3E4VA

Crystal structure of nadh:fmn oxidoreductase like protein in complex with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a resolution
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
179
structure length
179
Chain Sequence
NELPPENAYRILESGPIVLVSTRGADGRANLMTMGFHMMMQHEPPLVGAIIGPWDYSHQALSETGECVLAVPTVDLAETVVDIGNCSGDALDKFGHFGLTPVPAQTVDAPLVRQCWANLECRVVDDGWARRYNLWVLEVQRIWIDTARKETRLIHHQGDGRFSVDGDTLDLGERMTKWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of NADH:FMN oxidoreductase like protein in complex with FMN (YP_544701.1) from METHYLOBACILLUS FLAGELLATUS KT at 1.40 A resolution
rcsb
molecule tags Flavoprotein
source organism Methylobacillus flagellatus kt
molecule keywords NADH:FMN oxidoreductase like protein
total genus 44
structure length 179
sequence length 179
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3e4vA01
1USFA 4L82A 4HMXA 2GJGA 2Q9KA 1USCA 3R5RA 3ZOFA 2A2JA 1W9AA 1DNLA 4Y9IA 2IMLA 4YWNA 1W3QA 3FKHA 1G76A 2ED4A 3R5ZA 1YLNA 2OU5A 4HX6A 3K86A 3BA3A 1WLIA 2ARZA 1NRGA 3ZOGA 1XXOA 2FURA 1T9MA 1I0RA 2RE7A 3E4VA 3HY8A 3PFTA 5BNCA 1VL7A 3U34A 2X1JA 1CI0A 3VYAA 2RDEA 3K88A 5CHEC 1G78A 4HMUA 1Y30A 5CHOA 3AMFA 4HMWA 3HMZA 3A6QA 4YBNA 2HQ9A 1WV4A 3EC6A 4XHYA 4IRAA 3TGVA 2FHQA 4N7RC 2FG9A 3VY5A 3NFWA 2VPAA 2R0XA 1WGBA 2PTFA 2HTIA 2R6VA 1TY9A 3DB0A 1AXJA 4HMVA 1W3PA 5JABA 3CP3A 2X1KA 4R82A 2D5MA 1RZ0A 5ESCA 1I0SA 3U0IA 1W3RA 3F7EA 2HTDA 1FLMA 1RZ1A 3BPKA 3KYGA 3ZOHA 3ZOCA 1G77A 1EJEA 3DNHA 4HMTA 2I51A 4ZKYA 3DMBA 3GASA 3A20A 2AQ6A 2QEAA 3R5WA 2HQ7A 2D36A 2QCKA 3R5YA 2ASFA 3B5MA 3AWHA 3U5WA 3R5LA 3FGEA 3H96A 2NR4A 2D38A 2ECRA 2IABA 3U35A 1JNWA 1W3OA 4F07A 1YOAA 2OL5A 2E83A 3K87A 3RH7A 3CB0A 3SWJA 3ZODA 3BNKA 1XHNA 2IG6A 4XJ2A 2I02A 1RFEA 1WLKA 4Z85A 2ECUA 3A6RA 4HMSA 1G79A 3KYFA 4QVBA 3IN6A 3ZOEA 2HHZA 3VY2A 3R5PA 2D37A
chains in the Genus database with same CATH superfamily
1USFA 4L82A 4HMXA 2GJGA 4MTKA 2Q9KA 2L1TA 1USCA 3R5RA 3ZOFA 2P5ZX 2A2JA 4HKHA 1W9AA 1DNLA 4Y9IA 2IMLA 4YWNA 1W3QA 3FKHA 1G76A 2ED4A 3R5ZA 1YLNA 2OU5A 4HX6A 3K86A 3BA3A 1WLIA 2ARZA 1NRGA 3ZOGA 1XXOA 2FURA 1T9MA 1I0RA 2RE7A 3E4VA 3HY8A 3PFTA 5BNCA 1VL7A 3U34A 2X1JA 1CI0A 3VYAA 2RDEA 3K88A 5CHEC 1G78A 2GUJA 4HMUA 1Y30A 5CHOA 3AMFA 4HMWA 3HMZA 3A6QA 4YBNA 2HQ9A 1WV4A 3EC6A 4XHYA 4IRAA 4TV4A 2FHQA 3TGVA 4N7RC 2FG9A 3VY5A 3NFWA 3V4HA 2VPAA 2R0XA 1WGBA 2PTFA 2HTIA 2R6VA 1TY9A 3DB0A 1AXJA 4HMVA 1W3PA 4W64A 5JABA 3CP3A 2X1KA 4R82A 2D5MA 1RZ0A 5ESCA 1I0SA 3U0IA 1W3RA 3F7EA 2HTDA 1FLMA 1RZ1A 3BPKA 3KYGA 3ZOHA 3ZOCA 1Y12A 1G77A 1EJEA 3DNHA 4HMTA 2I51A 4ZKYA 3DMBA 3GASA 3HE1A 4UHVA 3A20A 2AQ6A 2QEAA 3R5WA 2HQ7A 2D36A 2K4QA 2QCKA 3R5YA 2ASFA 3B5MA 3AWHA 3U5WA 3R5LA 3FGEA 3H96A 2NR4A 2D38A 2ECRA 2IABA 3U35A 1JNWA 1W3OA 4F07A 1YOAA 2OL5A 2E83A 3EAAA 3K87A 3RH7A 3CB0A 3SWJA 3ZODA 3BNKA 1XHNA 2IG6A 4XJ2A 2I02A 1RFEA 1WLKA 4Z85A 2ECUA 3A6RA 4HMSA 1G79A 3KYFA 4QVBA 3IN6A 3ZOEA 2HHZA 3VY2A 3R5PA 2D37A
chains in the Genus database with same CATH topology
1USFA 4L82A 4HMXA 2GJGA 2Q9KA 1USCA 3R5RA 3ZOFA 2A2JA 1W9AA 1DNLA 4Y9IA 2IMLA 4YWNA 1W3QA 3FKHA 1G76A 2ED4A 3R5ZA 1YLNA 2OU5A 4HX6A 3K86A 3BA3A 1WLIA 2ARZA 1NRGA 3ZOGA 1XXOA 2FURA 1T9MA 1I0RA 2RE7A 3E4VA 3HY8A 3PFTA 5BNCA 1VL7A 3U34A 2X1JA 1CI0A 3VYAA 2RDEA 3K88A 5CHEC 1G78A 4HMUA 1Y30A 5CHOA 3AMFA 4HMWA 3HMZA 3A6QA 4YBNA 2HQ9A 1WV4A 3EC6A 4XHYA 4IRAA 3TGVA 2FHQA 4N7RC 2FG9A 3VY5A 3NFWA 2VPAA 2R0XA 1WGBA 2PTFA 2HTIA 2R6VA 1TY9A 3DB0A 1AXJA 4HMVA 1W3PA 5JABA 3CP3A 2X1KA 4R82A 2D5MA 1RZ0A 5ESCA 1I0SA 3U0IA 1W3RA 3F7EA 2HTDA 1FLMA 1RZ1A 3BPKA 3KYGA 3ZOHA 3ZOCA 1G77A 1EJEA 3DNHA 4HMTA 2I51A 4ZKYA 3DMBA 3GASA 3A20A 2AQ6A 2QEAA 3R5WA 2HQ7A 2D36A 2QCKA 3R5YA 2ASFA 3B5MA 3AWHA 3U5WA 3R5LA 3FGEA 3H96A 2NR4A 2D38A 2ECRA 2IABA 3U35A 1JNWA 1W3OA 4F07A 1YOAA 2OL5A 2E83A 3K87A 3RH7A 3CB0A 3SWJA 3ZODA 3BNKA 1XHNA 2IG6A 4XJ2A 2I02A 1RFEA 1WLKA 4Z85A 2ECUA 3A6RA 4HMSA 1G79A 3KYFA 4QVBA 3IN6A 3ZOEA 2HHZA 3VY2A 3R5PA 2D37A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1USF A;  4L82 A;  4HMX A;  2GJG A;  2Q9K A;  1USC A;  3R5R A;  3ZOF A;  2A2J A;  1W9A A;  1DNL A;  4Y9I A;  2IML A;  4YWN A;  1W3Q A;  3FKH A;  1G76 A;  2ED4 A;  3R5Z A;  1YLN A;  2OU5 A;  4HX6 A;  3K86 A;  3BA3 A;  1WLI A;  2ARZ A;  1NRG A;  3ZOG A;  1XXO A;  2FUR A;  1T9M A;  1I0R A;  2RE7 A;  3E4V A;  3HY8 A;  3PFT A;  5BNC A;  1VL7 A;  3U34 A;  2X1J A;  1CI0 A;  3VYA A;  2RDE A;  3K88 A;  5CHE C;  1G78 A;  4HMU A;  1Y30 A;  5CHO A;  3AMF A;  4HMW A;  3HMZ A;  3A6Q A;  4YBN A;  2HQ9 A;  1WV4 A;  3EC6 A;  4XHY A;  4IRA A;  3TGV A;  2FHQ A;  4N7R C;  2FG9 A;  3VY5 A;  3NFW A;  2VPA A;  2R0X A;  1WGB A;  2PTF A;  2HTI A;  2R6V A;  1TY9 A;  3DB0 A;  1AXJ A;  4HMV A;  1W3P A;  5JAB A;  3CP3 A;  2X1K A;  4R82 A;  2D5M A;  1RZ0 A;  5ESC A;  1I0S A;  3U0I A;  1W3R A;  3F7E A;  2HTD A;  1FLM A;  1RZ1 A;  3BPK A;  3KYG A;  3ZOH A;  3ZOC A;  1G77 A;  1EJE A;  3DNH A;  4HMT A;  2I51 A;  4ZKY A;  3DMB A;  3GAS A;  3A20 A;  2AQ6 A;  2QEA A;  3R5W A;  2HQ7 A;  2D36 A;  2QCK A;  3R5Y A;  2ASF A;  3B5M A;  3AWH A;  3U5W A;  3R5L A;  3FGE A;  3H96 A;  2NR4 A;  2D38 A;  2ECR A;  2IAB A;  3U35 A;  1JNW A;  1W3O A;  4F07 A;  1YOA A;  2OL5 A;  2E83 A;  3K87 A;  3RH7 A;  3CB0 A;  3SWJ A;  3ZOD A;  3BNK A;  1XHN A;  2IG6 A;  4XJ2 A;  2I02 A;  1RFE A;  1WLK A;  4Z85 A;  2ECU A;  3A6R A;  4HMS A;  1G79 A;  3KYF A;  4QVB A;  3IN6 A;  3ZOE A;  2HHZ A;  3VY2 A;  3R5P A;  2D37 A; 
#chains in the Genus database with same CATH topology
 1USF A;  4L82 A;  4HMX A;  2GJG A;  4MTK A;  2Q9K A;  2L1T A;  1USC A;  3R5R A;  3ZOF A;  2P5Z X;  2A2J A;  4HKH A;  1W9A A;  1DNL A;  4Y9I A;  2IML A;  4YWN A;  1W3Q A;  3FKH A;  1G76 A;  2ED4 A;  3R5Z A;  1YLN A;  2OU5 A;  4HX6 A;  3K86 A;  3BA3 A;  1WLI A;  2ARZ A;  1NRG A;  3ZOG A;  1XXO A;  2FUR A;  1T9M A;  1I0R A;  2RE7 A;  3E4V A;  3HY8 A;  3PFT A;  5BNC A;  1VL7 A;  3U34 A;  2X1J A;  1CI0 A;  3VYA A;  2RDE A;  3K88 A;  5CHE C;  1G78 A;  2GUJ A;  4HMU A;  1Y30 A;  5CHO A;  3AMF A;  4HMW A;  3HMZ A;  3A6Q A;  4YBN A;  2HQ9 A;  1WV4 A;  3EC6 A;  4XHY A;  4IRA A;  4TV4 A;  2FHQ A;  3TGV A;  4N7R C;  2FG9 A;  3VY5 A;  3NFW A;  3V4H A;  2VPA A;  2R0X A;  1WGB A;  2PTF A;  2HTI A;  2R6V A;  1TY9 A;  3DB0 A;  1AXJ A;  4HMV A;  1W3P A;  4W64 A;  5JAB A;  3CP3 A;  2X1K A;  4R82 A;  2D5M A;  1RZ0 A;  5ESC A;  1I0S A;  3U0I A;  1W3R A;  3F7E A;  2HTD A;  1FLM A;  1RZ1 A;  3BPK A;  3KYG A;  3ZOH A;  3ZOC A;  1Y12 A;  1G77 A;  1EJE A;  3DNH A;  4HMT A;  2I51 A;  4ZKY A;  3DMB A;  3GAS A;  3HE1 A;  4UHV A;  3A20 A;  2AQ6 A;  2QEA A;  3R5W A;  2HQ7 A;  2D36 A;  2K4Q A;  2QCK A;  3R5Y A;  2ASF A;  3B5M A;  3AWH A;  3U5W A;  3R5L A;  3FGE A;  3H96 A;  2NR4 A;  2D38 A;  2ECR A;  2IAB A;  3U35 A;  1JNW A;  1W3O A;  4F07 A;  1YOA A;  2OL5 A;  2E83 A;  3EAA A;  3K87 A;  3RH7 A;  3CB0 A;  3SWJ A;  3ZOD A;  3BNK A;  1XHN A;  2IG6 A;  4XJ2 A;  2I02 A;  1RFE A;  1WLK A;  4Z85 A;  2ECU A;  3A6R A;  4HMS A;  1G79 A;  3KYF A;  4QVB A;  3IN6 A;  3ZOE A;  2HHZ A;  3VY2 A;  3R5P A;  2D37 A; 
#chains in the Genus database with same CATH homology
 1USF A;  4L82 A;  4HMX A;  2GJG A;  2Q9K A;  1USC A;  3R5R A;  3ZOF A;  2A2J A;  1W9A A;  1DNL A;  4Y9I A;  2IML A;  4YWN A;  1W3Q A;  3FKH A;  1G76 A;  2ED4 A;  3R5Z A;  1YLN A;  2OU5 A;  4HX6 A;  3K86 A;  3BA3 A;  1WLI A;  2ARZ A;  1NRG A;  3ZOG A;  1XXO A;  2FUR A;  1T9M A;  1I0R A;  2RE7 A;  3E4V A;  3HY8 A;  3PFT A;  5BNC A;  1VL7 A;  3U34 A;  2X1J A;  1CI0 A;  3VYA A;  2RDE A;  3K88 A;  5CHE C;  1G78 A;  4HMU A;  1Y30 A;  5CHO A;  3AMF A;  4HMW A;  3HMZ A;  3A6Q A;  4YBN A;  2HQ9 A;  1WV4 A;  3EC6 A;  4XHY A;  4IRA A;  3TGV A;  2FHQ A;  4N7R C;  2FG9 A;  3VY5 A;  3NFW A;  2VPA A;  2R0X A;  1WGB A;  2PTF A;  2HTI A;  2R6V A;  1TY9 A;  3DB0 A;  1AXJ A;  4HMV A;  1W3P A;  5JAB A;  3CP3 A;  2X1K A;  4R82 A;  2D5M A;  1RZ0 A;  5ESC A;  1I0S A;  3U0I A;  1W3R A;  3F7E A;  2HTD A;  1FLM A;  1RZ1 A;  3BPK A;  3KYG A;  3ZOH A;  3ZOC A;  1G77 A;  1EJE A;  3DNH A;  4HMT A;  2I51 A;  4ZKY A;  3DMB A;  3GAS A;  3A20 A;  2AQ6 A;  2QEA A;  3R5W A;  2HQ7 A;  2D36 A;  2QCK A;  3R5Y A;  2ASF A;  3B5M A;  3AWH A;  3U5W A;  3R5L A;  3FGE A;  3H96 A;  2NR4 A;  2D38 A;  2ECR A;  2IAB A;  3U35 A;  1JNW A;  1W3O A;  4F07 A;  1YOA A;  2OL5 A;  2E83 A;  3K87 A;  3RH7 A;  3CB0 A;  3SWJ A;  3ZOD A;  3BNK A;  1XHN A;  2IG6 A;  4XJ2 A;  2I02 A;  1RFE A;  1WLK A;  4Z85 A;  2ECU A;  3A6R A;  4HMS A;  1G79 A;  3KYF A;  4QVB A;  3IN6 A;  3ZOE A;  2HHZ A;  3VY2 A;  3R5P A;  2D37 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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