3E4WA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal form.
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
303
structure length
303
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
source organism Mycobacterium avium subsp. paratuberculosis
molecule tags Oxidoreductase
molecule keywords Putative uncharacterized protein
total genus 91
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4wA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4wA02
4B7GA 1DGFA 1TGUA 3NWLA 1TH3A 3J7BA 4B7FA 5GKNA 3RGSA 4BLCA 1TH2A 4B7HA 1DGHB 1TH4A 1DGBA 3RGPA 3E4YA 8CATA 1DGGA 1DGHA 7CATA 3RE8A 3E4WA 1QQWA
chains in the Genus database with same CATH superfamily
3MKSB 5IREA 2MZWB 4ENPA 4BFLA 1XU3E 3TAFA 3RMDA 3SQ2A 1FZ3E 4BLCA 2VJ4A 3LDBA 4BIMA 1XU5E 4QOMA 3CFPA 3L2OB 3C94A 4QONA 3TTWA 2P1OB 3TTXA 1GWFA 3P9RA 3N1EA 3J7BA 4X5NA 3SUPA 2OZSA 1H6NA 3DY5A 4B7HA 5H37A 2B7MA 1U5UA 7CATA 2K5SA 3N1BA 4FVMA 3NAEA 3SJJA 2OZMA 3SUQA 4ENVA 4B7AA 3SUNA 3L8BA 4E37A 5BV2P 4AI6A 3P9SA 1GGFA 3QEIA 2CAGA 1XVGE 8CATA 4EP9A 4AJ9A 4IT5A 1GGJA 2JPNA 4B5KA 3TAGA 3NWLA 3EJ6A 1MHZG 3TJYA 3PQ4A 4KI4A 3PQ5A 1MHYG 5IZ7A 1FZ1E 4ADOA 2H4TA 1MTYG 3QERA 1FZHE 1XVFE 3OGMB 2P5OA 3PQ6A 3HGKE 3QETA 3NCIA 4M3XA 2OVRB 4KHQA 3SQ0A 4B31A 4AUEA 3OGKB 4DU3A 3NGIA 2DEBA 3C95A 4M3WA 3RMAA 3QNNA 2MW2A 3BVOA 4HCCA 3SPYA 2E32A 4DTUA 1HBZA 3E4YA 3CFOA 4FJXA 4AKHA 4ENTA 2FYOA 2P1PB 1DGFA 1LDKE 2MMBA 1GWHA 4B40A 4EYWA 3C6NB 3UO2A 4E4BA 2LF3A 3L1NA 1CLQA 3OGLB 2JQTA 2DTUA 3SNNA 2JHCA 2VIXA 3LDSA 3SQ1A 3QNOA 1DGHA 1E93A 2ISAA 4KHWA 4B7GA 4QOQA 1XVBE 3PQ3A 1CF9A 4J2AA 3HL8A 3NHGA 1M85A 4FJKA 1GWEA 1QWSA 1XMFE 4DTXA 4FJIA 3LZIA 4QNCA 4M41A 1WAFA 1A4EA 1GGHA 1TH3A 1GG9A 2JHPA 1FZ6E 4FJ9A 4J2BA 1FXXA 5GKNA 3RGSA 3NDKA 1P80A 3WSOA 2J2MA 3LD8A 4FJGA 3RGPA 1IH7A 3CQ8A 2JH8A 2A9EA 4KHYA 4AUNA 4M42A 3HB6A 2OVPB 1SY7A 1XMHE 3SPZA 3SQ4A 1MQFA 4J2DA 2P1NB 1NEXB 2B8IA 1M7SA 4FJJA 1TH2A 2P5GA 4DTRA 3QEPA 3TTVA 4M3YA 3ZJ5A 3J2PA 2XQ1A 1QQWA 4I9LA 1FZ4E 1MMOG 3K2OA 4ENUA 3TTTA 4DTNA 2IUFA 1FZ7E 3J27A 2HD0A 4KHUA 3P9QA 4QOPA 3RMCA 2LF6A 4DTSA 3QEXA 4ICGC 3E4WA 4I9QA 1IG9A 1FZ9E 4FJHA 1P22A 3RWUA 4RNGA 4M3TA 1FPOA 4JS4A 1TH4A 1XVEE 1WAJA 3KD1E 3RE8A 2RCUA 1Q9XA 2YB5A 3C6PB 4J2EA 4B7FA 4DTJA 4EPHA 4KI6A 4ENRA 3TABA 2P1QB 4AKIA 4I6JB 1FS1A 1FZ5E 2QXFA 2CAHA 2VJ5A 2B1EA 3QESA 1DGBA 1P7YA 4X5MA 2P1MB 1QF7A 4HCBA 1XMGE 3PQ2A 1GGKA 1FZIE 4JRQA 3UO3A 1NM0A 2IQFA 3RMBA 1QWLA 3VU3A 4M3UA 4DU1A 4M3ZA 1JW2A 1FZ0E 3SCXA 3KD5E 4RG8A 4ENWA 4KHSA 1FZ8E 2FW3A 3PQ7A 4FK0A 1XVDE 4QNDA 3QEVA 2OVQB 3TAEA 4DTOA 4QOLA 3PQ8A 4FJLA 1TGUA 3S9HA 4DTPA 3SUOA 4FJ5A 4RL5A 4GAMC 1N1CA 4E3SA 4QORA 3TTUA 3L0MA 1F4JA 4FJ8A 4FK4A 4CABA 1DGGA 2ATQA 3P9PA 2OYQA 3HGLA 3CFRA 4M45A 3UIQA 1P7ZA 1GGEA 4B08A 4ENQA 4QOOA 4DTMA 4AULA 1FZ2E 3QEWA 4AUMA 3NE6A 2RKHA 1XVCE 1P81A 4JRPA 2XF2A 2PFTA 3SVIA 1DGHB 3HP9A 3TL8B 4FK2A 4FJ7A 2E31A 3V7DB 4AKGA 3C6OB 3SI6A 4DU4A 2JHAA 3ZJ4A 1Q9YA 4FJMA 4KHNA 1XL3C 4ADNA 4JS5A 4M3RA 4B2YA 1IPHA 1H7KA 2DY4A 3LZJA 4ENSA 2JH9A 1SI8A 4FJNA 1FYZE 1QWMA 2PFVA 5IBKB
chains in the Genus database with same CATH topology
3MKSB 2OVPB 1XMHE 3C95A 5IREA 4JRQA 4M3WA 3RMAA 2MZWB 3QNNA 3RMBA 3SPZA 1XU3E 3SQ4A 3TAFA 4M3UA 3RMDA 4DU1A 4J2DA 4HCCA 4M3ZA 2P1NB 1FZ0E 3SQ2A 3SCXA 1FZ3E 4RG8A 3KD5E 4BLCA 2VJ4A 1FZ8E 2FW3A 3LDBA 3SPYA 1XVDE 4FK0A 1NEXB 4KHSA 1XU5E 2B8IA 2E32A 4QNDA 3CFPA 4FJJA 3QEVA 1TH2A 2OVQB 3TAEA 2P5GA 3L2OB 4DTUA 3C94A 3E4YA 4DTRA 4DTOA 3QEPA 4M3YA 3J2PA 3CFOA 4FJXA 4AKHA 1QQWA 4I9LA 2FYOA 2P1OB 2P1PB 1FZ4E 1DGFA 1LDKE 1MMOG 2MMBA 4FJLA 3S9HA 1TGUA 3K2OA 4EYWA 4DTPA 3N1EA 3J7BA 3SUOA 3C6NB 4DTNA 4FJ5A 4RL5A 4GAMC 4E4BA 4E3SA 4X5NA 3SUPA 1FZ7E 2OZSA 2LF3A 3L1NA 3J27A 3L0MA 2HD0A 1CLQA 4KHUA 3OGLB 4FJ8A 2DTUA 3SNNA 4B7HA 5H37A 4FK4A 2B7MA 2JHCA 2VIXA 3LDSA 1DGGA 2ATQA 3RMCA 3QNOA 3SQ1A 1DGHA 2LF6A 7CATA 3N1BA 4FVMA 4DTSA 3QEXA 3NAEA 2OYQA 3E4WA 2DEBA 4I9QA 3SJJA 1IG9A 3HGLA 1FZ9E 2OZMA 3CFRA 4FJHA 4KHWA 4M45A 4B7GA 1P22A 3UIQA 3SUQA 1XVBE 3RWUA 4B08A 3SUNA 3L8BA 4DTMA 4RNGA 1FZ2E 4J2AA 3HL8A 3NHGA 4M3TA 4AI6A 3QEWA 4FJKA 3QEIA 3NE6A 1XVCE 4JRPA 1XVGE 1XMFE 2PFTA 3SVIA 4JS4A 4DTXA 1DGHB 3HP9A 1TH4A 4FJIA 1XVEE 3TL8B 4FK2A 8CATA 1WAJA 3KD1E 4EP9A 3LZIA 4FJ7A 3RE8A 2JPNA 4QNCA 4M41A 2E31A 1WAFA 3TAGA 3V7DB 4AKGA 3NWLA 3C6OB 3SI6A 1TH3A 2RCUA 1MHZG 3TJYA 2JHPA 4DU4A 4KI4A 1Q9XA 2YB5A 3C6PB 4J2EA 1FZ6E 2JHAA 4DTJA 1MHYG 4EPHA 5IZ7A 1FZ1E 4FJ9A 1Q9YA 4J2BA 4FJMA 1FXXA 4KI6A 4ADOA 5GKNA 2H4TA 4KHNA 3RGSA 1MTYG 1XL3C 4ADNA 3NDKA 4JS5A 2P1QB 4M3RA 3TABA 4I6JB 4AKIA 1FS1A 1FZHE 1FZ5E 3WSOA 3LZJA 1XVFE 2QXFA 3OGMB 2JH9A 3QERA 3LD8A 2P5OA 2DY4A 2VJ5A 4FJGA 3HGKE 3QETA 2B1EA 3NCIA 3QESA 4FJNA 4M3XA 1DGBA 3RGPA 1IH7A 2OVRB 3CQ8A 4X5MA 2JH8A 3SQ0A 4KHQA 1FYZE 2P1MB 4HCBA 4KHYA 1XMGE 3OGKB 4DU3A 4M42A 3NGIA 2PFVA 1FZIE 4B7FA 5IBKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B7G A;  1DGF A;  1TGU A;  3NWL A;  1TH3 A;  3J7B A;  4B7F A;  5GKN A;  3RGS A;  4BLC A;  1TH2 A;  4B7H A;  1DGH B;  1TH4 A;  1DGB A;  3RGP A;  3E4Y A;  8CAT A;  1DGG A;  1DGH A;  7CAT A;  3RE8 A;  3E4W A;  1QQW A; 
#chains in the Genus database with same CATH topology
 3MKS B;  5IRE A;  2MZW B;  4ENP A;  4BFL A;  1XU3 E;  3TAF A;  3RMD A;  3SQ2 A;  1FZ3 E;  4BLC A;  2VJ4 A;  3LDB A;  4BIM A;  1XU5 E;  4QOM A;  3CFP A;  3L2O B;  3C94 A;  4QON A;  3TTW A;  2P1O B;  3TTX A;  1GWF A;  3P9R A;  3N1E A;  3J7B A;  4X5N A;  3SUP A;  2OZS A;  1H6N A;  3DY5 A;  4B7H A;  5H37 A;  2B7M A;  1U5U A;  7CAT A;  2K5S A;  3N1B A;  4FVM A;  3NAE A;  3SJJ A;  2OZM A;  3SUQ A;  4ENV A;  4B7A A;  3SUN A;  3L8B A;  4E37 A;  5BV2 P;  4AI6 A;  3P9S A;  1GGF A;  3QEI A;  2CAG A;  1XVG E;  8CAT A;  4EP9 A;  4AJ9 A;  4IT5 A;  1GGJ A;  2JPN A;  4B5K A;  3TAG A;  3NWL A;  3EJ6 A;  1MHZ G;  3TJY A;  3PQ4 A;  4KI4 A;  3PQ5 A;  1MHY G;  5IZ7 A;  1FZ1 E;  4ADO A;  2H4T A;  1MTY G;  3QER A;  1FZH E;  1XVF E;  3OGM B;  2P5O A;  3PQ6 A;  3HGK E;  3QET A;  3NCI A;  4M3X A;  2OVR B;  4KHQ A;  3SQ0 A;  4B31 A;  4AUE A;  3OGK B;  4DU3 A;  3NGI A;  2DEB A;  3C95 A;  4M3W A;  3RMA A;  3QNN A;  2MW2 A;  3BVO A;  4HCC A;  3SPY A;  2E32 A;  4DTU A;  1HBZ A;  3E4Y A;  3CFO A;  4FJX A;  4AKH A;  4ENT A;  2FYO A;  2P1P B;  1DGF A;  1LDK E;  2MMB A;  1GWH A;  4B40 A;  4EYW A;  3C6N B;  3UO2 A;  4E4B A;  2LF3 A;  3L1N A;  1CLQ A;  3OGL B;  2JQT A;  2DTU A;  3SNN A;  2JHC A;  2VIX A;  3LDS A;  3SQ1 A;  3QNO A;  1DGH A;  1E93 A;  2ISA A;  4KHW A;  4B7G A;  4QOQ A;  1XVB E;  3PQ3 A;  1CF9 A;  4J2A A;  3HL8 A;  3NHG A;  1M85 A;  4FJK A;  1GWE A;  1QWS A;  1XMF E;  4DTX A;  4FJI A;  3LZI A;  4QNC A;  4M41 A;  1WAF A;  1A4E A;  1GGH A;  1TH3 A;  1GG9 A;  2JHP A;  1FZ6 E;  4FJ9 A;  4J2B A;  1FXX A;  5GKN A;  3RGS A;  3NDK A;  1P80 A;  3WSO A;  2J2M A;  3LD8 A;  4FJG A;  3RGP A;  1IH7 A;  3CQ8 A;  2JH8 A;  2A9E A;  4KHY A;  4AUN A;  4M42 A;  3HB6 A;  2OVP B;  1SY7 A;  1XMH E;  3SPZ A;  3SQ4 A;  1MQF A;  4J2D A;  2P1N B;  1NEX B;  2B8I A;  1M7S A;  4FJJ A;  1TH2 A;  2P5G A;  4DTR A;  3QEP A;  3TTV A;  4M3Y A;  3ZJ5 A;  3J2P A;  2XQ1 A;  1QQW A;  4I9L A;  1FZ4 E;  1MMO G;  3K2O A;  4ENU A;  3TTT A;  4DTN A;  2IUF A;  1FZ7 E;  3J27 A;  2HD0 A;  4KHU A;  3P9Q A;  4QOP A;  3RMC A;  2LF6 A;  4DTS A;  3QEX A;  4ICG C;  3E4W A;  4I9Q A;  1IG9 A;  1FZ9 E;  4FJH A;  1P22 A;  3RWU A;  4RNG A;  4M3T A;  1FPO A;  4JS4 A;  1TH4 A;  1XVE E;  1WAJ A;  3KD1 E;  3RE8 A;  2RCU A;  1Q9X A;  2YB5 A;  3C6P B;  4J2E A;  4B7F A;  4DTJ A;  4EPH A;  4KI6 A;  4ENR A;  3TAB A;  2P1Q B;  4AKI A;  4I6J B;  1FS1 A;  1FZ5 E;  2QXF A;  2CAH A;  2VJ5 A;  2B1E A;  3QES A;  1DGB A;  1P7Y A;  4X5M A;  2P1M B;  1QF7 A;  4HCB A;  1XMG E;  3PQ2 A;  1GGK A;  1FZI E;  4JRQ A;  3UO3 A;  1NM0 A;  2IQF A;  3RMB A;  1QWL A;  3VU3 A;  4M3U A;  4DU1 A;  4M3Z A;  1JW2 A;  1FZ0 E;  3SCX A;  3KD5 E;  4RG8 A;  4ENW A;  4KHS A;  1FZ8 E;  2FW3 A;  3PQ7 A;  4FK0 A;  1XVD E;  4QND A;  3QEV A;  2OVQ B;  3TAE A;  4DTO A;  4QOL A;  3PQ8 A;  4FJL A;  1TGU A;  3S9H A;  4DTP A;  3SUO A;  4FJ5 A;  4RL5 A;  4GAM C;  1N1C A;  4E3S A;  4QOR A;  3TTU A;  3L0M A;  1F4J A;  4FJ8 A;  4FK4 A;  4CAB A;  1DGG A;  2ATQ A;  3P9P A;  2OYQ A;  3HGL A;  3CFR A;  4M45 A;  3UIQ A;  1P7Z A;  1GGE A;  4B08 A;  4ENQ A;  4QOO A;  4DTM A;  4AUL A;  1FZ2 E;  3QEW A;  4AUM A;  3NE6 A;  2RKH A;  1XVC E;  1P81 A;  4JRP A;  2XF2 A;  2PFT A;  3SVI A;  1DGH B;  3HP9 A;  3TL8 B;  4FK2 A;  4FJ7 A;  2E31 A;  3V7D B;  4AKG A;  3C6O B;  3SI6 A;  4DU4 A;  2JHA A;  3ZJ4 A;  1Q9Y A;  4FJM A;  4KHN A;  1XL3 C;  4ADN A;  4JS5 A;  4M3R A;  4B2Y A;  1IPH A;  1H7K A;  2DY4 A;  3LZJ A;  4ENS A;  2JH9 A;  1SI8 A;  4FJN A;  1FYZ E;  1QWM A;  2PFV A;  5IBK B; 
#chains in the Genus database with same CATH homology
 3MKS B;  2OVP B;  1XMH E;  3C95 A;  5IRE A;  4JRQ A;  4M3W A;  3RMA A;  2MZW B;  3QNN A;  3RMB A;  3SPZ A;  1XU3 E;  3SQ4 A;  3TAF A;  4M3U A;  3RMD A;  4DU1 A;  4J2D A;  4HCC A;  4M3Z A;  2P1N B;  1FZ0 E;  3SQ2 A;  3SCX A;  1FZ3 E;  4RG8 A;  3KD5 E;  4BLC A;  2VJ4 A;  1FZ8 E;  2FW3 A;  3LDB A;  3SPY A;  1XVD E;  4FK0 A;  1NEX B;  4KHS A;  1XU5 E;  2B8I A;  2E32 A;  4QND A;  3CFP A;  4FJJ A;  3QEV A;  1TH2 A;  2OVQ B;  3TAE A;  2P5G A;  3L2O B;  4DTU A;  3C94 A;  3E4Y A;  4DTR A;  4DTO A;  3QEP A;  4M3Y A;  3J2P A;  3CFO A;  4FJX A;  4AKH A;  1QQW A;  4I9L A;  2FYO A;  2P1O B;  2P1P B;  1FZ4 E;  1DGF A;  1LDK E;  1MMO G;  2MMB A;  4FJL A;  3S9H A;  1TGU A;  3K2O A;  4EYW A;  4DTP A;  3N1E A;  3J7B A;  3SUO A;  3C6N B;  4DTN A;  4FJ5 A;  4RL5 A;  4GAM C;  4E4B A;  4E3S A;  4X5N A;  3SUP A;  1FZ7 E;  2OZS A;  2LF3 A;  3L1N A;  3J27 A;  3L0M A;  2HD0 A;  1CLQ A;  4KHU A;  3OGL B;  4FJ8 A;  2DTU A;  3SNN A;  4B7H A;  5H37 A;  4FK4 A;  2B7M A;  2JHC A;  2VIX A;  3LDS A;  1DGG A;  2ATQ A;  3RMC A;  3QNO A;  3SQ1 A;  1DGH A;  2LF6 A;  7CAT A;  3N1B A;  4FVM A;  4DTS A;  3QEX A;  3NAE A;  2OYQ A;  3E4W A;  2DEB A;  4I9Q A;  3SJJ A;  1IG9 A;  3HGL A;  1FZ9 E;  2OZM A;  3CFR A;  4FJH A;  4KHW A;  4M45 A;  4B7G A;  1P22 A;  3UIQ A;  3SUQ A;  1XVB E;  3RWU A;  4B08 A;  3SUN A;  3L8B A;  4DTM A;  4RNG A;  1FZ2 E;  4J2A A;  3HL8 A;  3NHG A;  4M3T A;  4AI6 A;  3QEW A;  4FJK A;  3QEI A;  3NE6 A;  1XVC E;  4JRP A;  1XVG E;  1XMF E;  2PFT A;  3SVI A;  4JS4 A;  4DTX A;  1DGH B;  3HP9 A;  1TH4 A;  4FJI A;  1XVE E;  3TL8 B;  4FK2 A;  8CAT A;  1WAJ A;  3KD1 E;  4EP9 A;  3LZI A;  4FJ7 A;  3RE8 A;  2JPN A;  4QNC A;  4M41 A;  2E31 A;  1WAF A;  3TAG A;  3V7D B;  4AKG A;  3NWL A;  3C6O B;  3SI6 A;  1TH3 A;  2RCU A;  1MHZ G;  3TJY A;  2JHP A;  4DU4 A;  4KI4 A;  1Q9X A;  2YB5 A;  3C6P B;  4J2E A;  1FZ6 E;  2JHA A;  4DTJ A;  1MHY G;  4EPH A;  5IZ7 A;  1FZ1 E;  4FJ9 A;  1Q9Y A;  4J2B A;  4FJM A;  1FXX A;  4KI6 A;  4ADO A;  5GKN A;  2H4T A;  4KHN A;  3RGS A;  1MTY G;  1XL3 C;  4ADN A;  3NDK A;  4JS5 A;  2P1Q B;  4M3R A;  3TAB A;  4I6J B;  4AKI A;  1FS1 A;  1FZH E;  1FZ5 E;  3WSO A;  3LZJ A;  1XVF E;  2QXF A;  3OGM B;  2JH9 A;  3QER A;  3LD8 A;  2P5O A;  2DY4 A;  2VJ5 A;  4FJG A;  3HGK E;  3QET A;  2B1E A;  3NCI A;  3QES A;  4FJN A;  4M3X A;  1DGB A;  3RGP A;  1IH7 A;  2OVR B;  3CQ8 A;  4X5M A;  2JH8 A;  3SQ0 A;  4KHQ A;  1FYZ E;  2P1M B;  4HCB A;  4KHY A;  1XMG E;  3OGK B;  4DU3 A;  4M42 A;  3NGI A;  2PFV A;  1FZI E;  4B7F A;  5IBK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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