3E4WA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. p2(1)2(1)2(1) crystal form.
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
303
structure length
303
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGVDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein
publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
source organism Mycobacterium avium subsp. paratuberculosis
molecule tags Oxidoreductase
total genus 91
structure length 303
sequence length 303
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4wA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4wA02
1TGUA 5GKNA 1DGGA 4B7HA 1DGHB 4BLCA 1TH3A 4B7FA 8CATA 3J7BA 7CATA 1DGFA 1QQWA 3E4WA 3E4YA 1TH2A 3NWLA 3RGSA 1DGHA 3RGPA 4B7GA 1DGBA 1TH4A 3RE8A
chains in the Genus database with same CATH superfamily
3L2OB 4AJ9A 1GG9A 4HCBA 1Q9XA 3KD1E 1XU3E 4DTJA 4ENTA 4M3WA 4KI6A 2E31A 1MHZG 3EJ6A 5IZ7A 4QNDA 4FJ5A 4KHWA 3BVOA 4EPHA 2P5GA 4ENRA 2FW3A 1XVEE 4AUEA 3VU3A 1MHYG 1GGEA 2B8IA 4DTSA 4ADOA 3J27A 3NAEA 4B2YA 3CFRA 3K2OA 3QERA 4J2BA 4X5NA 4KHUA 2B7MA 4I6JB 1XVDE 4M3ZA 3SPYA 2E32A 4FJIA 1IPHA 3NDKA 1FPOA 3SCXA 2P5OA 2RKHA 1WAJA 3P9QA 3UIQA 1QF7A 1FZ0E 3PQ2A 3TTWA 4KHQA 4DU4A 1E93A 3OGKB 3E4YA 1LDKE 4FK2A 2IUFA 4BFLA 2ISAA 4ENPA 1H7KA 4B7AA 2P1PB 2A9EA 4QORA 2JQTA 3SVIA 3PQ4A 3P9RA 1FZ9E 4QOOA 1MQFA 1M7SA 4DU3A 3SUPA 1FZ2E 4BLCA 1FZHE 1FZ5E 1GGJA 1FZIE 2QXFA 2LF3A 4M3RA 3NHGA 2OZSA 2JH9A 3NGIA 4KHSA 4FK0A 1H6NA 3TJYA 4EYWA 1IG9A 1TGUA 3HGLA 1XMGE 1XMFE 4B7HA 4BIMA 3UO2A 4AULA 1CF9A 4B7FA 2B1EA 3LZIA 4FK4A 3DY5A 3OGMB 4ENQA 1FZ7E 4FJKA 1M85A 3QEVA 1GWFA 1N1CA 2DTUA 1QWSA 2P1MB 4M3TA 3PQ8A 2FYOA 4HCCA 1GWEA 2MMBA 3RWUA 3PQ5A 3TTUA 1QWMA 1FXXA 4AKHA 1DGBA 2VJ4A 4AUNA 4FJGA 4DTMA 1FYZE 4X5MA 3C6NB 2JHPA 4M3YA 4AI6A 7CATA 2H4TA 2LF6A 1GGHA 3SUOA 4E3SA 1FZ3E 3SJJA 3PQ6A 1GWHA 3C95A 3RGSA 3C94A 3SUQA 3RGPA 3QETA 3QESA 4I9LA 3S9HA 4ENUA 4M3UA 4DTOA 3SI6A 4RL5A 4IT5A 4J2EA 4KHYA 3WSOA 4DU1A 4ADNA 4ENSA 3TL8B 3CFOA 4DTXA 3SPZA 2VIXA 2OVRB 5GKNA 3ZJ4A 4RNGA 4ENVA 2HD0A 1U5UA 1P80A 4KI4A 3RMDA 3MKSB 1CLQA 2OZMA 4FJ8A 1DGHA 1NEXB 4AKGA 4GAMC 4KHNA 3L1NA 2MZWB 2MW2A 1HBZA 4I9QA 3CQ8A 2OYQA 1P7ZA 4RG8A 1TH3A 1P81A 3QEWA 2ATQA 4FJMA 1DGFA 3RMAA 1IH7A 4J2AA 3QNNA 4DTNA 1A4EA 1P22A 5IBKB 3QEPA 3LDSA 3TTXA 3N1BA 3TAFA 2XQ1A 4ICGC 4B08A 3V7DB 4ENWA 4DTPA 3TTTA 1XMHE 1GGFA 4QNCA 3KD5E 4QOLA 4JS4A 4FJ7A 2P1OB 4E37A 3SNNA 3OGLB 2K5SA 1MMOG 1FZ1E 4B7GA 3RMBA 2JHAA 4CABA 3RMCA 2JHCA 3TAEA 3UO3A 4FJNA 2RCUA 2DY4A 3SQ4A 3PQ7A 2XF2A 3NE6A 3P9SA 3L0MA 3P9PA 3SQ0A 1FS1A 3HP9A 3SUNA 1XU5E 3SQ1A 3E4WA 3NWLA 3TAGA 1XVCE 2P1QB 4QOMA 4E4BA 1NM0A 1DGGA 5BV2P 4FJJA 2CAHA 1FZ4E 4FVMA 1FZ8E 5H37A 1WAFA 3L8BA 3HL8A 3HB6A 1F4JA 3RE8A 1QWLA 2PFTA 1XVBE 4QOPA 3NCIA 4AKIA 1SI8A 4JS5A 8CATA 3LD8A 4M42A 3C6OB 1JW2A 2P1NB 4JRPA 4DTUA 1QQWA 2DEBA 3LZJA 2J2MA 2YB5A 4FJHA 4FJXA 3C6PB 4B5KA 4B31A 4FJLA 1GGKA 3J7BA 1SY7A 2JH8A 1FZ6E 3ZJ5A 4EP9A 1XVGE 4J2DA 4FJ9A 4DTRA 1MTYG 1P7YA 4QOQA 1TH4A 2IQFA 3TTVA 4M45A 3TABA 2OVPB 1Q9YA 4M3XA 3QEIA 2OVQB 3HGKE 1DGHB 2VJ5A 3SQ2A 2PFVA 4M41A 3LDBA 4JRQA 4B40A 3PQ3A 1TH2A 2JPNA 3QNOA 1XL3C 4AUMA 3J2PA 3CFPA 2CAGA 3N1EA 4QONA 1XVFE 3QEXA 5IREA
chains in the Genus database with same CATH topology
1TGUA 5GKNA 3HGLA 3L2OB 4E4BA 1XMGE 4HCBA 1XMFE 1DGGA 4B7HA 4RNGA 4FJJA 1Q9XA 3KD1E 4B7FA 2B1EA 2HD0A 1XU3E 3LZIA 4KI4A 4DTJA 3OGMB 4M3WA 1FZ7E 3RMDA 4FJKA 4KI6A 4FK4A 3MKSB 1CLQA 2E31A 1FZ4E 4FVMA 3QEVA 1MHZG 1FZ8E 5IZ7A 2OZMA 4FJ8A 4QNDA 5H37A 1DGHA 4FJ5A 1NEXB 4KHWA 4AKGA 1WAFA 4EPHA 4GAMC 2P5GA 3L1NA 3L8BA 2P1MB 4KHNA 2DTUA 2FW3A 3HL8A 2MZWB 4M3TA 1XVEE 2FYOA 4HCCA 3RE8A 2PFTA 1MHYG 4I9QA 1XVBE 2MMBA 3CQ8A 3RWUA 3NCIA 2B8IA 2OYQA 4DTSA 4ADOA 3J27A 4AKIA 4JS5A 3NAEA 4RG8A 1TH3A 8CATA 3LD8A 4M42A 3C6OB 3QEWA 2ATQA 2P1NB 4JRPA 4DTUA 4FJMA 1DGFA 1QQWA 3RMAA 3CFRA 2DEBA 3LZJA 3K2OA 3QERA 2YB5A 4J2BA 1IH7A 4X5NA 4KHUA 1FXXA 2B7MA 4FJHA 4J2AA 4I6JB 3QNNA 4AKHA 4DTNA 1XVDE 4M3ZA 3SPYA 2E32A 1DGBA 1P22A 5IBKB 3QEPA 3LDSA 4FJIA 4FJXA 2VJ4A 3N1BA 3TAFA 4FJGA 4B08A 1FYZE 4DTMA 3NDKA 4X5MA 3SCXA 2P5OA 3V7DB 3C6NB 2JHPA 3C6PB 4DTPA 1WAJA 1XMHE 3UIQA 4FJLA 4M3YA 1FZ0E 4AI6A 3J7BA 7CATA 4QNCA 2JH8A 2H4TA 2LF6A 3KD5E 4JS4A 4KHQA 4FJ7A 2P1OB 4DU4A 3SUOA 4E3SA 3OGKB 1FZ3E 3E4YA 1LDKE 3SJJA 4FK2A 1FZ6E 3SNNA 3OGLB 4EP9A 1XVGE 3C95A 4J2DA 3RGSA 3C94A 1MMOG 1FZ1E 4FJ9A 4DTRA 3SUQA 1MTYG 3RGPA 4B7GA 2P1PB 2JHAA 3RMBA 3QETA 3RMCA 2JHCA 3SVIA 3TAEA 1TH4A 3QESA 4FJNA 2RCUA 4I9LA 4M45A 3SQ4A 2DY4A 1FZ9E 3S9HA 3TABA 2OVPB 4DU3A 1Q9YA 3QEIA 3NE6A 2OVQB 3SUPA 4M3XA 3HGKE 4M3UA 3L0MA 4DTOA 1DGHB 1FZ2E 2VJ5A 3SQ2A 4BLCA 2PFVA 3SI6A 4RL5A 1FZHE 3SQ0A 1FZ5E 1FS1A 3LDBA 4M41A 4J2EA 3HP9A 4KHYA 4JRQA 3SUNA 1XU5E 1FZIE 3SQ1A 3WSOA 2QXFA 4DU1A 3E4WA 1TH2A 2JPNA 3QNOA 1XL3C 4ADNA 2LF3A 3NWLA 4M3RA 3TL8B 3J2PA 3CFPA 3NHGA 3TAGA 2OZSA 2JH9A 3CFOA 1XVCE 2P1QB 3N1EA 3NGIA 4DTXA 4KHSA 3SPZA 2VIXA 4FK0A 1XVFE 3QEXA 3TJYA 2OVRB 4EYWA 1IG9A 5IREA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TGU A;  5GKN A;  1DGG A;  4B7H A;  1DGH B;  4BLC A;  1TH3 A;  4B7F A;  8CAT A;  3J7B A;  7CAT A;  1DGF A;  1QQW A;  3E4W A;  3E4Y A;  1TH2 A;  3NWL A;  3RGS A;  1DGH A;  3RGP A;  4B7G A;  1DGB A;  1TH4 A;  3RE8 A; 
#chains in the Genus database with same CATH topology
 3L2O B;  4AJ9 A;  1GG9 A;  4HCB A;  1Q9X A;  3KD1 E;  1XU3 E;  4DTJ A;  4ENT A;  4M3W A;  4KI6 A;  2E31 A;  1MHZ G;  3EJ6 A;  5IZ7 A;  4QND A;  4FJ5 A;  4KHW A;  3BVO A;  4EPH A;  2P5G A;  4ENR A;  2FW3 A;  1XVE E;  4AUE A;  3VU3 A;  1MHY G;  1GGE A;  2B8I A;  4DTS A;  4ADO A;  3J27 A;  3NAE A;  4B2Y A;  3CFR A;  3K2O A;  3QER A;  4J2B A;  4X5N A;  4KHU A;  2B7M A;  4I6J B;  1XVD E;  4M3Z A;  3SPY A;  2E32 A;  4FJI A;  1IPH A;  3NDK A;  1FPO A;  3SCX A;  2P5O A;  2RKH A;  1WAJ A;  3P9Q A;  3UIQ A;  1QF7 A;  1FZ0 E;  3PQ2 A;  3TTW A;  4KHQ A;  4DU4 A;  1E93 A;  3OGK B;  3E4Y A;  1LDK E;  4FK2 A;  2IUF A;  4BFL A;  2ISA A;  4ENP A;  1H7K A;  4B7A A;  2P1P B;  2A9E A;  4QOR A;  2JQT A;  3SVI A;  3PQ4 A;  3P9R A;  1FZ9 E;  4QOO A;  1MQF A;  1M7S A;  4DU3 A;  3SUP A;  1FZ2 E;  4BLC A;  1FZH E;  1FZ5 E;  1GGJ A;  1FZI E;  2QXF A;  2LF3 A;  4M3R A;  3NHG A;  2OZS A;  2JH9 A;  3NGI A;  4KHS A;  4FK0 A;  1H6N A;  3TJY A;  4EYW A;  1IG9 A;  1TGU A;  3HGL A;  1XMG E;  1XMF E;  4B7H A;  4BIM A;  3UO2 A;  4AUL A;  1CF9 A;  4B7F A;  2B1E A;  3LZI A;  4FK4 A;  3DY5 A;  3OGM B;  4ENQ A;  1FZ7 E;  4FJK A;  1M85 A;  3QEV A;  1GWF A;  1N1C A;  2DTU A;  1QWS A;  2P1M B;  4M3T A;  3PQ8 A;  2FYO A;  4HCC A;  1GWE A;  2MMB A;  3RWU A;  3PQ5 A;  3TTU A;  1QWM A;  1FXX A;  4AKH A;  1DGB A;  2VJ4 A;  4AUN A;  4FJG A;  4DTM A;  1FYZ E;  4X5M A;  3C6N B;  2JHP A;  4M3Y A;  4AI6 A;  7CAT A;  2H4T A;  2LF6 A;  1GGH A;  3SUO A;  4E3S A;  1FZ3 E;  3SJJ A;  3PQ6 A;  1GWH A;  3C95 A;  3RGS A;  3C94 A;  3SUQ A;  3RGP A;  3QET A;  3QES A;  4I9L A;  3S9H A;  4ENU A;  4M3U A;  4DTO A;  3SI6 A;  4RL5 A;  4IT5 A;  4J2E A;  4KHY A;  3WSO A;  4DU1 A;  4ADN A;  4ENS A;  3TL8 B;  3CFO A;  4DTX A;  3SPZ A;  2VIX A;  2OVR B;  5GKN A;  3ZJ4 A;  4RNG A;  4ENV A;  2HD0 A;  1U5U A;  1P80 A;  4KI4 A;  3RMD A;  3MKS B;  1CLQ A;  2OZM A;  4FJ8 A;  1DGH A;  1NEX B;  4AKG A;  4GAM C;  4KHN A;  3L1N A;  2MZW B;  2MW2 A;  1HBZ A;  4I9Q A;  3CQ8 A;  2OYQ A;  1P7Z A;  4RG8 A;  1TH3 A;  1P81 A;  3QEW A;  2ATQ A;  4FJM A;  1DGF A;  3RMA A;  1IH7 A;  4J2A A;  3QNN A;  4DTN A;  1A4E A;  1P22 A;  5IBK B;  3QEP A;  3LDS A;  3TTX A;  3N1B A;  3TAF A;  2XQ1 A;  4ICG C;  4B08 A;  3V7D B;  4ENW A;  4DTP A;  3TTT A;  1XMH E;  1GGF A;  4QNC A;  3KD5 E;  4QOL A;  4JS4 A;  4FJ7 A;  2P1O B;  4E37 A;  3SNN A;  3OGL B;  2K5S A;  1MMO G;  1FZ1 E;  4B7G A;  3RMB A;  2JHA A;  4CAB A;  3RMC A;  2JHC A;  3TAE A;  3UO3 A;  4FJN A;  2RCU A;  2DY4 A;  3SQ4 A;  3PQ7 A;  2XF2 A;  3NE6 A;  3P9S A;  3L0M A;  3P9P A;  3SQ0 A;  1FS1 A;  3HP9 A;  3SUN A;  1XU5 E;  3SQ1 A;  3E4W A;  3NWL A;  3TAG A;  1XVC E;  2P1Q B;  4QOM A;  4E4B A;  1NM0 A;  1DGG A;  5BV2 P;  4FJJ A;  2CAH A;  1FZ4 E;  4FVM A;  1FZ8 E;  5H37 A;  1WAF A;  3L8B A;  3HL8 A;  3HB6 A;  1F4J A;  3RE8 A;  1QWL A;  2PFT A;  1XVB E;  4QOP A;  3NCI A;  4AKI A;  1SI8 A;  4JS5 A;  8CAT A;  3LD8 A;  4M42 A;  3C6O B;  1JW2 A;  2P1N B;  4JRP A;  4DTU A;  1QQW A;  2DEB A;  3LZJ A;  2J2M A;  2YB5 A;  4FJH A;  4FJX A;  3C6P B;  4B5K A;  4B31 A;  4FJL A;  1GGK A;  3J7B A;  1SY7 A;  2JH8 A;  1FZ6 E;  3ZJ5 A;  4EP9 A;  1XVG E;  4J2D A;  4FJ9 A;  4DTR A;  1MTY G;  1P7Y A;  4QOQ A;  1TH4 A;  2IQF A;  3TTV A;  4M45 A;  3TAB A;  2OVP B;  1Q9Y A;  4M3X A;  3QEI A;  2OVQ B;  3HGK E;  1DGH B;  2VJ5 A;  3SQ2 A;  2PFV A;  4M41 A;  3LDB A;  4JRQ A;  4B40 A;  3PQ3 A;  1TH2 A;  2JPN A;  3QNO A;  1XL3 C;  4AUM A;  3J2P A;  3CFP A;  2CAG A;  3N1E A;  4QON A;  1XVF E;  3QEX A;  5IRE A; 
#chains in the Genus database with same CATH homology
 1TGU A;  5GKN A;  3HGL A;  3L2O B;  4E4B A;  1XMG E;  4HCB A;  1XMF E;  1DGG A;  4B7H A;  4RNG A;  4FJJ A;  1Q9X A;  3KD1 E;  4B7F A;  2B1E A;  2HD0 A;  1XU3 E;  3LZI A;  4KI4 A;  4DTJ A;  3OGM B;  4M3W A;  1FZ7 E;  3RMD A;  4FJK A;  4KI6 A;  4FK4 A;  3MKS B;  1CLQ A;  2E31 A;  1FZ4 E;  4FVM A;  3QEV A;  1MHZ G;  1FZ8 E;  5IZ7 A;  2OZM A;  4FJ8 A;  4QND A;  5H37 A;  1DGH A;  4FJ5 A;  1NEX B;  4KHW A;  4AKG A;  1WAF A;  4EPH A;  4GAM C;  2P5G A;  3L1N A;  3L8B A;  2P1M B;  4KHN A;  2DTU A;  2FW3 A;  3HL8 A;  2MZW B;  4M3T A;  1XVE E;  2FYO A;  4HCC A;  3RE8 A;  2PFT A;  1MHY G;  4I9Q A;  1XVB E;  2MMB A;  3CQ8 A;  3RWU A;  3NCI A;  2B8I A;  2OYQ A;  4DTS A;  4ADO A;  3J27 A;  4AKI A;  4JS5 A;  3NAE A;  4RG8 A;  1TH3 A;  8CAT A;  3LD8 A;  4M42 A;  3C6O B;  3QEW A;  2ATQ A;  2P1N B;  4JRP A;  4DTU A;  4FJM A;  1DGF A;  1QQW A;  3RMA A;  3CFR A;  2DEB A;  3LZJ A;  3K2O A;  3QER A;  2YB5 A;  4J2B A;  1IH7 A;  4X5N A;  4KHU A;  1FXX A;  2B7M A;  4FJH A;  4J2A A;  4I6J B;  3QNN A;  4AKH A;  4DTN A;  1XVD E;  4M3Z A;  3SPY A;  2E32 A;  1DGB A;  1P22 A;  5IBK B;  3QEP A;  3LDS A;  4FJI A;  4FJX A;  2VJ4 A;  3N1B A;  3TAF A;  4FJG A;  4B08 A;  1FYZ E;  4DTM A;  3NDK A;  4X5M A;  3SCX A;  2P5O A;  3V7D B;  3C6N B;  2JHP A;  3C6P B;  4DTP A;  1WAJ A;  1XMH E;  3UIQ A;  4FJL A;  4M3Y A;  1FZ0 E;  4AI6 A;  3J7B A;  7CAT A;  4QNC A;  2JH8 A;  2H4T A;  2LF6 A;  3KD5 E;  4JS4 A;  4KHQ A;  4FJ7 A;  2P1O B;  4DU4 A;  3SUO A;  4E3S A;  3OGK B;  1FZ3 E;  3E4Y A;  1LDK E;  3SJJ A;  4FK2 A;  1FZ6 E;  3SNN A;  3OGL B;  4EP9 A;  1XVG E;  3C95 A;  4J2D A;  3RGS A;  3C94 A;  1MMO G;  1FZ1 E;  4FJ9 A;  4DTR A;  3SUQ A;  1MTY G;  3RGP A;  4B7G A;  2P1P B;  2JHA A;  3RMB A;  3QET A;  3RMC A;  2JHC A;  3SVI A;  3TAE A;  1TH4 A;  3QES A;  4FJN A;  2RCU A;  4I9L A;  4M45 A;  3SQ4 A;  2DY4 A;  1FZ9 E;  3S9H A;  3TAB A;  2OVP B;  4DU3 A;  1Q9Y A;  3QEI A;  3NE6 A;  2OVQ B;  3SUP A;  4M3X A;  3HGK E;  4M3U A;  3L0M A;  4DTO A;  1DGH B;  1FZ2 E;  2VJ5 A;  3SQ2 A;  4BLC A;  2PFV A;  3SI6 A;  4RL5 A;  1FZH E;  3SQ0 A;  1FZ5 E;  1FS1 A;  3LDB A;  4M41 A;  4J2E A;  3HP9 A;  4KHY A;  4JRQ A;  3SUN A;  1XU5 E;  1FZI E;  3SQ1 A;  3WSO A;  2QXF A;  4DU1 A;  3E4W A;  1TH2 A;  2JPN A;  3QNO A;  1XL3 C;  4ADN A;  2LF3 A;  3NWL A;  4M3R A;  3TL8 B;  3J2P A;  3CFP A;  3NHG A;  3TAG A;  2OZS A;  2JH9 A;  3CFO A;  1XVC E;  2P1Q B;  3N1E A;  3NGI A;  4DTX A;  4KHS A;  3SPZ A;  2VIX A;  4FK0 A;  1XVF E;  3QEX A;  3TJY A;  2OVR B;  4EYW A;  1IG9 A;  5IRE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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