3DWLF

Crystal structure of fission yeast arp2/3 complex lacking the arp2 subunit
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
166
structure length
166
Chain Sequence
NTLRPYLNAVRSTLTASLALEEFSSEIVERQSQPEVEVGRSPEILLKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSCF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin-related protein 3
publication title Structure and biochemical properties of fission yeast arp2/3 complex lacking the arp2 subunit.
pubmed doi rcsb
total genus 40
structure length 166
sequence length 166
chains with identical sequence K
ec nomenclature
pdb deposition date 2008-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF05856 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 3dwlF00
3DXMF 4XEIF 3UKRD 1TYQD 3DWLD 3UKUD 3RSEF 3UKRF 1TYQF 2P9PD 3DWLF 4JD2D 3DXKD 3UKUF 3ULED 2P9LD 2P9ID 1U2VD 2P9PF 2P9SD 2P9KD 4JD2F 3DXKF 3ULEF 2P9ND 2P9LF 1U2VF 2P9IF 2P9UD 2P9KF 2P9SF 1K8KD 3DXMD 4XEID 2P9NF 2P9UF 3RSED 1K8KF
chains in the Genus database with same CATH superfamily
1JYAA 3DXMF 4XEIF 3UKRD 1TYQD 4GF3A 1S28A 3DWLD 1K3EA 1N5BA 4G6TA 2BSHA 3UKUD 3RSEF 1L2WA 3CXJA 3UKRF 1TYQF 2P9PD 3DWLF 2BHOA 2BSIA 2FM8A 4JD2D 2LPUA 2PLGA 3DXKD 4GSLC 4JMFB 1K3SA 3UKUF 2P9LD 3TU3A 2P9ID 3ULED 1U2VD 1TTWA 2P9PF 4EBRA 2P9SD 3VX7B 2P9KD 4JD2F 1K6ZA 3DXKF 3VX8B 1RY9A 3ULEF 2MQDA 2P9ND 2P9LF 4AKXA 1U2VF 1JYOA 2P9IF 3KXYA 2P9UD 2P9KF 2XGAA 2P9SF 3EPUA 1K8KD 3DXMD 4XEID 2P9NF 2OD0A 1XKPC 1XKPB 2BSJA 2DYTA 2P9UF 2KC5A 3RSED 4H5BA 1K8KF
chains in the Genus database with same CATH topology
1JYAA 3DXMF 4XEIF 3UKRD 1TYQD 4GF3A 1S28A 3DWLD 1K3EA 1N5BA 4G6TA 2BSHA 3UKUD 3RSEF 1L2WA 3CXJA 3UKRF 1TYQF 2P9PD 3DWLF 2BHOA 2BSIA 2FM8A 4JD2D 2LPUA 2PLGA 3DXKD 4GSLC 4JMFB 1K3SA 3UKUF 2P9LD 3TU3A 2P9ID 3ULED 1U2VD 1TTWA 2P9PF 4EBRA 2P9SD 3VX7B 2P9KD 4JD2F 1K6ZA 3DXKF 3VX8B 1RY9A 3ULEF 2MQDA 2P9ND 2P9LF 4AKXA 1U2VF 1JYOA 2P9IF 3KXYA 2P9UD 2P9KF 2XGAA 2P9SF 3EPUA 1K8KD 3DXMD 4XEID 2P9NF 1XKPC 1XKPB 2BSJA 2DYTA 2P9UF 2KC5A 3RSED 4H5BA 1K8KF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DXM F;  4XEI F;  3UKR D;  1TYQ D;  3DWL D;  3UKU D;  3RSE F;  3UKR F;  1TYQ F;  2P9P D;  3DWL F;  4JD2 D;  3DXK D;  3UKU F;  3ULE D;  2P9L D;  2P9I D;  1U2V D;  2P9P F;  2P9S D;  2P9K D;  4JD2 F;  3DXK F;  3ULE F;  2P9N D;  2P9L F;  1U2V F;  2P9I F;  2P9U D;  2P9K F;  2P9S F;  1K8K D;  3DXM D;  4XEI D;  2P9N F;  2P9U F;  3RSE D;  1K8K F; 
#chains in the Genus database with same CATH topology
 1JYA A;  3DXM F;  4XEI F;  3UKR D;  1TYQ D;  4GF3 A;  1S28 A;  3DWL D;  1K3E A;  1N5B A;  4G6T A;  2BSH A;  3UKU D;  3RSE F;  1L2W A;  3CXJ A;  3UKR F;  1TYQ F;  2P9P D;  3DWL F;  2BHO A;  2BSI A;  2FM8 A;  4JD2 D;  2LPU A;  2PLG A;  3DXK D;  4GSL C;  4JMF B;  1K3S A;  3UKU F;  2P9L D;  3TU3 A;  2P9I D;  3ULE D;  1U2V D;  1TTW A;  2P9P F;  4EBR A;  2P9S D;  3VX7 B;  2P9K D;  4JD2 F;  1K6Z A;  3DXK F;  3VX8 B;  1RY9 A;  3ULE F;  2MQD A;  2P9N D;  2P9L F;  4AKX A;  1U2V F;  1JYO A;  2P9I F;  3KXY A;  2P9U D;  2P9K F;  2XGA A;  2P9S F;  3EPU A;  1K8K D;  3DXM D;  4XEI D;  2P9N F;  2OD0 A;  1XKP C;  1XKP B;  2BSJ A;  2DYT A;  2P9U F;  2KC5 A;  3RSE D;  4H5B A;  1K8K F; 
#chains in the Genus database with same CATH homology
 1JYA A;  3DXM F;  4XEI F;  3UKR D;  1TYQ D;  4GF3 A;  1S28 A;  3DWL D;  1K3E A;  1N5B A;  4G6T A;  2BSH A;  3UKU D;  3RSE F;  1L2W A;  3CXJ A;  3UKR F;  1TYQ F;  2P9P D;  3DWL F;  2BHO A;  2BSI A;  2FM8 A;  4JD2 D;  2LPU A;  2PLG A;  3DXK D;  4GSL C;  4JMF B;  1K3S A;  3UKU F;  2P9L D;  3TU3 A;  2P9I D;  3ULE D;  1U2V D;  1TTW A;  2P9P F;  4EBR A;  2P9S D;  3VX7 B;  2P9K D;  4JD2 F;  1K6Z A;  3DXK F;  3VX8 B;  1RY9 A;  3ULE F;  2MQD A;  2P9N D;  2P9L F;  4AKX A;  1U2V F;  1JYO A;  2P9I F;  3KXY A;  2P9U D;  2P9K F;  2XGA A;  2P9S F;  3EPU A;  1K8K D;  3DXM D;  4XEI D;  2P9N F;  1XKP C;  1XKP B;  2BSJ A;  2DYT A;  2P9U F;  2KC5 A;  3RSE D;  4H5B A;  1K8K F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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