3E4WA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal form.
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
303
structure length
303
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
source organism Mycobacterium avium subsp. paratuberculosis
molecule tags Oxidoreductase
molecule keywords Putative uncharacterized protein
total genus 91
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4wA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4wA02
3E4WA 1QQWA 3RE8A 1TH4A 1DGFA 4B7FA 1TH2A 4BLCA 1DGHA 1TGUA 3J7BA 1DGBA 1TH3A 5GKNA 4B7GA 3RGSA 1DGHB 4B7HA 8CATA 1DGGA 3NWLA 3E4YA 3RGPA 7CATA
chains in the Genus database with same CATH superfamily
2K5SA 4QNCA 4RNGA 2OVRB 2IUFA 1XVEE 2VJ4A 1MTYG 4ADNA 1H7KA 4QORA 3SPYA 3UO2A 4DTUA 4B7GA 2J2MA 3TTXA 3NE6A 4E4BA 1GWEA 2XF2A 4AUMA 4FJMA 4KI6A 4EP9A 4AKGA 4KI4A 4J2AA 3C94A 2PFTA 4CABA 4FJGA 4QOOA 2P1NB 3J27A 2P1PB 1GGEA 4M3UA 4QOPA 3NGIA 3TAFA 2JH8A 1DGHB 1H6NA 1P81A 4GAMC 4DTJA 4B7HA 2E32A 4DU3A 4DTMA 2XQ1A 3E4YA 4DU4A 2E31A 3K2OA 2MZWB 4B7FA 4KHYA 3CQ8A 3SVIA 1GGHA 4J2BA 3SUPA 4ENUA 1P7ZA 3TTVA 1SI8A 2P5GA 1NEXB 3SQ1A 3CFPA 4M3RA 4ENRA 2JHPA 1FPOA 4FVMA 3VU3A 2OZMA 1DGBA 2LF3A 1XVBE 2PFVA 4FJ7A 1FZ2E 2FW3A 3TL8B 3QNOA 3J2PA 2RKHA 4B40A 3HP9A 2JPNA 3TTTA 4AUNA 5H37A 1FZ1E 3NAEA 2OYQA 2QXFA 3P9SA 3SCXA 4KHSA 1FXXA 3WSOA 4QOMA 3LDBA 2P1QB 3RMCA 2JQTA 4DTNA 1FZ3E 4M3XA 3C6NB 3OGMB 3QESA 1HBZA 4AJ9A 2P1MB 1IH7A 5IZ7A 4KHWA 4EYWA 3TTWA 4AKHA 3OGKB 3ZJ5A 4ENPA 3RGSA 3LZJA 4ADOA 1MHYG 4AUEA 1IPHA 1A4EA 3QERA 4JS5A 7CATA 4QOLA 1DGFA 4X5MA 2B1EA 3J7BA 1TGUA 1XMFE 1QWSA 2ATQA 3HB6A 4DTOA 3SQ2A 2ISAA 1WAJA 3SPZA 4I9LA 1LDKE 5IBKB 1SY7A 3HGKE 5IREA 3QEIA 3QNNA 2A9EA 3QEXA 4BLCA 3C95A 3TJYA 4QONA 2P5OA 3SQ0A 4ENTA 3PQ7A 2DTUA 3RMAA 1U5UA 4I9QA 3CFRA 1XVFE 1P80A 4B7AA 3SUQA 3QETA 4AI6A 1TH4A 3TAGA 1E93A 4FJKA 3NCIA 3N1BA 4X5NA 4FJHA 4ENWA 1QWMA 1FZ7E 3TABA 3KD1E 3HL8A 4DTPA 3P9PA 2LF6A 1FZ9E 4FK2A 3BVOA 2VIXA 4B31A 3E4WA 3SI6A 4E3SA 3OGLB 3CFOA 4QOQA 1FZ4E 1MHZG 1GWFA 1TH3A 4J2DA 4KHUA 4JRPA 1GWHA 2MW2A 4I6JB 3SQ4A 1IG9A 1FZ8E 4FJ5A 3NHGA 2RCUA 4M3ZA 3RGPA 3LDSA 3RE8A 4FJLA 2FYOA 3PQ5A 3SUNA 4JS4A 1FZ0E 2DEBA 2OVPB 1GGKA 3L1NA 1F4JA 3QEPA 4RL5A 1M85A 1FZ5E 2YB5A 4ICGC 4FJ8A 4KHNA 4BFLA 4J2EA 4HCBA 2MMBA 1P7YA 2OVQB 3S9HA 1FZ6E 1QF7A 2P1OB 4FJ9A 4HCCA 3DY5A 2OZSA 4B2YA 4BIMA 4ENQA 3NWLA 3LZIA 2JHCA 3P9RA 1XVCE 1TH2A 1N1CA 4M41A 1CF9A 1P22A 1GGFA 4DTRA 1DGHA 1XL3C 4M45A 4M3TA 4M42A 4DU1A 3HGLA 2IQFA 3TTUA 3L2OB 3PQ4A 3KD5E 3QEVA 1Q9XA 3PQ2A 3PQ8A 2B7MA 1MQFA 4ENVA 3C6PB 1XMHE 4FJXA 4FK0A 2JHAA 4M3WA 4M3YA 1XU3E 4E37A 3UO3A 4ENSA 1FS1A 2JH9A 3LD8A 1FZHE 4B5KA 2CAHA 4QNDA 3ZJ4A 1XVDE 4AULA 4FK4A 3EJ6A 1XMGE 3RMBA 1XVGE 3QEWA 1FYZE 1QWLA 3P9QA 1QQWA 2HD0A 3UIQA 4FJJA 3NDKA 3RWUA 4KHQA 1CLQA 4FJIA 2B8IA 1Q9YA 4IT5A 4DTXA 1JW2A 3V7DB 4DTSA 1GGJA 1XU5E 1FZIE 8CATA 1MMOG 3SNNA 1DGGA 5BV2P 4RG8A 3PQ3A 4AKIA 1WAFA 3SJJA 3C6OB 2VJ5A 1M7SA 1GG9A 4B08A 1NM0A 2DY4A 3SUOA 4JRQA 3RMDA 3MKSB 2CAGA 5GKNA 3N1EA 4EPHA 3PQ6A 3L0MA 3L8BA 4FJNA 3TAEA 2H4TA
chains in the Genus database with same CATH topology
3QETA 4AI6A 3HP9A 4QNCA 2JPNA 1XVCE 4RNGA 1TH4A 2OVRB 3TAGA 4M41A 1TH2A 4FJKA 1XVEE 5H37A 3NCIA 1P22A 3N1BA 1FZ1E 4X5NA 2VJ4A 3NAEA 2OYQA 2QXFA 1MTYG 4DTRA 4ADNA 1DGHA 1XL3C 4M45A 1FZ7E 3TABA 4M3TA 3KD1E 3SPYA 3HL8A 4M42A 3SCXA 4DU1A 3HGLA 4FJHA 1FXXA 4KHSA 3WSOA 4DTUA 3L2OB 3LDBA 4B7GA 4DTPA 3KD5E 3NE6A 4E4BA 3QEVA 1Q9XA 2LF6A 1FZ9E 2B7MA 2P1QB 3RMCA 4FJMA 4KI6A 4DTNA 4FK2A 4EP9A 3C6PB 1FZ3E 4KI4A 1XMHE 4AKGA 4J2AA 4M3XA 4FJXA 2VIXA 3E4WA 3C6NB 4FK0A 3C94A 2JHAA 4M3WA 4M3YA 2PFTA 3SI6A 1XU3E 3OGMB 3QESA 4FJGA 2P1NB 4E3SA 3J27A 2P1MB 1FS1A 1IH7A 2P1PB 3OGLB 3CFOA 5IZ7A 4KHWA 4EYWA 1FZ4E 4M3UA 1MHZG 4AKHA 2JH9A 1TH3A 3NGIA 3TAFA 3LD8A 4J2DA 3OGKB 1FZHE 4KHUA 4JRPA 3RGSA 2JH8A 3LZJA 1DGHB 4GAMC 4I6JB 4DTJA 4QNDA 4B7HA 4ADOA 1XVDE 3SQ4A 2E32A 1IG9A 4FK4A 4DU3A 1XMGE 1MHYG 4DTMA 3RMBA 3QERA 1FZ8E 1XVGE 3E4YA 3NHGA 1FYZE 4JS5A 4DU4A 2RCUA 3QEWA 2E31A 4FJ5A 4M3ZA 3RGPA 7CATA 3LDSA 3K2OA 1QQWA 3RE8A 1DGFA 2MZWB 2HD0A 4X5MA 4B7FA 4FJLA 4KHYA 3UIQA 4FJJA 3NDKA 3CQ8A 3RWUA 2B1EA 4KHQA 1CLQA 4FJIA 1TGUA 1XMFE 3SVIA 2FYOA 2B8IA 1Q9YA 3J7BA 4J2BA 4DTXA 3SUNA 3SUPA 2ATQA 4JS4A 4DTOA 1FZ0E 2DEBA 3SQ2A 2P5GA 3V7DB 1NEXB 2OVPB 4DTSA 3SQ1A 3CFPA 1WAJA 3L1NA 1XU5E 4I9LA 3SPZA 1FZIE 8CATA 1MMOG 1LDKE 3QEPA 3SNNA 4RL5A 5IBKB 3HGKE 1DGGA 4RG8A 5IREA 1FZ5E 3QEIA 2YB5A 3QNNA 4M3RA 3QEXA 4AKIA 1WAFA 4FJ8A 3SJJA 4BLCA 4KHNA 3C95A 3C6OB 2VJ5A 2JHPA 3TJYA 4J2EA 2P5OA 4HCBA 4FVMA 3SQ0A 2MMBA 4B08A 2DY4A 2OZMA 1DGBA 3SUOA 4JRQA 2OVQB 2DTUA 3RMAA 2LF3A 4I9QA 3S9HA 3RMDA 1XVBE 3MKSB 1FZ6E 3CFRA 5GKNA 3N1EA 2PFVA 2P1OB 1XVFE 1FZ2E 4FJ7A 4EPHA 2FW3A 3TL8B 4FJ9A 4HCCA 3QNOA 2OZSA 3J2PA 3L0MA 3L8BA 3SUQA 4FJNA 3TAEA 2H4TA 3NWLA 3LZIA 2JHCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E4W A;  1QQW A;  3RE8 A;  1TH4 A;  1DGF A;  4B7F A;  1TH2 A;  4BLC A;  1DGH A;  1TGU A;  3J7B A;  1DGB A;  1TH3 A;  5GKN A;  4B7G A;  3RGS A;  1DGH B;  4B7H A;  8CAT A;  1DGG A;  3NWL A;  3E4Y A;  3RGP A;  7CAT A; 
#chains in the Genus database with same CATH topology
 2K5S A;  4QNC A;  4RNG A;  2OVR B;  2IUF A;  1XVE E;  2VJ4 A;  1MTY G;  4ADN A;  1H7K A;  4QOR A;  3SPY A;  3UO2 A;  4DTU A;  4B7G A;  2J2M A;  3TTX A;  3NE6 A;  4E4B A;  1GWE A;  2XF2 A;  4AUM A;  4FJM A;  4KI6 A;  4EP9 A;  4AKG A;  4KI4 A;  4J2A A;  3C94 A;  2PFT A;  4CAB A;  4FJG A;  4QOO A;  2P1N B;  3J27 A;  2P1P B;  1GGE A;  4M3U A;  4QOP A;  3NGI A;  3TAF A;  2JH8 A;  1DGH B;  1H6N A;  1P81 A;  4GAM C;  4DTJ A;  4B7H A;  2E32 A;  4DU3 A;  4DTM A;  2XQ1 A;  3E4Y A;  4DU4 A;  2E31 A;  3K2O A;  2MZW B;  4B7F A;  4KHY A;  3CQ8 A;  3SVI A;  1GGH A;  4J2B A;  3SUP A;  4ENU A;  1P7Z A;  3TTV A;  1SI8 A;  2P5G A;  1NEX B;  3SQ1 A;  3CFP A;  4M3R A;  4ENR A;  2JHP A;  1FPO A;  4FVM A;  3VU3 A;  2OZM A;  1DGB A;  2LF3 A;  1XVB E;  2PFV A;  4FJ7 A;  1FZ2 E;  2FW3 A;  3TL8 B;  3QNO A;  3J2P A;  2RKH A;  4B40 A;  3HP9 A;  2JPN A;  3TTT A;  4AUN A;  5H37 A;  1FZ1 E;  3NAE A;  2OYQ A;  2QXF A;  3P9S A;  3SCX A;  4KHS A;  1FXX A;  3WSO A;  4QOM A;  3LDB A;  2P1Q B;  3RMC A;  2JQT A;  4DTN A;  1FZ3 E;  4M3X A;  3C6N B;  3OGM B;  3QES A;  1HBZ A;  4AJ9 A;  2P1M B;  1IH7 A;  5IZ7 A;  4KHW A;  4EYW A;  3TTW A;  4AKH A;  3OGK B;  3ZJ5 A;  4ENP A;  3RGS A;  3LZJ A;  4ADO A;  1MHY G;  4AUE A;  1IPH A;  1A4E A;  3QER A;  4JS5 A;  7CAT A;  4QOL A;  1DGF A;  4X5M A;  2B1E A;  3J7B A;  1TGU A;  1XMF E;  1QWS A;  2ATQ A;  3HB6 A;  4DTO A;  3SQ2 A;  2ISA A;  1WAJ A;  3SPZ A;  4I9L A;  1LDK E;  5IBK B;  1SY7 A;  3HGK E;  5IRE A;  3QEI A;  3QNN A;  2A9E A;  3QEX A;  4BLC A;  3C95 A;  3TJY A;  4QON A;  2P5O A;  3SQ0 A;  4ENT A;  3PQ7 A;  2DTU A;  3RMA A;  1U5U A;  4I9Q A;  3CFR A;  1XVF E;  1P80 A;  4B7A A;  3SUQ A;  3QET A;  4AI6 A;  1TH4 A;  3TAG A;  1E93 A;  4FJK A;  3NCI A;  3N1B A;  4X5N A;  4FJH A;  4ENW A;  1QWM A;  1FZ7 E;  3TAB A;  3KD1 E;  3HL8 A;  4DTP A;  3P9P A;  2LF6 A;  1FZ9 E;  4FK2 A;  3BVO A;  2VIX A;  4B31 A;  3E4W A;  3SI6 A;  4E3S A;  3OGL B;  3CFO A;  4QOQ A;  1FZ4 E;  1MHZ G;  1GWF A;  1TH3 A;  4J2D A;  4KHU A;  4JRP A;  1GWH A;  2MW2 A;  4I6J B;  3SQ4 A;  1IG9 A;  1FZ8 E;  4FJ5 A;  3NHG A;  2RCU A;  4M3Z A;  3RGP A;  3LDS A;  3RE8 A;  4FJL A;  2FYO A;  3PQ5 A;  3SUN A;  4JS4 A;  1FZ0 E;  2DEB A;  2OVP B;  1GGK A;  3L1N A;  1F4J A;  3QEP A;  4RL5 A;  1M85 A;  1FZ5 E;  2YB5 A;  4ICG C;  4FJ8 A;  4KHN A;  4BFL A;  4J2E A;  4HCB A;  2MMB A;  1P7Y A;  2OVQ B;  3S9H A;  1FZ6 E;  1QF7 A;  2P1O B;  4FJ9 A;  4HCC A;  3DY5 A;  2OZS A;  4B2Y A;  4BIM A;  4ENQ A;  3NWL A;  3LZI A;  2JHC A;  3P9R A;  1XVC E;  1TH2 A;  1N1C A;  4M41 A;  1CF9 A;  1P22 A;  1GGF A;  4DTR A;  1DGH A;  1XL3 C;  4M45 A;  4M3T A;  4M42 A;  4DU1 A;  3HGL A;  2IQF A;  3TTU A;  3L2O B;  3PQ4 A;  3KD5 E;  3QEV A;  1Q9X A;  3PQ2 A;  3PQ8 A;  2B7M A;  1MQF A;  4ENV A;  3C6P B;  1XMH E;  4FJX A;  4FK0 A;  2JHA A;  4M3W A;  4M3Y A;  1XU3 E;  4E37 A;  3UO3 A;  4ENS A;  1FS1 A;  2JH9 A;  3LD8 A;  1FZH E;  4B5K A;  2CAH A;  4QND A;  3ZJ4 A;  1XVD E;  4AUL A;  4FK4 A;  3EJ6 A;  1XMG E;  3RMB A;  1XVG E;  3QEW A;  1FYZ E;  1QWL A;  3P9Q A;  1QQW A;  2HD0 A;  3UIQ A;  4FJJ A;  3NDK A;  3RWU A;  4KHQ A;  1CLQ A;  4FJI A;  2B8I A;  1Q9Y A;  4IT5 A;  4DTX A;  1JW2 A;  3V7D B;  4DTS A;  1GGJ A;  1XU5 E;  1FZI E;  8CAT A;  1MMO G;  3SNN A;  1DGG A;  5BV2 P;  4RG8 A;  3PQ3 A;  4AKI A;  1WAF A;  3SJJ A;  3C6O B;  2VJ5 A;  1M7S A;  1GG9 A;  4B08 A;  1NM0 A;  2DY4 A;  3SUO A;  4JRQ A;  3RMD A;  3MKS B;  2CAG A;  5GKN A;  3N1E A;  4EPH A;  3PQ6 A;  3L0M A;  3L8B A;  4FJN A;  3TAE A;  2H4T A; 
#chains in the Genus database with same CATH homology
 3QET A;  4AI6 A;  3HP9 A;  4QNC A;  2JPN A;  1XVC E;  4RNG A;  1TH4 A;  2OVR B;  3TAG A;  4M41 A;  1TH2 A;  4FJK A;  1XVE E;  5H37 A;  3NCI A;  1P22 A;  3N1B A;  1FZ1 E;  4X5N A;  2VJ4 A;  3NAE A;  2OYQ A;  2QXF A;  1MTY G;  4DTR A;  4ADN A;  1DGH A;  1XL3 C;  4M45 A;  1FZ7 E;  3TAB A;  4M3T A;  3KD1 E;  3SPY A;  3HL8 A;  4M42 A;  3SCX A;  4DU1 A;  3HGL A;  4FJH A;  1FXX A;  4KHS A;  3WSO A;  4DTU A;  3L2O B;  3LDB A;  4B7G A;  4DTP A;  3KD5 E;  3NE6 A;  4E4B A;  3QEV A;  1Q9X A;  2LF6 A;  1FZ9 E;  2B7M A;  2P1Q B;  3RMC A;  4FJM A;  4KI6 A;  4DTN A;  4FK2 A;  4EP9 A;  3C6P B;  1FZ3 E;  4KI4 A;  1XMH E;  4AKG A;  4J2A A;  4M3X A;  4FJX A;  2VIX A;  3E4W A;  3C6N B;  4FK0 A;  3C94 A;  2JHA A;  4M3W A;  4M3Y A;  2PFT A;  3SI6 A;  1XU3 E;  3OGM B;  3QES A;  4FJG A;  2P1N B;  4E3S A;  3J27 A;  2P1M B;  1FS1 A;  1IH7 A;  2P1P B;  3OGL B;  3CFO A;  5IZ7 A;  4KHW A;  4EYW A;  1FZ4 E;  4M3U A;  1MHZ G;  4AKH A;  2JH9 A;  1TH3 A;  3NGI A;  3TAF A;  3LD8 A;  4J2D A;  3OGK B;  1FZH E;  4KHU A;  4JRP A;  3RGS A;  2JH8 A;  3LZJ A;  1DGH B;  4GAM C;  4I6J B;  4DTJ A;  4QND A;  4B7H A;  4ADO A;  1XVD E;  3SQ4 A;  2E32 A;  1IG9 A;  4FK4 A;  4DU3 A;  1XMG E;  1MHY G;  4DTM A;  3RMB A;  3QER A;  1FZ8 E;  1XVG E;  3E4Y A;  3NHG A;  1FYZ E;  4JS5 A;  4DU4 A;  2RCU A;  3QEW A;  2E31 A;  4FJ5 A;  4M3Z A;  3RGP A;  7CAT A;  3LDS A;  3K2O A;  1QQW A;  3RE8 A;  1DGF A;  2MZW B;  2HD0 A;  4X5M A;  4B7F A;  4FJL A;  4KHY A;  3UIQ A;  4FJJ A;  3NDK A;  3CQ8 A;  3RWU A;  2B1E A;  4KHQ A;  1CLQ A;  4FJI A;  1TGU A;  1XMF E;  3SVI A;  2FYO A;  2B8I A;  1Q9Y A;  3J7B A;  4J2B A;  4DTX A;  3SUN A;  3SUP A;  2ATQ A;  4JS4 A;  4DTO A;  1FZ0 E;  2DEB A;  3SQ2 A;  2P5G A;  3V7D B;  1NEX B;  2OVP B;  4DTS A;  3SQ1 A;  3CFP A;  1WAJ A;  3L1N A;  1XU5 E;  4I9L A;  3SPZ A;  1FZI E;  8CAT A;  1MMO G;  1LDK E;  3QEP A;  3SNN A;  4RL5 A;  5IBK B;  3HGK E;  1DGG A;  4RG8 A;  5IRE A;  1FZ5 E;  3QEI A;  2YB5 A;  3QNN A;  4M3R A;  3QEX A;  4AKI A;  1WAF A;  4FJ8 A;  3SJJ A;  4BLC A;  4KHN A;  3C95 A;  3C6O B;  2VJ5 A;  2JHP A;  3TJY A;  4J2E A;  2P5O A;  4HCB A;  4FVM A;  3SQ0 A;  2MMB A;  4B08 A;  2DY4 A;  2OZM A;  1DGB A;  3SUO A;  4JRQ A;  2OVQ B;  2DTU A;  3RMA A;  2LF3 A;  4I9Q A;  3S9H A;  3RMD A;  1XVB E;  3MKS B;  1FZ6 E;  3CFR A;  5GKN A;  3N1E A;  2PFV A;  2P1O B;  1XVF E;  1FZ2 E;  4FJ7 A;  4EPH A;  2FW3 A;  3TL8 B;  4FJ9 A;  4HCC A;  3QNO A;  2OZS A;  3J2P A;  3L0M A;  3L8B A;  3SUQ A;  4FJN A;  3TAE A;  2H4T A;  3NWL A;  3LZI A;  2JHC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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