3E4WA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal form.
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
303
structure length
303
Chain Sequence
b'GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein
publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
source organism Mycobacterium avium subsp. paratuberculosis
molecule tags Oxidoreductase
total genus 91
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4wA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4wA02
3E4YA 1TH4A 4BLCA 3RGSA 3NWLA 1DGHA 3RE8A 1DGFA 1DGHB 3J7BA 1DGBA 3E4WA 3RGPA 1DGGA 1QQWA 1TH2A 4B7GA 1TH3A 4B7FA 8CATA 5GKNA 4B7HA 7CATA 1TGUA
chains in the Genus database with same CATH superfamily
2MMBA 3K2OA 4AI6A 1QWLA 1DGHA 3C95A 1DGFA 1DGBA 2YB5A 1SI8A 3HB6A 1TH3A 4FK0A 1P81A 3WSOA 4DTPA 3SUOA 4I9LA 4JRQA 3PQ2A 4DTSA 4J2DA 3EJ6A 1N1CA 4QOQA 1GGEA 4AUNA 4M3RA 4DU4A 3SNNA 3CQ8A 3L8BA 1FZ8E 3SCXA 1F4JA 3ZJ4A 2RCUA 3SJJA 4BIMA 3RMBA 3QESA 1QWMA 4X5MA 3LZIA 1H7KA 4QNDA 3RMCA 1XVFE 1QF7A 4DTOA 1GGKA 1NEXB 3PQ6A 3OGMB 4FJLA 1XMFE 4M3ZA 2DTUA 4ENRA 3L1NA 3PQ3A 5IBKB 2LF3A 4FJJA 3SVIA 1WAFA 3SUNA 4QOPA 3SQ2A 4AULA 3RMAA 3SPZA 3QNOA 2DEBA 4M45A 1U5UA 3N1EA 1XU3E 4ENQA 4ENVA 4FK2A 4B7FA 2HD0A 4J2BA 2CAGA 2PFTA 1Q9XA 2FW3A 1IH7A 4AUMA 1FZ0E 3DY5A 4FJIA 3NWLA 4I6JB 4B7AA 4X5NA 3C6OB 1LDKE 1M7SA 3NDKA 2OZSA 4KHQA 4M3WA 3SUPA 2VIXA 2CAHA 1GGHA 1FZ5E 4HCCA 2OYQA 4RG8A 4BFLA 4IT5A 3CFOA 2E31A 3QEVA 4E4BA 1GGJA 3J27A 1FZ7E 3NAEA 4FJ9A 2E32A 3LDSA 4QORA 2DY4A 1MHZG 1SY7A 3SQ1A 4M3YA 3SQ0A 1QWSA 2P5OA 2JH8A 4JRPA 4FJXA 2JQTA 4CABA 1GG9A 1P7YA 7CATA 3C94A 4BLCA 2H4TA 3C6NB 3VU3A 4ENSA 1HBZA 4FVMA 4KI6A 3P9SA 3L2OB 1QQWA 3QEPA 4ICGC 3RMDA 4EPHA 4HCBA 4J2AA 4KHYA 4FJ7A 1XL3C 1GWEA 2OZMA 4FJHA 3J7BA 1FZ1E 5H37A 4M3XA 3TTXA 1MQFA 4FK4A 2B8IA 4GAMC 2B7MA 4M42A 4FJGA 4FJ5A 1H6NA 2OVQB 3PQ5A 4EP9A 2P1QB 3HP9A 4JS5A 4QOLA 4DTUA 3N1BA 1XMHE 2LF6A 4J2EA 3PQ4A 2B1EA 3OGLB 4RL5A 4B40A 2VJ4A 3HGLA 4KHUA 2A9EA 5IZ7A 4DU3A 2P5GA 4FJKA 3S9HA 1DGHB 2P1OB 4E37A 1Q9YA 3LZJA 1TH2A 4I9QA 3KD1E 4B31A 4DU1A 4ADNA 2JPNA 1FZ2E 4E3SA 3NE6A 1XMGE 1MMOG 3QEWA 3RGSA 4ADOA 3TTVA 4DTXA 3TABA 3QEIA 4ENTA 1A4EA 1FZHE 2XQ1A 3J2PA 4KHNA 1XVGE 1FS1A 4M3UA 3UIQA 5IREA 4AKIA 1FZ9E 3P9RA 3TAEA 3QERA 4QOMA 4AUEA 3QETA 4AKHA 4QOOA 4DTMA 4B08A 4QNCA 1MHYG 3BVOA 3HL8A 2ISAA 3NCIA 1FZ6E 3RGPA 3SPYA 2OVRB 3UO3A 4M3TA 3TTUA 3ZJ5A 2FYOA 4FJ8A 4KHWA 5GKNA 4B2YA 3QNNA 4B7HA 1TGUA 3E4YA 1XVEE 1TH4A 1CLQA 3LD8A 1XVBE 2IQFA 4M41A 2XF2A 3OGKB 3QEXA 4FJNA 2OVPB 1GWHA 3TL8B 3NHGA 5BV2P 3L0MA 4EYWA 3P9PA 2PFVA 3TAGA 1NM0A 1FXXA 2ATQA 1FZ3E 4AJ9A 4DTRA 3KD5E 1P22A 3SQ4A 1XVDE 4FJMA 1JW2A 4B5KA 1DGGA 2MZWB 1MTYG 1FZIE 1FZ4E 3UO2A 1IG9A 8CATA 4KHSA 2JHPA 2IUFA 1P80A 3CFRA 2MW2A 1CF9A 1FPOA 3SUQA 2J2MA 4DTJA 4QONA 4ENWA 1FYZE 3C6PB 1P7ZA 3TTWA 2P1PB 3TJYA 4DTNA 2VJ5A 3E4WA 3MKSB 3RWUA 2P1MB 2JHAA 4RNGA 4KI4A 3TTTA 3P9QA 1E93A 1GGFA 1GWFA 3SI6A 2P1NB 1XU5E 4AKGA 3RE8A 2K5SA 3PQ7A 1WAJA 4ENPA 3HGKE 1XVCE 3NGIA 3TAFA 3CFPA 3V7DB 1M85A 2JHCA 4JS4A 1IPHA 3PQ8A 4B7GA 2QXFA 2RKHA 4ENUA 3LDBA 2JH9A
chains in the Genus database with same CATH topology
3E4YA 2MMBA 3K2OA 2OVQB 1XVEE 1TH4A 4EP9A 2P1QB 1CLQA 3HP9A 4FJIA 4AI6A 3LD8A 3NWLA 1XVBE 4I6JB 4JS5A 1DGHA 3C95A 1DGFA 4X5NA 4M41A 3C6OB 1DGBA 1LDKE 2YB5A 3OGKB 3NDKA 3QEXA 2OZSA 4FJNA 2OVPB 4KHQA 3TL8B 4DTUA 3N1BA 1XMHE 3NHGA 4M3WA 2LF6A 3SUPA 2VIXA 3L0MA 4EYWA 1TH3A 4FK0A 1FZ5E 4HCCA 2PFVA 3WSOA 2OYQA 4RG8A 4DTPA 3TAGA 3SUOA 4J2EA 1FXXA 2B1EA 2E31A 3CFOA 3OGLB 2ATQA 1FZ3E 4I9LA 4RL5A 4E4BA 4JRQA 4DTRA 3QEVA 2VJ4A 3KD5E 3J27A 4DTSA 3HGLA 4J2DA 1FZ7E 1P22A 4KHUA 5IZ7A 4DU3A 3NAEA 2P5GA 4FJKA 4FJ9A 3S9HA 2E32A 4M3RA 3LDSA 4DU4A 1DGHB 3SNNA 2DY4A 3SQ4A 2P1OB 1MHZG 1XVDE 3CQ8A 4FJMA 3SQ1A 1Q9YA 3SQ0A 4M3YA 3LZJA 3L8BA 2P5OA 1DGGA 1TH2A 4I9QA 2MZWB 1MTYG 1FZ8E 2JH8A 1FZIE 1FZ4E 4JRPA 3KD1E 4FJXA 1IG9A 3SCXA 8CATA 4DU1A 4KHSA 2JHPA 4ADNA 2RCUA 2JPNA 3SJJA 3CFRA 3RMBA 1FZ2E 4E3SA 7CATA 3C94A 3QESA 4X5MA 3NE6A 3LZIA 1XMGE 3SUQA 4BLCA 4DTJA 2H4TA 1MMOG 3QEWA 3RGSA 1FYZE 4ADOA 3C6PB 4QNDA 3C6NB 3RMCA 1XVFE 2P1PB 3TJYA 4DTNA 4DTXA 3TABA 1TGUA 3QEIA 2VJ5A 4DTOA 3E4WA 4FVMA 1NEXB 3MKSB 3RWUA 4KI6A 1FZHE 2P1MB 3J2PA 4KHNA 3L2OB 1QQWA 3OGMB 4FJLA 2JHAA 4RNGA 1XVGE 4KI4A 3QEPA 1FS1A 1XMFE 4M3UA 4M3ZA 3UIQA 5IREA 3RMDA 2DTUA 4EPHA 3L1NA 4HCBA 1FZ9E 4J2AA 4AKIA 3TAEA 3QERA 5IBKB 2LF3A 4FJJA 4KHYA 3QETA 3SVIA 3SI6A 2P1NB 4AKHA 1WAFA 4FJ7A 1XU5E 4AKGA 1XL3C 3SUNA 3SQ2A 3RMAA 4DTMA 4B08A 3SPZA 2OZMA 3QNOA 4QNCA 4FJHA 1MHYG 3RE8A 3HL8A 3J7BA 3NCIA 1FZ6E 1FZ1E 1WAJA 2DEBA 3HGKE 2OVRB 5H37A 3SPYA 4M3XA 1XVCE 3NGIA 3RGPA 3TAFA 4FK4A 4M45A 2B8IA 3N1EA 3V7DB 1XU3E 3CFPA 4GAMC 2JHCA 4JS4A 4M3TA 4FK2A 4B7GA 2QXFA 2FYOA 4FJ8A 4KHWA 2B7MA 4M42A 4B7FA 2HD0A 4FJGA 4J2BA 5GKNA 4FJ5A 2PFTA 1Q9XA 2FW3A 3QNNA 1IH7A 3LDBA 4B7HA 2JH9A 1FZ0E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E4Y A;  1TH4 A;  4BLC A;  3RGS A;  3NWL A;  1DGH A;  3RE8 A;  1DGF A;  1DGH B;  3J7B A;  1DGB A;  3E4W A;  3RGP A;  1DGG A;  1QQW A;  1TH2 A;  4B7G A;  1TH3 A;  4B7F A;  8CAT A;  5GKN A;  4B7H A;  7CAT A;  1TGU A; 
#chains in the Genus database with same CATH topology
 2MMB A;  3K2O A;  4AI6 A;  1QWL A;  1DGH A;  3C95 A;  1DGF A;  1DGB A;  2YB5 A;  1SI8 A;  3HB6 A;  1TH3 A;  4FK0 A;  1P81 A;  3WSO A;  4DTP A;  3SUO A;  4I9L A;  4JRQ A;  3PQ2 A;  4DTS A;  4J2D A;  3EJ6 A;  1N1C A;  4QOQ A;  1GGE A;  4AUN A;  4M3R A;  4DU4 A;  3SNN A;  3CQ8 A;  3L8B A;  1FZ8 E;  3SCX A;  1F4J A;  3ZJ4 A;  2RCU A;  3SJJ A;  4BIM A;  3RMB A;  3QES A;  1QWM A;  4X5M A;  3LZI A;  1H7K A;  4QND A;  3RMC A;  1XVF E;  1QF7 A;  4DTO A;  1GGK A;  1NEX B;  3PQ6 A;  3OGM B;  4FJL A;  1XMF E;  4M3Z A;  2DTU A;  4ENR A;  3L1N A;  3PQ3 A;  5IBK B;  2LF3 A;  4FJJ A;  3SVI A;  1WAF A;  3SUN A;  4QOP A;  3SQ2 A;  4AUL A;  3RMA A;  3SPZ A;  3QNO A;  2DEB A;  4M45 A;  1U5U A;  3N1E A;  1XU3 E;  4ENQ A;  4ENV A;  4FK2 A;  4B7F A;  2HD0 A;  4J2B A;  2CAG A;  2PFT A;  1Q9X A;  2FW3 A;  1IH7 A;  4AUM A;  1FZ0 E;  3DY5 A;  4FJI A;  3NWL A;  4I6J B;  4B7A A;  4X5N A;  3C6O B;  1LDK E;  1M7S A;  3NDK A;  2OZS A;  4KHQ A;  4M3W A;  3SUP A;  2VIX A;  2CAH A;  1GGH A;  1FZ5 E;  4HCC A;  2OYQ A;  4RG8 A;  4BFL A;  4IT5 A;  3CFO A;  2E31 A;  3QEV A;  4E4B A;  1GGJ A;  3J27 A;  1FZ7 E;  3NAE A;  4FJ9 A;  2E32 A;  3LDS A;  4QOR A;  2DY4 A;  1MHZ G;  1SY7 A;  3SQ1 A;  4M3Y A;  3SQ0 A;  1QWS A;  2P5O A;  2JH8 A;  4JRP A;  4FJX A;  2JQT A;  4CAB A;  1GG9 A;  1P7Y A;  7CAT A;  3C94 A;  4BLC A;  2H4T A;  3C6N B;  3VU3 A;  4ENS A;  1HBZ A;  4FVM A;  4KI6 A;  3P9S A;  3L2O B;  1QQW A;  3QEP A;  4ICG C;  3RMD A;  4EPH A;  4HCB A;  4J2A A;  4KHY A;  4FJ7 A;  1XL3 C;  1GWE A;  2OZM A;  4FJH A;  3J7B A;  1FZ1 E;  5H37 A;  4M3X A;  3TTX A;  1MQF A;  4FK4 A;  2B8I A;  4GAM C;  2B7M A;  4M42 A;  4FJG A;  4FJ5 A;  1H6N A;  2OVQ B;  3PQ5 A;  4EP9 A;  2P1Q B;  3HP9 A;  4JS5 A;  4QOL A;  4DTU A;  3N1B A;  1XMH E;  2LF6 A;  4J2E A;  3PQ4 A;  2B1E A;  3OGL B;  4RL5 A;  4B40 A;  2VJ4 A;  3HGL A;  4KHU A;  2A9E A;  5IZ7 A;  4DU3 A;  2P5G A;  4FJK A;  3S9H A;  1DGH B;  2P1O B;  4E37 A;  1Q9Y A;  3LZJ A;  1TH2 A;  4I9Q A;  3KD1 E;  4B31 A;  4DU1 A;  4ADN A;  2JPN A;  1FZ2 E;  4E3S A;  3NE6 A;  1XMG E;  1MMO G;  3QEW A;  3RGS A;  4ADO A;  3TTV A;  4DTX A;  3TAB A;  3QEI A;  4ENT A;  1A4E A;  1FZH E;  2XQ1 A;  3J2P A;  4KHN A;  1XVG E;  1FS1 A;  4M3U A;  3UIQ A;  5IRE A;  4AKI A;  1FZ9 E;  3P9R A;  3TAE A;  3QER A;  4QOM A;  4AUE A;  3QET A;  4AKH A;  4QOO A;  4DTM A;  4B08 A;  4QNC A;  1MHY G;  3BVO A;  3HL8 A;  2ISA A;  3NCI A;  1FZ6 E;  3RGP A;  3SPY A;  2OVR B;  3UO3 A;  4M3T A;  3TTU A;  3ZJ5 A;  2FYO A;  4FJ8 A;  4KHW A;  5GKN A;  4B2Y A;  3QNN A;  4B7H A;  1TGU A;  3E4Y A;  1XVE E;  1TH4 A;  1CLQ A;  3LD8 A;  1XVB E;  2IQF A;  4M41 A;  2XF2 A;  3OGK B;  3QEX A;  4FJN A;  2OVP B;  1GWH A;  3TL8 B;  3NHG A;  5BV2 P;  3L0M A;  4EYW A;  3P9P A;  2PFV A;  3TAG A;  1NM0 A;  1FXX A;  2ATQ A;  1FZ3 E;  4AJ9 A;  4DTR A;  3KD5 E;  1P22 A;  3SQ4 A;  1XVD E;  4FJM A;  1JW2 A;  4B5K A;  1DGG A;  2MZW B;  1MTY G;  1FZI E;  1FZ4 E;  3UO2 A;  1IG9 A;  8CAT A;  4KHS A;  2JHP A;  2IUF A;  1P80 A;  3CFR A;  2MW2 A;  1CF9 A;  1FPO A;  3SUQ A;  2J2M A;  4DTJ A;  4QON A;  4ENW A;  1FYZ E;  3C6P B;  1P7Z A;  3TTW A;  2P1P B;  3TJY A;  4DTN A;  2VJ5 A;  3E4W A;  3MKS B;  3RWU A;  2P1M B;  2JHA A;  4RNG A;  4KI4 A;  3TTT A;  3P9Q A;  1E93 A;  1GGF A;  1GWF A;  3SI6 A;  2P1N B;  1XU5 E;  4AKG A;  3RE8 A;  2K5S A;  3PQ7 A;  1WAJ A;  4ENP A;  3HGK E;  1XVC E;  3NGI A;  3TAF A;  3CFP A;  3V7D B;  1M85 A;  2JHC A;  4JS4 A;  1IPH A;  3PQ8 A;  4B7G A;  2QXF A;  2RKH A;  4ENU A;  3LDB A;  2JH9 A; 
#chains in the Genus database with same CATH homology
 3E4Y A;  2MMB A;  3K2O A;  2OVQ B;  1XVE E;  1TH4 A;  4EP9 A;  2P1Q B;  1CLQ A;  3HP9 A;  4FJI A;  4AI6 A;  3LD8 A;  3NWL A;  1XVB E;  4I6J B;  4JS5 A;  1DGH A;  3C95 A;  1DGF A;  4X5N A;  4M41 A;  3C6O B;  1DGB A;  1LDK E;  2YB5 A;  3OGK B;  3NDK A;  3QEX A;  2OZS A;  4FJN A;  2OVP B;  4KHQ A;  3TL8 B;  4DTU A;  3N1B A;  1XMH E;  3NHG A;  4M3W A;  2LF6 A;  3SUP A;  2VIX A;  3L0M A;  4EYW A;  1TH3 A;  4FK0 A;  1FZ5 E;  4HCC A;  2PFV A;  3WSO A;  2OYQ A;  4RG8 A;  4DTP A;  3TAG A;  3SUO A;  4J2E A;  1FXX A;  2B1E A;  2E31 A;  3CFO A;  3OGL B;  2ATQ A;  1FZ3 E;  4I9L A;  4RL5 A;  4E4B A;  4JRQ A;  4DTR A;  3QEV A;  2VJ4 A;  3KD5 E;  3J27 A;  4DTS A;  3HGL A;  4J2D A;  1FZ7 E;  1P22 A;  4KHU A;  5IZ7 A;  4DU3 A;  3NAE A;  2P5G A;  4FJK A;  4FJ9 A;  3S9H A;  2E32 A;  4M3R A;  3LDS A;  4DU4 A;  1DGH B;  3SNN A;  2DY4 A;  3SQ4 A;  2P1O B;  1MHZ G;  1XVD E;  3CQ8 A;  4FJM A;  3SQ1 A;  1Q9Y A;  3SQ0 A;  4M3Y A;  3LZJ A;  3L8B A;  2P5O A;  1DGG A;  1TH2 A;  4I9Q A;  2MZW B;  1MTY G;  1FZ8 E;  2JH8 A;  1FZI E;  1FZ4 E;  4JRP A;  3KD1 E;  4FJX A;  1IG9 A;  3SCX A;  8CAT A;  4DU1 A;  4KHS A;  2JHP A;  4ADN A;  2RCU A;  2JPN A;  3SJJ A;  3CFR A;  3RMB A;  1FZ2 E;  4E3S A;  7CAT A;  3C94 A;  3QES A;  4X5M A;  3NE6 A;  3LZI A;  1XMG E;  3SUQ A;  4BLC A;  4DTJ A;  2H4T A;  1MMO G;  3QEW A;  3RGS A;  1FYZ E;  4ADO A;  3C6P B;  4QND A;  3C6N B;  3RMC A;  1XVF E;  2P1P B;  3TJY A;  4DTN A;  4DTX A;  3TAB A;  1TGU A;  3QEI A;  2VJ5 A;  4DTO A;  3E4W A;  4FVM A;  1NEX B;  3MKS B;  3RWU A;  4KI6 A;  1FZH E;  2P1M B;  3J2P A;  4KHN A;  3L2O B;  1QQW A;  3OGM B;  4FJL A;  2JHA A;  4RNG A;  1XVG E;  4KI4 A;  3QEP A;  1FS1 A;  1XMF E;  4M3U A;  4M3Z A;  3UIQ A;  5IRE A;  3RMD A;  2DTU A;  4EPH A;  3L1N A;  4HCB A;  1FZ9 E;  4J2A A;  4AKI A;  3TAE A;  3QER A;  5IBK B;  2LF3 A;  4FJJ A;  4KHY A;  3QET A;  3SVI A;  3SI6 A;  2P1N B;  4AKH A;  1WAF A;  4FJ7 A;  1XU5 E;  4AKG A;  1XL3 C;  3SUN A;  3SQ2 A;  3RMA A;  4DTM A;  4B08 A;  3SPZ A;  2OZM A;  3QNO A;  4QNC A;  4FJH A;  1MHY G;  3RE8 A;  3HL8 A;  3J7B A;  3NCI A;  1FZ6 E;  1FZ1 E;  1WAJ A;  2DEB A;  3HGK E;  2OVR B;  5H37 A;  3SPY A;  4M3X A;  1XVC E;  3NGI A;  3RGP A;  3TAF A;  4FK4 A;  4M45 A;  2B8I A;  3N1E A;  3V7D B;  1XU3 E;  3CFP A;  4GAM C;  2JHC A;  4JS4 A;  4M3T A;  4FK2 A;  4B7G A;  2QXF A;  2FYO A;  4FJ8 A;  4KHW A;  2B7M A;  4M42 A;  4B7F A;  2HD0 A;  4FJG A;  4J2B A;  5GKN A;  4FJ5 A;  2PFT A;  1Q9X A;  2FW3 A;  3QNN A;  1IH7 A;  3LDB A;  4B7H A;  2JH9 A;  1FZ0 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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