3DZ2B

Human adometdc with 5'-[(3-aminopropyl)methylamino]-5'deoxy-8-methyladenosine
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
64
structure length
60
Chain Sequence
AHFFEGTEKLLEVWFSRQQQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase beta chain
publication title New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C8 Substitution in Structural Analogues of S-Adenosylmethionine
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 60
sequence length 64
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2008-07-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 3dz2B01
3EP4B 1I7CB 3EP3B 5TVOB 1I7MB 3DZ5B 1I72B 3DZ6B 1I7BB 3EP5B 3H0WB 3EPBB 3DZ4B 3DZ3B 3EP6B 1I79B 3EP9B 3H0VB 3EP8B 3EPAB 3DZ7B 3DZ2B 3EP7B 1JENB 1MHMB
chains in the Genus database with same CATH superfamily
2GLXA 3B20A 3EP3B 4XRGA 3ZDFA 5JYFA 3PZBA 3WB9A 2X5JO 3EZYA 4TVBA 4FB5A 4NHEA 2GYYA 1P1IA 1DRUA 3PYLA 3TZ6A 2O48X 3GPDG 5JW6A 4R41A 2B4TO 2X5KO 3RCBA 2D2IA 2DC1A 5A02A 1VSUA 2CZCA 4MVJD 1XYGA 3CIFA 3VOSA 4R4JA 4XQ9A 3IJPA 1I7BB 4PG4A 4R3WA 3EPBB 3K2BA 4LGVA 4R3NA 2AXQA 1IHXA 3PFWO 2Q22A 2GZ2A 1GD1O 1K3TA 1U8FO 1DRWA 3H0VB 4R5MA 3E5RA 1ARZA 3EPAB 5JYAA 3GNQA 3KSDO 5EIOA 3QVWA 1VM6A 3PWSA 5A05A 1GL3A 2VYND 2R00C 3Q11A 2PH5A 1LC0A 4ZICA 3IWDB 3L6OO 2P2SA 2HO5A 4KOAA 1U1IA 3KV3O 1H6AA 1CF2O 3E6AA 2IXAA 4MVJH 3MZ0A 2XF8A 4MVJI 1H6CA 3ABIA 2YV3A 3MOIA 2EP7A 3HNPA 4K9DA 5A03A 4YDRA 1QXSA 3CMCO 1GADO 3EP7B 2I5PO 1H6DA 4MINA 3RC9A 1E5QA 4XR4A 1I7MB 3C1AA 3IDSA 3KUXA 2IXBA 1PR3A 1DC3A 1PU2A 3DR3A 1Q7GA 3E18A 5T73A 3OA0A 1P1HA 1JKFA 1Q2XA 2GD1O 3EVNA 2FPNA 1GPDG 3NTOA 5JYEA 3OA2A 2R00A 4WOJA 4MVJE 1T4DA 4P8RA 1LC3A 4BOYA 1NBOA 3EP8B 1YWGO 2B4RO 3V2UA 3DOCA 4LSMA 3QVTA 4INAA 1PS8A 2VYVA 2Q49A 2GZ1A 2QZ9A 1SZJG 1H6BA 3WBBA 4LRTB 1EVJA 3QW2A 4PG5A 3UUWA 3L4SO 1GR0A 4AK1A 3DAPA 4PLPA 1PQUA 4PG7A 1RM0A 1TLTA 3DB2A 3Q0EA 1DC5A 1J5PA 3Q1LA 1B7GO 1DIHA 1TVEA 3HQ4O 1I7CB 4L9RA 1GYQA 5TVOB 3WGZA 3C8MA 5C7OO 2DUUA 1JN0A 3IWCB 5M6DA 3EP5B 4MIOA 1IHYA 3DZ4B 4O63O 2YYYA 3EP6B 1C3VA 1VKOA 3OHSX 2DBVO 3QVSA 3GDOA 1NQAO 3ZCXA 3FHLA 3EP4B 1DC4A 2PKRA 4LRSB 1H93A 4MKZA 2DAPA 1E77A 5J9GA 5GZ1A 5JY6A 2BH9A 3TUTA 1GYPA 3H0WB 2EJWA 1QKIA 4XQCA 4MKXA 5A06A 4WNCA 3DZ7B 3BIOA 4MVJP 4R54A 4RL6A 2OZPA 4MVJF 4Z0HO 3DMTC 1DPGA 3E82A 4GPD1 1VSVA 3EC7A 4ZHSA 1MB4A 3MTJA 1ML3A 4MIYA 1QMHA 3PQVA 4DBVO 3QVXA 1OBFO 1CRWG 3K73O 4IQ8A 1XEAA 1PQPA 5EINA 3CINA 3FD8A 3STHA 4MVJM 3BTSA 3U3XA 3CEAA 5C7IO 4WNIA 4DPLA 1J0XO 3LC2O 3VAZA 3PYXA 1CERA 1H2HA 2VYVD 3RVDA 1S7CA 5DDIP 3JSAA 1GAEO 5GZ6A 1RM5A 4R51A 1ZH8A 3PYMA 1FF9A 1VKNA 3LVFO 4GQAA 1NWHA 2I3GA 3V5NA 3DTYA 3DZ2B 3NT5A 4JN6B 4F3YA 1DAPA 1MC4A 3O9ZA 1DRVA 3QV1A 5CEFA 3NTRA 4XQEA 1I32A 2NVWA 3WGOA 3DMTA 1ZNQO 5EESA 1JKIA 3HJAA 3DZ3B 2H63A 3B1KA 1NQ5A 3EP9B 4HKTA 4PG6A 3RBVA 2EP5A 1HDGO 1E7MA 3PZRA 3RC2A 1NQOA 3NT2A 2G17A 1NX6A 4YWJA 2BHLA 2X0NA 4L8VA 4MJLA 4H3VA 1T4BA 3ZJXA 4O89A 5EERA 4GMFA 1H94A 1P1JA 3WBFA 4EW6A 3CPSA 1RYDA 3HSKA 3E9MA 3V1YA 3RC7A 5AQ1A 3B1JA 1RYEA 4XQGA 1P1FA 1EBFA 1VC2A 3LC1O 3Q2IA 4N54A 3HXLA 4O59O 2CVOA 3H9EO 4DPKA 1H9BA 4CLQA 1DC6A 2NQTA 3L0DA 3BTVA 4PG8A 1E7YA 4HADA 1I79B 1E5LA 3EUWA 2HKIA 3TUXA 3Q2KA 2GZ3A 3IP3A 4MVJG 3RC1A 3WGYA 1QMIA 2PKQO 3TW3A 3WGQA 3WYCA 4MVJA 3DBVO 1BRMA 1TA4A 1UYJA 3INGA 1DBVO 3KGDA 1I72B 3BTUA 3DZ5B 1F06A 3IWBB 1NVMB 5KVSA 3E1KA 4DIBA 1YDWA 3I23A 2Q4EA 1P9LA 3LC7O 1JENB 1YL5A 3NTQA 3F4LA 2POQX 3QY9A 1DSSG 2VYNA 1NPTO 5KVQA 2DPGA 4II7A 3DZ6B 2I3AA 4MIEA 1YS4A 3GFGA 4O8JA 3K9QO 2HJSA 3UW3A 3OQBA 3M2TA 4XB1A 5BNTA 1H9AA 1YL6A 4IQ0A 5GZ3A 3DO5A 1I33A 5A04A 1LA2A 1OFGA 1YL7A 3PWKA 1MHMB 1TB4A 3KSZO 4XB2A 5C7LO 3TV1A 4QX6A 1RM3A 2O4UX 1RM4A 4R5HA 1GCUA 5AVOA 3NT4A 3WYBA 2G82A 1A7KA 4DPMA 2PKQP 1P1KA 1OZAA 1NWCA 1EBUA 4GMGA
chains in the Genus database with same CATH topology
3EP4A 1JL0A 1I7CA 3EP4B 1I7CB 1I7MA 3EP3B 3EP3A 5TVOA 5TVOB 1I7MB 3DZ6A 1I72B 1I72A 3DZ5B 3DZ6B 3DZ5A 1I7BB 1I7BA 3EP5B 3EP5A 3H0WA 3H0WB 1MSVA 3EPBA 3EPBB 3DZ4A 3DZ3A 3DZ4B 1TLUA 1VR7A 3DZ3B 1TMIA 3EP6B 1I79B 1I79A 3EP9B 3EP6A 3EP8B 3EPAA 3EP8A 3EP9A 3H0VB 3H0VA 2IIIA 3EPAB 3DZ2A 3DZ7B 3DZ7A 3DZ2B 3EP7B 1JENB 1JENA 3EP7A 1MHMB 1MHMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EP4 B;  1I7C B;  3EP3 B;  5TVO B;  1I7M B;  3DZ5 B;  1I72 B;  3DZ6 B;  1I7B B;  3EP5 B;  3H0W B;  3EPB B;  3DZ4 B;  3DZ3 B;  3EP6 B;  1I79 B;  3EP9 B;  3H0V B;  3EP8 B;  3EPA B;  3DZ7 B;  3DZ2 B;  3EP7 B;  1JEN B;  1MHM B; 
#chains in the Genus database with same CATH topology
 2GLX A;  3B20 A;  3EP3 B;  4XRG A;  3ZDF A;  5JYF A;  3PZB A;  3WB9 A;  2X5J O;  3EZY A;  4TVB A;  4FB5 A;  4NHE A;  2GYY A;  1P1I A;  1DRU A;  3PYL A;  3TZ6 A;  2O48 X;  3GPD G;  5JW6 A;  4R41 A;  2B4T O;  2X5K O;  3RCB A;  2D2I A;  2DC1 A;  5A02 A;  1VSU A;  2CZC A;  4MVJ D;  1XYG A;  3CIF A;  3VOS A;  4R4J A;  4XQ9 A;  3IJP A;  1I7B B;  4PG4 A;  4R3W A;  3EPB B;  3K2B A;  4LGV A;  4R3N A;  2AXQ A;  1IHX A;  3PFW O;  2Q22 A;  2GZ2 A;  1GD1 O;  1K3T A;  1U8F O;  1DRW A;  3H0V B;  4R5M A;  3E5R A;  1ARZ A;  3EPA B;  5JYA A;  3GNQ A;  3KSD O;  5EIO A;  3QVW A;  1VM6 A;  3PWS A;  5A05 A;  1GL3 A;  2VYN D;  2R00 C;  3Q11 A;  2PH5 A;  1LC0 A;  4ZIC A;  3IWD B;  3L6O O;  2P2S A;  2HO5 A;  4KOA A;  1U1I A;  3KV3 O;  1H6A A;  1CF2 O;  3E6A A;  2IXA A;  4MVJ H;  3MZ0 A;  2XF8 A;  4MVJ I;  1H6C A;  3ABI A;  2YV3 A;  3MOI A;  2EP7 A;  3HNP A;  4K9D A;  5A03 A;  4YDR A;  1QXS A;  3CMC O;  1GAD O;  3EP7 B;  2I5P O;  1H6D A;  4MIN A;  3RC9 A;  1E5Q A;  4XR4 A;  1I7M B;  3C1A A;  3IDS A;  3KUX A;  2IXB A;  1PR3 A;  1DC3 A;  1PU2 A;  3DR3 A;  1Q7G A;  3E18 A;  5T73 A;  3OA0 A;  1P1H A;  1JKF A;  1Q2X A;  2GD1 O;  3EVN A;  2FPN A;  1GPD G;  3NTO A;  5JYE A;  3OA2 A;  2R00 A;  4WOJ A;  4MVJ E;  1T4D A;  4P8R A;  1LC3 A;  4BOY A;  1NBO A;  3EP8 B;  1YWG O;  2B4R O;  3V2U A;  3DOC A;  4LSM A;  3QVT A;  4INA A;  1PS8 A;  2VYV A;  2Q49 A;  2GZ1 A;  2QZ9 A;  1SZJ G;  1H6B A;  3WBB A;  4LRT B;  1EVJ A;  3QW2 A;  4PG5 A;  3UUW A;  3L4S O;  1GR0 A;  4AK1 A;  3DAP A;  4PLP A;  1PQU A;  4PG7 A;  1RM0 A;  1TLT A;  3DB2 A;  3Q0E A;  1DC5 A;  1J5P A;  3Q1L A;  1B7G O;  1DIH A;  1TVE A;  3HQ4 O;  1I7C B;  4L9R A;  1GYQ A;  5TVO B;  3WGZ A;  3C8M A;  5C7O O;  2DUU A;  1JN0 A;  3IWC B;  5M6D A;  3EP5 B;  4MIO A;  1IHY A;  3DZ4 B;  4O63 O;  2YYY A;  3EP6 B;  1C3V A;  1VKO A;  3OHS X;  2DBV O;  3QVS A;  3GDO A;  1NQA O;  3ZCX A;  3FHL A;  3EP4 B;  1DC4 A;  2PKR A;  4LRS B;  1H93 A;  4MKZ A;  2DAP A;  1E77 A;  5J9G A;  5GZ1 A;  5JY6 A;  2BH9 A;  3TUT A;  1GYP A;  3H0W B;  2EJW A;  1QKI A;  4XQC A;  4MKX A;  5A06 A;  4WNC A;  3DZ7 B;  3BIO A;  4MVJ P;  4R54 A;  4RL6 A;  2OZP A;  4MVJ F;  4Z0H O;  3DMT C;  1DPG A;  3E82 A;  4GPD 1;  1VSV A;  3EC7 A;  4ZHS A;  1MB4 A;  3MTJ A;  1ML3 A;  4MIY A;  1QMH A;  3PQV A;  4DBV O;  3QVX A;  1OBF O;  1CRW G;  3K73 O;  4IQ8 A;  1XEA A;  1PQP A;  5EIN A;  3CIN A;  3FD8 A;  3STH A;  4MVJ M;  3BTS A;  3U3X A;  3CEA A;  5C7I O;  4WNI A;  4DPL A;  1J0X O;  3LC2 O;  3VAZ A;  3PYX A;  1CER A;  1H2H A;  2VYV D;  3RVD A;  1S7C A;  5DDI P;  3JSA A;  1GAE O;  5GZ6 A;  1RM5 A;  4R51 A;  1ZH8 A;  3PYM A;  1FF9 A;  1VKN A;  3LVF O;  4GQA A;  1NWH A;  2I3G A;  3V5N A;  3DTY A;  3DZ2 B;  3NT5 A;  4JN6 B;  4F3Y A;  1DAP A;  1MC4 A;  3O9Z A;  1DRV A;  3QV1 A;  5CEF A;  3NTR A;  4XQE A;  1I32 A;  2NVW A;  3WGO A;  3DMT A;  1ZNQ O;  5EES A;  1JKI A;  3HJA A;  3DZ3 B;  2H63 A;  3B1K A;  1NQ5 A;  3EP9 B;  4HKT A;  4PG6 A;  3RBV A;  2EP5 A;  1HDG O;  1E7M A;  3PZR A;  3RC2 A;  1NQO A;  3NT2 A;  2G17 A;  1NX6 A;  4YWJ A;  2BHL A;  2X0N A;  4L8V A;  4MJL A;  4H3V A;  1T4B A;  3ZJX A;  4O89 A;  5EER A;  4GMF A;  1H94 A;  1P1J A;  3WBF A;  4EW6 A;  3CPS A;  1RYD A;  3HSK A;  3E9M A;  3V1Y A;  3RC7 A;  5AQ1 A;  3B1J A;  1RYE A;  4XQG A;  1P1F A;  1EBF A;  1VC2 A;  3LC1 O;  3Q2I A;  4N54 A;  3HXL A;  4O59 O;  2CVO A;  3H9E O;  4DPK A;  1H9B A;  4CLQ A;  1DC6 A;  2NQT A;  3L0D A;  3BTV A;  4PG8 A;  1E7Y A;  4HAD A;  1I79 B;  1E5L A;  3EUW A;  2HKI A;  3TUX A;  3Q2K A;  2GZ3 A;  3IP3 A;  4MVJ G;  3RC1 A;  3WGY A;  1QMI A;  2PKQ O;  3TW3 A;  3WGQ A;  3WYC A;  4MVJ A;  3DBV O;  1BRM A;  1TA4 A;  1UYJ A;  3ING A;  1DBV O;  3KGD A;  1I72 B;  3BTU A;  3DZ5 B;  1F06 A;  3IWB B;  1NVM B;  5KVS A;  3E1K A;  4DIB A;  1YDW A;  3I23 A;  2Q4E A;  1P9L A;  3LC7 O;  1JEN B;  1YL5 A;  3NTQ A;  3F4L A;  2POQ X;  3QY9 A;  1DSS G;  2VYN A;  1NPT O;  5KVQ A;  2DPG A;  4II7 A;  3DZ6 B;  2I3A A;  4MIE A;  1YS4 A;  3GFG A;  4O8J A;  3K9Q O;  2HJS A;  3UW3 A;  3OQB A;  3M2T A;  4XB1 A;  5BNT A;  1H9A A;  1YL6 A;  4IQ0 A;  5GZ3 A;  3DO5 A;  1I33 A;  5A04 A;  1LA2 A;  1OFG A;  1YL7 A;  3PWK A;  1MHM B;  1TB4 A;  3KSZ O;  4XB2 A;  5C7L O;  3TV1 A;  4QX6 A;  1RM3 A;  2O4U X;  1RM4 A;  4R5H A;  1GCU A;  5AVO A;  3NT4 A;  3WYB A;  2G82 A;  1A7K A;  4DPM A;  2PKQ P;  1P1K A;  1OZA A;  1NWC A;  1EBU A;  4GMG A; 
#chains in the Genus database with same CATH homology
 3EP4 A;  1JL0 A;  1I7C A;  3EP4 B;  1I7C B;  1I7M A;  3EP3 B;  3EP3 A;  5TVO A;  5TVO B;  1I7M B;  3DZ6 A;  1I72 B;  1I72 A;  3DZ5 B;  3DZ6 B;  3DZ5 A;  1I7B B;  1I7B A;  3EP5 B;  3EP5 A;  3H0W A;  3H0W B;  1MSV A;  3EPB A;  3EPB B;  3DZ4 A;  3DZ3 A;  3DZ4 B;  1TLU A;  1VR7 A;  3DZ3 B;  1TMI A;  3EP6 B;  1I79 B;  1I79 A;  3EP9 B;  3EP6 A;  3EP8 B;  3EPA A;  3EP8 A;  3EP9 A;  3H0V B;  3H0V A;  2III A;  3EPA B;  3DZ2 A;  3DZ7 B;  3DZ7 A;  3DZ2 B;  3EP7 B;  1JEN B;  1JEN A;  3EP7 A;  1MHM B;  1MHM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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