3DO9A

Crystal structure of protein ba1542 from bacillus anthracis str.ames
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
179
structure length
179
Chain Sequence
PVSVNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQLMHKVHFVEHAKYCPRGLVMSANCVKDTPFHFFKQNVMTTDAEKSFHDIRLNRDEDIYIQLNFKSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTAELKMLEGHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Protein Ba1542 from Bacillus Anthracis Str.Ames.
rcsb
molecule tags Structural genomics, unknown function
source organism Bacillus anthracis
molecule keywords UPF0302 protein BA_1542/GBAA1542/BAS1430
total genus 57
structure length 179
sequence length 179
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08858 IDEAL IDEAL domain
A PF08864 UPF0302 UPF0302 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.290 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 3do9A01
3DO9A
chains in the Genus database with same CATH superfamily
2QZGA 4PL5A 4Z7GA 2JB3A 3LJ0A 2XTRA 3FVVA 4Z7HA 4PL4A 3VA9A 3I9V1 1U5KA 2K19A 2JB2A 2ETDA 3FNBA 2BL8A 4PL3A 4G75A 3IAM1 3AJFA 2F66B 4YZDA 2F6MB 1TDPA 3LJ1A 2FEFA 4YZCA 2FU2A 1W3SA 4OAVB 2JBWA 3SDJA 4O1PA 2ZW3A 3DA3A 2KKMA 3Q8DA 1SJ8A 2XMXA 4JCVE 4YZ9A 3LJ2A 4G76A 4NV2A 4DWLA 4HFVA 2RLDA 2V6EA 2GSCA 2RIOA 3F4MA 2YFBA 4AS2A 2YFAA 3KP9A 2QSBA 2ZRRA 2HGKA 2JB1A 2JAEA 2IP6A 5LNK1 2QGMA 3DO9A 3P23A 4I1TA 2A2CA 3UITA 4GXTA 2FUG1 2E8GA 2P22B 2RADA 4Q9VA 4AS3A 3IAS1 2CAZB 3FBVA 2XTQA 2V1CC 2L1LB 3JSBA 4O1OA 4NV5A 3L0IA 5HGIA 1JQOA 2BL7A 1YO7A 2MJFB 4U6RA 3DA4A 4OAUC 2A2DA 3B55A 4HEA1
chains in the Genus database with same CATH topology
4PL5A 4Z7GA 2JB3A 3LJ0A 2XTRA 4Z7HA 4PL4A 3VA9A 3I9V1 1U5KA 2K19A 2JB2A 4PL3A 4G75A 3IAM1 3AJFA 2F66B 4YZDA 2F6MB 3LJ1A 4YZCA 1W3SA 4OAVB 3SDJA 4O1PA 3DA3A 2KKMA 3Q8DA 1SJ8A 2XMXA 4JCVE 4YZ9A 3LJ2A 4G76A 4NV2A 4DWLA 4HFVA 2V6EA 2RIOA 3F4MA 2YFBA 4AS2A 2YFAA 3KP9A 2ZRRA 2JB1A 2JAEA 2IP6A 5LNK1 3DO9A 3P23A 4I1TA 3UITA 2A2CA 4GXTA 2FUG1 2E8GA 2P22B 4Q9VA 4AS3A 3IAS1 2CAZB 3FBVA 2XTQA 2V1CC 2L1LB 3JSBA 4O1OA 4NV5A 3L0IA 5HGIA 1YO7A 2MJFB 4U6RA 3DA4A 4OAUC 2A2DA 4HEA1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DO9 A; 
#chains in the Genus database with same CATH topology
 2QZG A;  4PL5 A;  4Z7G A;  2JB3 A;  3LJ0 A;  2XTR A;  3FVV A;  4Z7H A;  4PL4 A;  3VA9 A;  3I9V 1;  1U5K A;  2K19 A;  2JB2 A;  2ETD A;  3FNB A;  2BL8 A;  4PL3 A;  4G75 A;  3IAM 1;  3AJF A;  2F66 B;  4YZD A;  2F6M B;  1TDP A;  3LJ1 A;  2FEF A;  4YZC A;  2FU2 A;  1W3S A;  4OAV B;  2JBW A;  3SDJ A;  4O1P A;  2ZW3 A;  3DA3 A;  2KKM A;  3Q8D A;  1SJ8 A;  2XMX A;  4JCV E;  4YZ9 A;  3LJ2 A;  4G76 A;  4NV2 A;  4DWL A;  4HFV A;  2RLD A;  2V6E A;  2GSC A;  2RIO A;  3F4M A;  2YFB A;  4AS2 A;  2YFA A;  3KP9 A;  2QSB A;  2ZRR A;  2HGK A;  2JB1 A;  2JAE A;  2IP6 A;  5LNK 1;  2QGM A;  3DO9 A;  3P23 A;  4I1T A;  2A2C A;  3UIT A;  4GXT A;  2FUG 1;  2E8G A;  2P22 B;  2RAD A;  4Q9V A;  4AS3 A;  3IAS 1;  2CAZ B;  3FBV A;  2XTQ A;  2V1C C;  2L1L B;  3JSB A;  4O1O A;  4NV5 A;  3L0I A;  5HGI A;  1JQO A;  2BL7 A;  1YO7 A;  2MJF B;  4U6R A;  3DA4 A;  4OAU C;  2A2D A;  3B55 A;  4HEA 1; 
#chains in the Genus database with same CATH homology
 4PL5 A;  4Z7G A;  2JB3 A;  3LJ0 A;  2XTR A;  4Z7H A;  4PL4 A;  3VA9 A;  3I9V 1;  1U5K A;  2K19 A;  2JB2 A;  4PL3 A;  4G75 A;  3IAM 1;  3AJF A;  2F66 B;  4YZD A;  2F6M B;  3LJ1 A;  4YZC A;  1W3S A;  4OAV B;  3SDJ A;  4O1P A;  3DA3 A;  2KKM A;  3Q8D A;  1SJ8 A;  2XMX A;  4JCV E;  4YZ9 A;  3LJ2 A;  4G76 A;  4NV2 A;  4DWL A;  4HFV A;  2V6E A;  2RIO A;  3F4M A;  2YFB A;  4AS2 A;  2YFA A;  3KP9 A;  2ZRR A;  2JB1 A;  2JAE A;  2IP6 A;  5LNK 1;  3DO9 A;  3P23 A;  4I1T A;  3UIT A;  2A2C A;  4GXT A;  2FUG 1;  2E8G A;  2P22 B;  4Q9V A;  4AS3 A;  3IAS 1;  2CAZ B;  3FBV A;  2XTQ A;  2V1C C;  2L1L B;  3JSB A;  4O1O A;  4NV5 A;  3L0I A;  5HGI A;  1YO7 A;  2MJF B;  4U6R A;  3DA4 A;  4OAU C;  2A2D A;  4HEA 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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