3E0HA

Crystal structure of an uncharacterized protein from chlorobium tepidum. northeast structural genomics target ctr107.
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
153
structure length
153
Chain Sequence
QFVCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKSPSGPPFARYFGMSAGTFEVEFGFPVEGGVEGSGRVVTGLTPSGKAASSLYIGPYGEIEAVYDALMKWVDDNGFDLSGEAYEIYLDNPAETAPDQLRTRVSLMLHES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords uncharacterized protein
publication title Crystal structure of an uncharacterized protein from Chlorobium tepidum. NorthEast Structural Genomics target CtR107.
rcsb
source organism Chlorobaculum tepidum
total genus 36
structure length 153
sequence length 153
ec nomenclature
pdb deposition date 2008-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF06445 GyrI-like GyrI-like small molecule binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A Regulatory factor, effector binding domain 3e0hA00
5KAXA 3R8JA 4A1MA 3Q3DA 3Q2YA 3Q1MA 1EXIA 2GOVA 3D71A 1JYHA 5KAVA 4AYZA 3D70A 1EXJA 3D6ZA 5KAWA 2BOWA 3B49A 3R8KA 2KCUA 5KCBA 3GK6A 5KATA 1BOWA 3Q5SA 2HVAA 3IAOA 3Q5PA 5KAUA 1R8EA 3D6YA 3LURA 3E0HA 4AYZB 1D5YA 5GQQA 4B0YA 3Q5RA
chains in the Genus database with same CATH superfamily
5KAXA 3R8JA 4A1MA 3Q3DA 3Q2YA 3Q1MA 1EXIA 2GOVA 3D71A 1JYHA 5KAVA 4AYZA 3D70A 1EXJA 3D6ZA 5KAWA 2BOWA 3B49A 3R8KA 2KCUA 5KCBA 3GK6A 5KATA 1BOWA 3Q5SA 2HVAA 3IAOA 3Q5PA 5KAUA 1R8EA 3D6YA 3LURA 3E0HA 4AYZB 1D5YA 5GQQA 4B0YA 3Q5RA
chains in the Genus database with same CATH topology
5KAXA 3R8JA 4A1MA 3Q3DA 3Q2YA 3Q1MA 1EXIA 2GOVA 3D71A 1JYHA 5KAVA 4AYZA 3D70A 1EXJA 3D6ZA 5KAWA 2BOWA 3B49A 3R8KA 2KCUA 5KCBA 3GK6A 5KATA 1BOWA 3Q5SA 2HVAA 3IAOA 3Q5PA 5KAUA 1R8EA 3D6YA 3LURA 3E0HA 4AYZB 1D5YA 5GQQA 4B0YA 3Q5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KAX A;  3R8J A;  4A1M A;  3Q3D A;  3Q2Y A;  3Q1M A;  1EXI A;  2GOV A;  3D71 A;  1JYH A;  5KAV A;  4AYZ A;  3D70 A;  1EXJ A;  3D6Z A;  5KAW A;  2BOW A;  3B49 A;  3R8K A;  2KCU A;  5KCB A;  3GK6 A;  5KAT A;  1BOW A;  3Q5S A;  2HVA A;  3IAO A;  3Q5P A;  5KAU A;  1R8E A;  3D6Y A;  3LUR A;  3E0H A;  4AYZ B;  1D5Y A;  5GQQ A;  4B0Y A;  3Q5R A; 
#chains in the Genus database with same CATH topology
 5KAX A;  3R8J A;  4A1M A;  3Q3D A;  3Q2Y A;  3Q1M A;  1EXI A;  2GOV A;  3D71 A;  1JYH A;  5KAV A;  4AYZ A;  3D70 A;  1EXJ A;  3D6Z A;  5KAW A;  2BOW A;  3B49 A;  3R8K A;  2KCU A;  5KCB A;  3GK6 A;  5KAT A;  1BOW A;  3Q5S A;  2HVA A;  3IAO A;  3Q5P A;  5KAU A;  1R8E A;  3D6Y A;  3LUR A;  3E0H A;  4AYZ B;  1D5Y A;  5GQQ A;  4B0Y A;  3Q5R A; 
#chains in the Genus database with same CATH homology
 5KAX A;  3R8J A;  4A1M A;  3Q3D A;  3Q2Y A;  3Q1M A;  1EXI A;  2GOV A;  3D71 A;  1JYH A;  5KAV A;  4AYZ A;  3D70 A;  1EXJ A;  3D6Z A;  5KAW A;  2BOW A;  3B49 A;  3R8K A;  2KCU A;  5KCB A;  3GK6 A;  5KAT A;  1BOW A;  3Q5S A;  2HVA A;  3IAO A;  3Q5P A;  5KAU A;  1R8E A;  3D6Y A;  3LUR A;  3E0H A;  4AYZ B;  1D5Y A;  5GQQ A;  4B0Y A;  3Q5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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