A;  4AWN A;  1DE9 A;  1ZWX A;  3G2D A;  3G3C A;  2D1K B;  4GZ1 A;  3NGN A;  5A7I A;  1I9Y A;  3W3D B;  2A3Z B;  4F1R A;  4A9C A;  4QHD A;  4L1Y A;  4B5F A;  3NGO A;  4FPV A;  4B5H A;  2IMQ X;  4FVA A;  4K6L F;  2JC5 A;  5A7J A;  5INN A;  3K55 A;  5INM A;  1WDU A;  4CML A;  3CJC D;  5CFG A;  3L1W A;  1SR4 B;  2F2F B;  4GEW A;  4L1Z A;  4CMN A;  1HD7 A;  2F1N A; 
#chains in the Genus database with same CATH homology
 5J42 A;  3G00 A;  3DNI A;  3I5V A;  3G0R A;  1YJH A;  2EI9 A;  1I9Z A;  5J3S A;  3G3Y A;  2O3H A;  2ISI A;  5INP A;  5INL A;  4GYZ A;  1AKO A;  2XSW A;  4C1R A;  2A42 B;  3W2X A;  5CFE A;  5J3Z A;  2A40 B;  4LND A;  1SI6 X;  3WCX A;  3MPR A;  2V0S A;  5DFH A;  3GA6 A;  4IEM A;  1DEW A;  4JG3 A;  3I41 A;  3NGQ A;  1DE8 A;  1NTF A;  4GZ0 A;  5DFF A;  2DDT A;  2UYR X;  2J63 A;  3G8V A;  4L21 A;  4B5G A;  5DG0 A;  4B5M A;  4QH9 A;  1VYB A;  2JC4 A;  3G1K A;  5DV2 A;  4F1H A;  3TEB A;  4PUQ A;  3I46 A;  2A41 B;  1E9N A;  5INO A;  3I48 A;  2DDS A;  3G0A A;  4RUW A;  5INK A;  4GZ2 A;  3G6S A;  5DV4 A;  5EWT A;  1Y21 A;  3N9V A;  4B5J A;  5J3P A;  3W2Y A;  5INQ A;  3FZI A;  4F1I A;  3U8U A;  4B5I A;  2VOA A;  1ATN D;  1BIX A;  2DDR A;  5HT2 A;  5DFI A;  5J8N A;  3G38 A;  2V0R A;  2O3C A;  3G91 A;  2DNJ A;  3G4T A;  3NR8 A;  5DFJ A;  4F1H B;  4L20 A;  3MTC A;  4QHE A;  1DNK A;  3G2C A;  4AWN A;  1DE9 A;  1ZWX A;  3G2D A;  3G3C A;  2D1K B;  4GZ1 A;  3NGN A;  5A7I A;  1I9Y A;  3W3D B;  2A3Z B;  4F1R A;  4A9C A;  4QHD A;  4L1Y A;  4B5F A;  3NGO A;  4FPV A;  4B5H A;  2IMQ X;  4FVA A;  4K6L F;  2JC5 A;  5A7J A;  5INN A;  3K55 A;  5INM A;  1WDU A;  4CML A;  3CJC D;  5CFG A;  3L1W A;  1SR4 B;  2F2F B;  4GEW A;  4L1Z A;  4CMN A;  1HD7 A;  2F1N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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