3E4WA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal form.
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
303
structure length
303
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Mycobacterium avium subsp. paratuberculosis
molecule keywords Putative uncharacterized protein
total genus 91
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4wA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4wA02
1TH3A 1TH2A 4B7HA 3E4YA 1DGHA 1DGBA 4B7GA 7CATA 1QQWA 3J7BA 5GKNA 3NWLA 4BLCA 3E4WA 3RGSA 3RE8A 1TH4A 1DGHB 1DGGA 4B7FA 1DGFA 1TGUA 3RGPA 8CATA
chains in the Genus database with same CATH superfamily
1XL3C 1MHYG 1DGHA 1MTYG 1FZ7E 3UO3A 4FJGA 7CATA 2XQ1A 3CFRA 3SNNA 2OVQB 3PQ7A 1FZ8E 3ZJ4A 3TL8B 1TH4A 4B5KA 4FJ9A 1HBZA 1QWMA 4GAMC 3PQ8A 2P1QB 3CQ8A 1XU5E 4J2DA 2E32A 4ENWA 2IUFA 1SY7A 2VJ5A 2DTUA 1GGHA 2JH9A 3N1BA 1GGKA 4FJNA 5GKNA 4RL5A 4DU1A 4QOMA 4AKGA 1FZ3E 1FZ0E 1GGEA 4I9QA 1GG9A 1MHZG 3V7DB 1Q9XA 3PQ3A 4QNCA 2OVRB 1FS1A 1LDKE 3J2PA 3RGSA 3RE8A 4QORA 3HL8A 4QNDA 4J2BA 1NM0A 2JHPA 4M3XA 3BVOA 2P1OB 3NDKA 1N1CA 3PQ6A 1Q9YA 4M3YA 4QOOA 3TTVA 4KI4A 2DEBA 3TJYA 1P80A 5IREA 4FJIA 2PFVA 4FK0A 2CAHA 2JQTA 2OYQA 3QEXA 1DGHB 3RMAA 1SI8A 1FXXA 2JPNA 4AKIA 4HCBA 1TH3A 4X5NA 3NCIA 3SPYA 4EYWA 1M7SA 4FJ7A 3P9SA 3SQ2A 3P9PA 3PQ5A 3NHGA 4ADNA 1FZ6E 5IBKB 1FZ4E 3PQ2A 1TGUA 1U5UA 4DTSA 1TH2A 3RMDA 3EJ6A 3L2OB 4DU4A 1QWLA 3TAEA 4B08A 4DTPA 2B1EA 4ENVA 1QQWA 4FJJA 3RMCA 2OZSA 4HCCA 4ICGC 3KD1E 3SUQA 3QEIA 3N1EA 1WAJA 3QNNA 4JRPA 4AI6A 1GWHA 3QEPA 4M3UA 4KHSA 3SJJA 1XMGE 1A4EA 2OZMA 2YB5A 4ENPA 3CFPA 3K2OA 4E4BA 3SQ4A 4FJ8A 4I6JB 4KHUA 1XVBE 2LF3A 4B31A 3J27A 2P1NB 4M3WA 4ENRA 8CATA 1H6NA 3E4YA 2MMBA 1DGBA 1QF7A 3QEWA 2JHCA 3P9RA 4ENSA 1P7ZA 3OGKB 3SI6A 2P5GA 4FJ5A 4B2YA 2A9EA 4ENUA 4BFLA 2FYOA 4E3SA 3NE6A 3HGKE 3MKSB 3HP9A 3TAGA 1XVDE 1QWSA 3HGLA 3LD8A 4DTUA 2H4TA 4DTNA 3LZIA 4FJXA 3SQ0A 4M41A 1GWFA 4E37A 5H37A 2HD0A 4QOLA 3PQ4A 3QESA 4CABA 3LDBA 4ADOA 1IH7A 4B40A 4M3ZA 2ATQA 4FJKA 1P22A 1XVEE 1XVFE 2K5SA 1IG9A 3SVIA 1FZHE 1F4JA 2XF2A 3TTXA 4FJLA 4QONA 4DTOA 4BLCA 1FZ5E 4KHNA 3DY5A 3L8BA 3TTTA 4RG8A 2RKHA 1MMOG 1M85A 2CAGA 3TABA 1GGJA 2P1PB 3RMBA 4M3RA 4M42A 3SQ1A 4DU3A 1FZ2E 4QOPA 3C6NB 1NEXB 3LZJA 4JRQA 1FPOA 4J2EA 3TTWA 2B8IA 1GWEA 3VU3A 2FW3A 1P81A 2RCUA 3SCXA 2P5OA 3SUPA 4AKHA 3L0MA 4FJMA 3J7BA 4M3TA 1E93A 3C95A 2B7MA 4ENQA 1MQFA 2LF6A 3UIQA 4DTJA 1GGFA 4KI6A 3ZJ5A 4FK2A 2OVPB 1H7KA 1FZ9E 4B7HA 1WAFA 4KHQA 3L1NA 1XVGE 4DTXA 4BIMA 4J2AA 3NWLA 3S9HA 1CLQA 2JHAA 1IPHA 2MZWB 3KD5E 3P9QA 1XMFE 5IZ7A 4X5MA 4JS5A 3QETA 1P7YA 2E31A 2MW2A 1XU3E 2QXFA 3OGLB 4RNGA 2ISAA 4M45A 2VIXA 4KHWA 2PFTA 4KHYA 3E4WA 3C6PB 4AULA 1DGFA 4EPHA 4FVMA 4B7AA 1FZ1E 3LDSA 4DTRA 4JS4A 2VJ4A 2DY4A 1FYZE 3HB6A 3SPZA 3C94A 1CF9A 1JW2A 4AJ9A 4ENTA 2JH8A 3C6OB 3CFOA 4I9LA 1XVCE 3NAEA 3QERA 2P1MB 4DTMA 3SUNA 3OGMB 3WSOA 3SUOA 4AUMA 3RWUA 5BV2P 3TTUA 1XMHE 3QNOA 4IT5A 4FK4A 4B7GA 3NGIA 4AUEA 3TAFA 4QOQA 1DGGA 4B7FA 4EP9A 3UO2A 3QEVA 4AUNA 1FZIE 2J2MA 4FJHA 3RGPA 2IQFA
chains in the Genus database with same CATH topology
1FZ9E 3LD8A 4X5NA 1XL3C 3NCIA 2H4TA 1WAFA 4DTUA 4DTNA 1MHYG 1TH3A 1DGHA 4B7HA 1MTYG 3LZIA 3SPYA 1FZ7E 4EYWA 4FJXA 4FJ7A 4KHQA 4FJGA 3L1NA 7CATA 3SQ2A 4M41A 3CFRA 3SQ0A 3SNNA 1XVGE 4DTXA 5H37A 2OVQB 4J2AA 2HD0A 3NHGA 3NWLA 1FZ8E 4ADNA 3TL8B 1FZ6E 5IBKB 3QESA 3S9HA 1CLQA 1FZ4E 2JHAA 3LDBA 2MZWB 4ADOA 3KD5E 1TH4A 1TGUA 1XMFE 4FJ9A 5IZ7A 4X5MA 4GAMC 1IH7A 4JS5A 3QETA 4DTSA 4M3ZA 2ATQA 2P1QB 3RMDA 4FJKA 3CQ8A 3L2OB 4DU4A 1P22A 2E31A 1XVEE 1TH2A 1XVFE 1XU3E 1XU5E 4J2DA 3TAEA 1IG9A 2E32A 2QXFA 4B08A 4DTPA 3OGLB 2B1EA 4RNGA 3SVIA 1QQWA 1FZHE 2VIXA 2VJ5A 4M45A 3RMCA 4FJJA 2DTUA 4KHWA 2PFTA 2JH9A 3N1BA 4KHYA 4FJLA 4FJNA 2OZSA 4RL5A 5GKNA 4DTOA 4BLCA 3E4WA 4DU1A 4HCCA 3C6PB 4AKGA 3KD1E 3SUQA 1FZ3E 1FZ5E 3N1EA 1WAJA 3QEIA 4KHNA 3L8BA 4RG8A 3QNNA 1DGFA 4JRPA 4EPHA 1FZ0E 4I9QA 4AI6A 1MMOG 4FVMA 1FZ1E 3LDSA 4DTRA 1MHZG 4JS4A 3V7DB 2VJ4A 3QEPA 2DY4A 3TABA 1Q9XA 1FYZE 4M3UA 4QNCA 4KHSA 2P1PB 3RMBA 3SPZA 3C94A 4M3RA 1XMGE 3SJJA 4M42A 3SQ1A 2OZMA 2OVRB 2YB5A 4DU3A 1FZ2E 2JH8A 3C6NB 3C6OB 3CFOA 1FS1A 4I9LA 1NEXB 3LZJA 1XVCE 3NAEA 4JRQA 1LDKE 2P1MB 4DTMA 3QERA 3SUNA 3OGMB 4J2EA 3WSOA 3SUOA 3CFPA 4HCBA 3K2OA 3J2PA 4E4BA 3RWUA 3RGSA 3SQ4A 4FJ8A 4I6JB 3RE8A 3HL8A 2B8IA 4KHUA 4QNDA 1XVBE 4J2BA 2JHPA 2LF3A 4M3XA 2P1OB 3NDKA 2FW3A 3J27A 2RCUA 3SCXA 1Q9YA 2P1NB 1XMHE 2P5OA 4M3WA 4M3YA 8CATA 3SUPA 3QNOA 3E4YA 4KI4A 2MMBA 2DEBA 3RGPA 3TJYA 1DGBA 4FK4A 4B7GA 3QEWA 2JHCA 3NGIA 3L0MA 5IREA 4AKHA 4FJMA 4FJIA 2PFVA 3TAFA 3OGKB 3SI6A 3J7BA 2P5GA 4M3TA 4FK0A 3C95A 4FJ5A 2B7MA 2OYQA 3QEXA 2FYOA 4E3SA 1DGHB 2LF6A 1DGGA 4B7FA 4EP9A 3NE6A 3HGKE 3MKSB 3RMAA 3UIQA 4DTJA 3QEVA 3HP9A 4KI6A 3TAGA 1FZIE 1XVDE 1FXXA 4FJHA 4FK2A 2JPNA 2OVPB 4AKIA 3HGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TH3 A;  1TH2 A;  4B7H A;  3E4Y A;  1DGH A;  1DGB A;  4B7G A;  7CAT A;  1QQW A;  3J7B A;  5GKN A;  3NWL A;  4BLC A;  3E4W A;  3RGS A;  3RE8 A;  1TH4 A;  1DGH B;  1DGG A;  4B7F A;  1DGF A;  1TGU A;  3RGP A;  8CAT A; 
#chains in the Genus database with same CATH topology
 1XL3 C;  1MHY G;  1DGH A;  1MTY G;  1FZ7 E;  3UO3 A;  4FJG A;  7CAT A;  2XQ1 A;  3CFR A;  3SNN A;  2OVQ B;  3PQ7 A;  1FZ8 E;  3ZJ4 A;  3TL8 B;  1TH4 A;  4B5K A;  4FJ9 A;  1HBZ A;  1QWM A;  4GAM C;  3PQ8 A;  2P1Q B;  3CQ8 A;  1XU5 E;  4J2D A;  2E32 A;  4ENW A;  2IUF A;  1SY7 A;  2VJ5 A;  2DTU A;  1GGH A;  2JH9 A;  3N1B A;  1GGK A;  4FJN A;  5GKN A;  4RL5 A;  4DU1 A;  4QOM A;  4AKG A;  1FZ3 E;  1FZ0 E;  1GGE A;  4I9Q A;  1GG9 A;  1MHZ G;  3V7D B;  1Q9X A;  3PQ3 A;  4QNC A;  2OVR B;  1FS1 A;  1LDK E;  3J2P A;  3RGS A;  3RE8 A;  4QOR A;  3HL8 A;  4QND A;  4J2B A;  1NM0 A;  2JHP A;  4M3X A;  3BVO A;  2P1O B;  3NDK A;  1N1C A;  3PQ6 A;  1Q9Y A;  4M3Y A;  4QOO A;  3TTV A;  4KI4 A;  2DEB A;  3TJY A;  1P80 A;  5IRE A;  4FJI A;  2PFV A;  4FK0 A;  2CAH A;  2JQT A;  2OYQ A;  3QEX A;  1DGH B;  3RMA A;  1SI8 A;  1FXX A;  2JPN A;  4AKI A;  4HCB A;  1TH3 A;  4X5N A;  3NCI A;  3SPY A;  4EYW A;  1M7S A;  4FJ7 A;  3P9S A;  3SQ2 A;  3P9P A;  3PQ5 A;  3NHG A;  4ADN A;  1FZ6 E;  5IBK B;  1FZ4 E;  3PQ2 A;  1TGU A;  1U5U A;  4DTS A;  1TH2 A;  3RMD A;  3EJ6 A;  3L2O B;  4DU4 A;  1QWL A;  3TAE A;  4B08 A;  4DTP A;  2B1E A;  4ENV A;  1QQW A;  4FJJ A;  3RMC A;  2OZS A;  4HCC A;  4ICG C;  3KD1 E;  3SUQ A;  3QEI A;  3N1E A;  1WAJ A;  3QNN A;  4JRP A;  4AI6 A;  1GWH A;  3QEP A;  4M3U A;  4KHS A;  3SJJ A;  1XMG E;  1A4E A;  2OZM A;  2YB5 A;  4ENP A;  3CFP A;  3K2O A;  4E4B A;  3SQ4 A;  4FJ8 A;  4I6J B;  4KHU A;  1XVB E;  2LF3 A;  4B31 A;  3J27 A;  2P1N B;  4M3W A;  4ENR A;  8CAT A;  1H6N A;  3E4Y A;  2MMB A;  1DGB A;  1QF7 A;  3QEW A;  2JHC A;  3P9R A;  4ENS A;  1P7Z A;  3OGK B;  3SI6 A;  2P5G A;  4FJ5 A;  4B2Y A;  2A9E A;  4ENU A;  4BFL A;  2FYO A;  4E3S A;  3NE6 A;  3HGK E;  3MKS B;  3HP9 A;  3TAG A;  1XVD E;  1QWS A;  3HGL A;  3LD8 A;  4DTU A;  2H4T A;  4DTN A;  3LZI A;  4FJX A;  3SQ0 A;  4M41 A;  1GWF A;  4E37 A;  5H37 A;  2HD0 A;  4QOL A;  3PQ4 A;  3QES A;  4CAB A;  3LDB A;  4ADO A;  1IH7 A;  4B40 A;  4M3Z A;  2ATQ A;  4FJK A;  1P22 A;  1XVE E;  1XVF E;  2K5S A;  1IG9 A;  3SVI A;  1FZH E;  1F4J A;  2XF2 A;  3TTX A;  4FJL A;  4QON A;  4DTO A;  4BLC A;  1FZ5 E;  4KHN A;  3DY5 A;  3L8B A;  3TTT A;  4RG8 A;  2RKH A;  1MMO G;  1M85 A;  2CAG A;  3TAB A;  1GGJ A;  2P1P B;  3RMB A;  4M3R A;  4M42 A;  3SQ1 A;  4DU3 A;  1FZ2 E;  4QOP A;  3C6N B;  1NEX B;  3LZJ A;  4JRQ A;  1FPO A;  4J2E A;  3TTW A;  2B8I A;  1GWE A;  3VU3 A;  2FW3 A;  1P81 A;  2RCU A;  3SCX A;  2P5O A;  3SUP A;  4AKH A;  3L0M A;  4FJM A;  3J7B A;  4M3T A;  1E93 A;  3C95 A;  2B7M A;  4ENQ A;  1MQF A;  2LF6 A;  3UIQ A;  4DTJ A;  1GGF A;  4KI6 A;  3ZJ5 A;  4FK2 A;  2OVP B;  1H7K A;  1FZ9 E;  4B7H A;  1WAF A;  4KHQ A;  3L1N A;  1XVG E;  4DTX A;  4BIM A;  4J2A A;  3NWL A;  3S9H A;  1CLQ A;  2JHA A;  1IPH A;  2MZW B;  3KD5 E;  3P9Q A;  1XMF E;  5IZ7 A;  4X5M A;  4JS5 A;  3QET A;  1P7Y A;  2E31 A;  2MW2 A;  1XU3 E;  2QXF A;  3OGL B;  4RNG A;  2ISA A;  4M45 A;  2VIX A;  4KHW A;  2PFT A;  4KHY A;  3E4W A;  3C6P B;  4AUL A;  1DGF A;  4EPH A;  4FVM A;  4B7A A;  1FZ1 E;  3LDS A;  4DTR A;  4JS4 A;  2VJ4 A;  2DY4 A;  1FYZ E;  3HB6 A;  3SPZ A;  3C94 A;  1CF9 A;  1JW2 A;  4AJ9 A;  4ENT A;  2JH8 A;  3C6O B;  3CFO A;  4I9L A;  1XVC E;  3NAE A;  3QER A;  2P1M B;  4DTM A;  3SUN A;  3OGM B;  3WSO A;  3SUO A;  4AUM A;  3RWU A;  5BV2 P;  3TTU A;  1XMH E;  3QNO A;  4IT5 A;  4FK4 A;  4B7G A;  3NGI A;  4AUE A;  3TAF A;  4QOQ A;  1DGG A;  4B7F A;  4EP9 A;  3UO2 A;  3QEV A;  4AUN A;  1FZI E;  2J2M A;  4FJH A;  3RGP A;  2IQF A; 
#chains in the Genus database with same CATH homology
 1FZ9 E;  3LD8 A;  4X5N A;  1XL3 C;  3NCI A;  2H4T A;  1WAF A;  4DTU A;  4DTN A;  1MHY G;  1TH3 A;  1DGH A;  4B7H A;  1MTY G;  3LZI A;  3SPY A;  1FZ7 E;  4EYW A;  4FJX A;  4FJ7 A;  4KHQ A;  4FJG A;  3L1N A;  7CAT A;  3SQ2 A;  4M41 A;  3CFR A;  3SQ0 A;  3SNN A;  1XVG E;  4DTX A;  5H37 A;  2OVQ B;  4J2A A;  2HD0 A;  3NHG A;  3NWL A;  1FZ8 E;  4ADN A;  3TL8 B;  1FZ6 E;  5IBK B;  3QES A;  3S9H A;  1CLQ A;  1FZ4 E;  2JHA A;  3LDB A;  2MZW B;  4ADO A;  3KD5 E;  1TH4 A;  1TGU A;  1XMF E;  4FJ9 A;  5IZ7 A;  4X5M A;  4GAM C;  1IH7 A;  4JS5 A;  3QET A;  4DTS A;  4M3Z A;  2ATQ A;  2P1Q B;  3RMD A;  4FJK A;  3CQ8 A;  3L2O B;  4DU4 A;  1P22 A;  2E31 A;  1XVE E;  1TH2 A;  1XVF E;  1XU3 E;  1XU5 E;  4J2D A;  3TAE A;  1IG9 A;  2E32 A;  2QXF A;  4B08 A;  4DTP A;  3OGL B;  2B1E A;  4RNG A;  3SVI A;  1QQW A;  1FZH E;  2VIX A;  2VJ5 A;  4M45 A;  3RMC A;  4FJJ A;  2DTU A;  4KHW A;  2PFT A;  2JH9 A;  3N1B A;  4KHY A;  4FJL A;  4FJN A;  2OZS A;  4RL5 A;  5GKN A;  4DTO A;  4BLC A;  3E4W A;  4DU1 A;  4HCC A;  3C6P B;  4AKG A;  3KD1 E;  3SUQ A;  1FZ3 E;  1FZ5 E;  3N1E A;  1WAJ A;  3QEI A;  4KHN A;  3L8B A;  4RG8 A;  3QNN A;  1DGF A;  4JRP A;  4EPH A;  1FZ0 E;  4I9Q A;  4AI6 A;  1MMO G;  4FVM A;  1FZ1 E;  3LDS A;  4DTR A;  1MHZ G;  4JS4 A;  3V7D B;  2VJ4 A;  3QEP A;  2DY4 A;  3TAB A;  1Q9X A;  1FYZ E;  4M3U A;  4QNC A;  4KHS A;  2P1P B;  3RMB A;  3SPZ A;  3C94 A;  4M3R A;  1XMG E;  3SJJ A;  4M42 A;  3SQ1 A;  2OZM A;  2OVR B;  2YB5 A;  4DU3 A;  1FZ2 E;  2JH8 A;  3C6N B;  3C6O B;  3CFO A;  1FS1 A;  4I9L A;  1NEX B;  3LZJ A;  1XVC E;  3NAE A;  4JRQ A;  1LDK E;  2P1M B;  4DTM A;  3QER A;  3SUN A;  3OGM B;  4J2E A;  3WSO A;  3SUO A;  3CFP A;  4HCB A;  3K2O A;  3J2P A;  4E4B A;  3RWU A;  3RGS A;  3SQ4 A;  4FJ8 A;  4I6J B;  3RE8 A;  3HL8 A;  2B8I A;  4KHU A;  4QND A;  1XVB E;  4J2B A;  2JHP A;  2LF3 A;  4M3X A;  2P1O B;  3NDK A;  2FW3 A;  3J27 A;  2RCU A;  3SCX A;  1Q9Y A;  2P1N B;  1XMH E;  2P5O A;  4M3W A;  4M3Y A;  8CAT A;  3SUP A;  3QNO A;  3E4Y A;  4KI4 A;  2MMB A;  2DEB A;  3RGP A;  3TJY A;  1DGB A;  4FK4 A;  4B7G A;  3QEW A;  2JHC A;  3NGI A;  3L0M A;  5IRE A;  4AKH A;  4FJM A;  4FJI A;  2PFV A;  3TAF A;  3OGK B;  3SI6 A;  3J7B A;  2P5G A;  4M3T A;  4FK0 A;  3C95 A;  4FJ5 A;  2B7M A;  2OYQ A;  3QEX A;  2FYO A;  4E3S A;  1DGH B;  2LF6 A;  1DGG A;  4B7F A;  4EP9 A;  3NE6 A;  3HGK E;  3MKS B;  3RMA A;  3UIQ A;  4DTJ A;  3QEV A;  3HP9 A;  4KI6 A;  3TAG A;  1FZI E;  1XVD E;  1FXX A;  4FJH A;  4FK2 A;  2JPN A;  2OVP B;  4AKI A;  3HGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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