3DWLD

Crystal structure of fission yeast arp2/3 complex lacking the arp2 subunit
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
303
structure length
272
Chain Sequence
MLSLDYNNIFIYELLTERFSSENQVVTDFDGVTFHISTPTKILISLSMKCYPELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPADEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELAPMLDKQATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRTAPQVLFSYRDPPLEIRDIQFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin-related protein 3
publication title Structure and biochemical properties of fission yeast arp2/3 complex lacking the arp2 subunit.
pubmed doi rcsb
total genus 58
structure length 272
sequence length 303
chains with identical sequence I
ec nomenclature
pdb deposition date 2008-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 3dwlD02
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 3dwlD01
3ULEF 3UKRD 3DXKD 3RSED 3DWLF 2P9PF 1U2VD 2P9KF 2P9IF 2P9SD 4JD2F 3UKUD 2P9UF 1K8KF 2P9ND 3DXMF 1TYQD 4XEIF 2P9LD 3ULED 3UKRF 3DXKF 3RSEF 3DWLD 2P9PD 2P9KD 1U2VF 2P9ID 2P9SF 2P9UD 3UKUF 4JD2D 2P9NF 3DXMD 1K8KD 1TYQF 4XEID 2P9LF
chains in the Genus database with same CATH superfamily
1K3EA 1S28A 1XKPC 3TU3A 3ULEF 3UKRD 2BSIA 4EBRA 3DXKD 3EPUA 3RSED 3DWLF 1U2VD 1N5BA 2P9KF 2P9PF 1XKPB 2P9IF 3KXYA 1K3SA 2BSJA 2P9SD 4G6TA 4JD2F 2OD0A 2DYTA 1K8KF 2P9UF 4GSLC 3UKUD 1K6ZA 2P9ND 2XGAA 3DXMF 1L2WA 2PLGA 3VX7B 1TYQD 4GF3A 4XEIF 2P9LD 3CXJA 2FM8A 4H5BA 3VX8B 4AKXA 3ULED 4JMFB 2KC5A 2LPUA 3UKRF 3DXKF 3RSEF 2MQDA 2BSHA 2P9PD 3DWLD 2P9KD 1RY9A 1U2VF 2P9ID 2P9SF 2P9UD 1JYOA 3UKUF 1JYAA 4JD2D 2P9NF 3DXMD 1K8KD 1TTWA 2BHOA 1TYQF 4XEID 2P9LF
chains in the Genus database with same CATH topology
1K3EA 1S28A 1XKPC 3TU3A 3ULEF 3UKRD 2BSIA 4EBRA 3DXKD 3EPUA 3RSED 3DWLF 1U2VD 1N5BA 2P9KF 2P9PF 1XKPB 2P9IF 3KXYA 1K3SA 2BSJA 2P9SD 4G6TA 4JD2F 2P9UF 2DYTA 1K8KF 3UKUD 4GSLC 1K6ZA 2P9ND 2XGAA 3DXMF 1L2WA 2PLGA 3VX7B 1TYQD 4GF3A 4XEIF 2P9LD 3CXJA 2FM8A 4H5BA 3VX8B 4AKXA 3ULED 4JMFB 2KC5A 2LPUA 3UKRF 3DXKF 3RSEF 2MQDA 2BSHA 2P9PD 3DWLD 2P9KD 1RY9A 1U2VF 2P9ID 2P9SF 2P9UD 1JYOA 3UKUF 1JYAA 4JD2D 2P9NF 3DXMD 1K8KD 1TTWA 2BHOA 1TYQF 4XEID 2P9LF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ULE F;  3UKR D;  3DXK D;  3RSE D;  3DWL F;  2P9P F;  1U2V D;  2P9K F;  2P9I F;  2P9S D;  4JD2 F;  3UKU D;  2P9U F;  1K8K F;  2P9N D;  3DXM F;  1TYQ D;  4XEI F;  2P9L D;  3ULE D;  3UKR F;  3DXK F;  3RSE F;  3DWL D;  2P9P D;  2P9K D;  1U2V F;  2P9I D;  2P9S F;  2P9U D;  3UKU F;  4JD2 D;  2P9N F;  3DXM D;  1K8K D;  1TYQ F;  4XEI D;  2P9L F; 
#chains in the Genus database with same CATH topology
 1K3E A;  1S28 A;  1XKP C;  3TU3 A;  3ULE F;  3UKR D;  2BSI A;  4EBR A;  3DXK D;  3EPU A;  3RSE D;  3DWL F;  1U2V D;  1N5B A;  2P9K F;  2P9P F;  1XKP B;  2P9I F;  3KXY A;  1K3S A;  2BSJ A;  2P9S D;  4G6T A;  4JD2 F;  2OD0 A;  2DYT A;  1K8K F;  2P9U F;  4GSL C;  3UKU D;  1K6Z A;  2P9N D;  2XGA A;  3DXM F;  1L2W A;  2PLG A;  3VX7 B;  1TYQ D;  4GF3 A;  4XEI F;  2P9L D;  3CXJ A;  2FM8 A;  4H5B A;  3VX8 B;  4AKX A;  3ULE D;  4JMF B;  2KC5 A;  2LPU A;  3UKR F;  3DXK F;  3RSE F;  2MQD A;  2BSH A;  2P9P D;  3DWL D;  2P9K D;  1RY9 A;  1U2V F;  2P9I D;  2P9S F;  2P9U D;  1JYO A;  3UKU F;  1JYA A;  4JD2 D;  2P9N F;  3DXM D;  1K8K D;  1TTW A;  2BHO A;  1TYQ F;  4XEI D;  2P9L F; 
#chains in the Genus database with same CATH homology
 1K3E A;  1S28 A;  1XKP C;  3TU3 A;  3ULE F;  3UKR D;  2BSI A;  4EBR A;  3DXK D;  3EPU A;  3RSE D;  3DWL F;  1U2V D;  1N5B A;  2P9K F;  2P9P F;  1XKP B;  2P9I F;  3KXY A;  1K3S A;  2BSJ A;  2P9S D;  4G6T A;  4JD2 F;  2P9U F;  2DYT A;  1K8K F;  3UKU D;  4GSL C;  1K6Z A;  2P9N D;  2XGA A;  3DXM F;  1L2W A;  2PLG A;  3VX7 B;  1TYQ D;  4GF3 A;  4XEI F;  2P9L D;  3CXJ A;  2FM8 A;  4H5B A;  3VX8 B;  4AKX A;  3ULE D;  4JMF B;  2KC5 A;  2LPU A;  3UKR F;  3DXK F;  3RSE F;  2MQD A;  2BSH A;  2P9P D;  3DWL D;  2P9K D;  1RY9 A;  1U2V F;  2P9I D;  2P9S F;  2P9U D;  1JYO A;  3UKU F;  1JYA A;  4JD2 D;  2P9N F;  3DXM D;  1K8K D;  1TTW A;  2BHO A;  1TYQ F;  4XEI D;  2P9L F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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