3DZ3A

Human adometdc f223a mutant with covalently bound s-adenosylmethionine methyl ester
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
260
structure length
244
Chain Sequence
SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPEQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMANPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQQKIEGFKRLDCQSAMFNDYNFVFTSFAKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase beta chain
publication title New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C8 Substitution in Structural Analogues of S-Adenosylmethionine
pubmed doi rcsb
source organism Homo sapiens
total genus 56
structure length 244
sequence length 260
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2008-07-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.90.10 Alpha Beta 4-Layer Sandwich S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase 3dz3A00
5TVOA 1JENA 3EP3A 3EP9A 3DZ7A 1TLUA 3H0VA 3EPAA 1VR7A 3EP8A 3H0WA 1TMIA 3DZ5A 1MHMA 1MSVA 1I7BA 3EP6A 3DZ3A 3DZ4A 3EP4A 3DZ2A 1I79A 1JL0A 3EPBA 3EP5A 3DZ6A 1I7MA 2IIIA 1I72A 1I7CA 3EP7A
chains in the Genus database with same CATH superfamily
5TVOA 1JENA 3EP3A 3EP9A 3DZ7A 1TLUA 3H0VA 3EPAA 1VR7A 3EP8A 3H0WA 1TMIA 3DZ5A 1MHMA 1MSVA 1I7BA 3EP6A 3DZ3A 3DZ4A 3EP4A 3DZ2A 1I79A 1JL0A 3EPBA 3EP5A 3DZ6A 1I7MA 2IIIA 1I72A 1I7CA 3EP7A
chains in the Genus database with same CATH topology
1I79B 3DZ6B 5TVOA 1I7MB 1JENA 3EPBB 3EP3A 3EP9A 3DZ7A 1I72B 1I7CB 3EP7B 1TLUA 3H0VA 5TVOB 3EPAA 1JENB 3DZ2B 3EP3B 1VR7A 3DZ7B 3EP9B 3EP8A 3H0WA 1TMIA 3H0VB 3EPAB 3DZ5A 3EP8B 1MHMA 3H0WB 1MSVA 1I7BA 3EP6A 3DZ3A 3DZ5B 3DZ4A 3EP4A 1MHMB 3DZ2A 1I79A 1JL0A 3EP6B 3EP5A 3DZ3B 3EPBA 3DZ6A 1I7BB 1I7MA 3DZ4B 3EP4B 2IIIA 1I72A 1I7CA 3EP7A 3EP5B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5TVO A;  1JEN A;  3EP3 A;  3EP9 A;  3DZ7 A;  1TLU A;  3H0V A;  3EPA A;  1VR7 A;  3EP8 A;  3H0W A;  1TMI A;  3DZ5 A;  1MHM A;  1MSV A;  1I7B A;  3EP6 A;  3DZ3 A;  3DZ4 A;  3EP4 A;  3DZ2 A;  1I79 A;  1JL0 A;  3EPB A;  3EP5 A;  3DZ6 A;  1I7M A;  2III A;  1I72 A;  1I7C A;  3EP7 A; 
#chains in the Genus database with same CATH topology
 5TVO A;  1JEN A;  3EP3 A;  3EP9 A;  3DZ7 A;  1TLU A;  3H0V A;  3EPA A;  1VR7 A;  3EP8 A;  3H0W A;  1TMI A;  3DZ5 A;  1MHM A;  1MSV A;  1I7B A;  3EP6 A;  3DZ3 A;  3DZ4 A;  3EP4 A;  3DZ2 A;  1I79 A;  1JL0 A;  3EPB A;  3EP5 A;  3DZ6 A;  1I7M A;  2III A;  1I72 A;  1I7C A;  3EP7 A; 
#chains in the Genus database with same CATH homology
 1I79 B;  3DZ6 B;  5TVO A;  1I7M B;  1JEN A;  3EPB B;  3EP3 A;  3EP9 A;  3DZ7 A;  1I72 B;  1I7C B;  3EP7 B;  1TLU A;  3H0V A;  5TVO B;  3EPA A;  1JEN B;  3DZ2 B;  3EP3 B;  1VR7 A;  3DZ7 B;  3EP9 B;  3EP8 A;  3H0W A;  1TMI A;  3H0V B;  3EPA B;  3DZ5 A;  3EP8 B;  1MHM A;  3H0W B;  1MSV A;  1I7B A;  3EP6 A;  3DZ3 A;  3DZ5 B;  3DZ4 A;  3EP4 A;  1MHM B;  3DZ2 A;  1I79 A;  1JL0 A;  3EP6 B;  3EP5 A;  3DZ3 B;  3EPB A;  3DZ6 A;  1I7B B;  1I7M A;  3DZ4 B;  3EP4 B;  2III A;  1I72 A;  1I7C A;  3EP7 A;  3EP5 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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