3E0OA

Crystal structure of msrb
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
142
structure length
142
Chain Sequence
MMAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPKHKLKEEGYESYLHLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Peptide methionine sulfoxide reductase msrB
publication title Structural and Kinetic Analysis of an MsrA-MsrB Fusion Protein from Streptococcus pneumoniae
pubmed doi rcsb
source organism Bacillus subtilis
total genus 40
structure length 142
sequence length 142
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.8.4.12: Peptide-methionine (R)-S-oxide reductase.
pdb deposition date 2008-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01641 SelR SelR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.20 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Peptide methionine sulfoxide reductase. 3e0oA00
4V30A 3E0OA 3WX1A 2KV1A 2K8DA 4CI1B 3CXKA 3CEZA 1L1DA 4CI2B 2KZNA 4V31A 4CI3B 3MAOA 3HCJA 3HCGA 5AMHA 3WX2A 4TZUA 4V2YA 4V2ZA 3HCHA 3HCIA 4TZ4C 4TZCA 3E0MA
chains in the Genus database with same CATH superfamily
1HXRA 1TXJA 5F9FA 3OG8A 4V30A 2YKGA 1H7YA 1YZ1A 5F98A 2RQAA 3E0OA 3WX1A 4AY2A 2KV1A 2K8DA 3EBMA 1H6QA 4CI1B 2LVLA 3CXKA 3FACA 3DJMA 4A2VA 3CEZA 3ZD7A 1L1DA 4CI2B 3LRRA 2KZNA 4V31A 2RMJA 4CI3B 3MAOA 5E3HA 3HCJA 3NCUA 2KWBA 2RQBA 3HCGA 5AMHA 2QFDA 2W4RA 3WX2A 4TZUA 3EQTA 3GA3A 4V2YA 2FU5A 4V2ZA 2LOYA 3HCHA 3LRNA 4A2XA 2QFBA 3HCIA 4BPBA 4TZ4C 3ZD6A 5F9HA 3P3KA 4TZCA 1FWQA 2HR9A 3E0MA
chains in the Genus database with same CATH topology
4V30A 3E0OA 3WX1A 2KV1A 2K8DA 4CI1B 3CXKA 3CEZA 1L1DA 4CI2B 2KZNA 4V31A 4CI3B 3MAOA 3HCJA 3HCGA 5AMHA 3WX2A 4TZUA 4V2YA 4V2ZA 3HCHA 3HCIA 4TZ4C 4TZCA 3E0MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V30 A;  3E0O A;  3WX1 A;  2KV1 A;  2K8D A;  4CI1 B;  3CXK A;  3CEZ A;  1L1D A;  4CI2 B;  2KZN A;  4V31 A;  4CI3 B;  3MAO A;  3HCJ A;  3HCG A;  5AMH A;  3WX2 A;  4TZU A;  4V2Y A;  4V2Z A;  3HCH A;  3HCI A;  4TZ4 C;  4TZC A;  3E0M A; 
#chains in the Genus database with same CATH topology
 1HXR A;  1TXJ A;  5F9F A;  3OG8 A;  4V30 A;  2YKG A;  1H7Y A;  1YZ1 A;  5F98 A;  2RQA A;  3E0O A;  3WX1 A;  4AY2 A;  2KV1 A;  2K8D A;  3EBM A;  1H6Q A;  4CI1 B;  2LVL A;  3CXK A;  3FAC A;  3DJM A;  4A2V A;  3CEZ A;  3ZD7 A;  1L1D A;  4CI2 B;  3LRR A;  2KZN A;  4V31 A;  2RMJ A;  4CI3 B;  3MAO A;  5E3H A;  3HCJ A;  3NCU A;  2KWB A;  2RQB A;  3HCG A;  5AMH A;  2QFD A;  2W4R A;  3WX2 A;  4TZU A;  3EQT A;  3GA3 A;  4V2Y A;  2FU5 A;  4V2Z A;  2LOY A;  3HCH A;  3LRN A;  4A2X A;  2QFB A;  3HCI A;  4BPB A;  4TZ4 C;  3ZD6 A;  5F9H A;  3P3K A;  4TZC A;  1FWQ A;  2HR9 A;  3E0M A; 
#chains in the Genus database with same CATH homology
 4V30 A;  3E0O A;  3WX1 A;  2KV1 A;  2K8D A;  4CI1 B;  3CXK A;  3CEZ A;  1L1D A;  4CI2 B;  2KZN A;  4V31 A;  4CI3 B;  3MAO A;  3HCJ A;  3HCG A;  5AMH A;  3WX2 A;  4TZU A;  4V2Y A;  4V2Z A;  3HCH A;  3HCI A;  4TZ4 C;  4TZC A;  3E0M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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