3E4YA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. i2(1)2(1)2(1) crystal form
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
301
structure length
301
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
molecule keywords Putative uncharacterized protein
molecule tags Oxidoreductase
source organism Mycobacterium avium subsp. paratuberculosis
total genus 86
structure length 301
sequence length 301
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4yA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4yA02
1TH3A 1TH2A 4B7HA 5GKNA 3RGSA 4BLCA 7CATA 1TH4A 1QQWA 3RE8A 1TGUA 4B7FA 1DGGA 1DGHA 3E4YA 1DGHB 3NWLA 3J7BA 4B7GA 3RGPA 1DGFA 3E4WA 1DGBA 8CATA
chains in the Genus database with same CATH superfamily
4M41A 1XVFE 3SPYA 4DTMA 1SY7A 3S9HA 1H6NA 4QORA 2P1QB 4DTUA 4GAMC 1NM0A 3TTUA 1SI8A 4M45A 3RGPA 2B7MA 3E4WA 4DTNA 1GWHA 2P5GA 2ATQA 4QOMA 2A9EA 1FZ4E 4DTSA 1FZIE 1LDKE 2E31A 4FJHA 4M3ZA 1TH4A 4ENWA 4ENPA 3NWLA 3TJYA 2DY4A 4ICGC 2DTUA 3HGLA 1DGBA 1XL3C 3SUPA 1QF7A 1TH3A 4ENSA 3SQ2A 2OZMA 2E32A 4M3UA 2LF3A 3HB6A 3OGKB 2K5SA 4DTPA 4JRPA 3L0MA 4FJNA 3SUOA 2JPNA 3SQ0A 1NEXB 5IREA 3UIQA 2QXFA 1Q9XA 1FS1A 3NHGA 4QOQA 4B40A 4QOPA 1GGEA 1FZHE 3NE6A 4DU4A 2FYOA 2ISAA 4FK4A 4J2EA 1P80A 4I9LA 2MW2A 3PQ4A 4BFLA 1XU3E 1IG9A 3LDSA 2PFTA 3RMDA 4I9QA 1IPHA 1GGJA 2PFVA 3C95A 4QNCA 3ZJ5A 3L1NA 3QNOA 3NAEA 2B8IA 4B08A 3LZJA 4B5KA 3SPZA 1FZ9E 1CLQA 2OZSA 2CAGA 3UO2A 1XVGE 1P7YA 3CQ8A 2P5OA 3ZJ4A 4AUNA 1WAFA 4ENVA 4B7HA 1GGFA 1M7SA 3RGSA 4KHUA 4BLCA 3WSOA 1FZ6E 1GWEA 3TTVA 4DTRA 3TAGA 2VIXA 3P9QA 4JS4A 4RL5A 4KHQA 4EYWA 2CAHA 1WAJA 1GGKA 1GWFA 3RMBA 3SNNA 4AULA 4QOOA 3TTTA 3LZIA 3SJJA 1M85A 4AKHA 4BIMA 1FZ0E 3QEXA 3KD1E 1Q9YA 4FJMA 2JHPA 2DEBA 4X5NA 4FVMA 3RMAA 2P1MB 4KHSA 1P7ZA 4B2YA 2P1PB 2RCUA 4FJ7A 1FZ1E 7CATA 2FW3A 3DY5A 2OVPB 1P22A 4FJJA 4E3SA 4FJIA 1HBZA 1CF9A 5BV2P 1P81A 4FJ5A 3J7BA 4B7AA 4JS5A 2P1NB 1QWLA 4M3TA 3TL8B 4DTXA 4DU1A 3PQ5A 2JHAA 4FJ9A 4ENRA 4B31A 4KHYA 3N1BA 3PQ7A 2OVRB 2RKHA 1A4EA 3CFPA 1MQFA 3MKSB 1XMGE 3QESA 2OYQA 4DU3A 4AJ9A 4I6JB 4M42A 2JH9A 1FZ7E 3SUNA 3K2OA 4AKIA 1FXXA 2VJ5A 3PQ8A 3P9RA 2J2MA 3VU3A 4AI6A 2XQ1A 4KHWA 1DGFA 3C94A 1FYZE 3SI6A 2JQTA 3RMCA 4DTOA 4FJ8A 1JW2A 4RNGA 4ADNA 3C6NB 1FZ2E 3HGKE 3QEWA 2OVQB 3CFRA 1QQWA 3OGMB 3QEPA 3NCIA 2XF2A 3TTWA 3L2OB 4M3WA 2B1EA 2P1OB 4J2DA 3HL8A 3PQ6A 5IBKB 3QEVA 3OGLB 3J27A 4FK2A 3C6PB 3HP9A 4JRQA 3C6OB 3PQ2A 4EP9A 4E37A 1XVBE 3BVOA 3P9PA 4M3XA 4B7FA 1FZ5E 1MHYG 1DGHA 1MMOG 1XVEE 4QONA 1FZ8E 1XU5E 1U5UA 4ENTA 2IQFA 3LDBA 2LF6A 2YB5A 3RWUA 4KHNA 4CABA 3N1EA 1QWSA 3QETA 5GKNA 3NGIA 1FPOA 4AUEA 4FJXA 4EPHA 5H37A 4FK0A 3LD8A 3SQ1A 3SUQA 1DGGA 1N1CA 1MHZG 1GG9A 4QNDA 3SCXA 5IZ7A 3TAFA 3QNNA 3QERA 4QOLA 2MZWB 2JH8A 3P9SA 4E4BA 1F4JA 3RE8A 4AUMA 4M3YA 4HCBA 4ADOA 3SVIA 4IT5A 2VJ4A 2IUFA 2HD0A 3NDKA 4J2AA 3V7DB 1XVCE 4RG8A 3L8BA 2H4TA 3QEIA 4AKGA 3SQ4A 4FJGA 1XMHE 3EJ6A 1TGUA 1DGHB 4ENQA 1XVDE 1MTYG 4KI4A 3CFOA 8CATA 1TH2A 3J2PA 3TABA 4ENUA 2JHCA 1IH7A 2MMBA 4HCCA 1XMFE 1H7KA 3PQ3A 4KI6A 1FZ3E 4X5MA 4FJLA 4J2BA 3E4YA 4DTJA 3KD5E 4M3RA 4FJKA 1GGHA 4B7GA 3TTXA 1QWMA 3UO3A 1E93A 3TAEA
chains in the Genus database with same CATH topology
4M41A 1XVFE 3N1EA 3L1NA 3QNOA 3NAEA 4DTXA 4DTMA 3SPYA 3S9HA 3QETA 4DU1A 2B8IA 5GKNA 4B08A 2JHAA 3NGIA 4FJ9A 3LZJA 2P1QB 4DTUA 4FJXA 4EPHA 5H37A 3SPZA 4GAMC 4FK0A 3LD8A 4KHYA 3N1BA 1FZ9E 2OVRB 1CLQA 3CFPA 3SQ1A 3SUQA 3MKSB 1XMGE 2OZSA 4M45A 1DGGA 3QESA 1MHZG 2OYQA 1XVGE 4DU3A 3RGPA 4I6JB 2B7MA 3CQ8A 2JH9A 4QNDA 1FZ7E 3SCXA 3E4WA 2P5OA 5IZ7A 4DTNA 3TAFA 2P5GA 3QNNA 3QERA 1WAFA 2ATQA 2MZWB 2JH8A 3SUNA 3K2OA 4B7HA 4AKIA 4E4BA 3RGSA 1FXXA 2VJ5A 4KHUA 4BLCA 1FZ4E 4DTSA 1FZIE 1LDKE 2E31A 4FJHA 3WSOA 4M3ZA 1TH4A 1FZ6E 3RE8A 4M3YA 4DTRA 4HCBA 4ADOA 3TAGA 2VIXA 3SVIA 4AI6A 2VJ4A 3NWLA 4JS4A 4RL5A 2HD0A 3TJYA 3NDKA 4KHQA 2DY4A 4J2AA 4KHWA 1DGFA 3C94A 1FYZE 3SI6A 2DTUA 3RMCA 3HGLA 4DTOA 1DGBA 4FJ8A 4EYWA 1XL3C 3V7DB 3SUPA 1XVCE 4RG8A 3L8BA 1TH3A 3SQ2A 1WAJA 2H4TA 3QEIA 2OZMA 4AKGA 4RNGA 2E32A 4ADNA 3SQ4A 3C6NB 1FZ2E 2LF3A 3HGKE 4M3UA 3OGKB 4FJGA 4DTPA 3QEWA 2OVQB 1XMHE 3CFRA 4JRPA 3L0MA 3RMBA 4FJNA 3OGMB 3SUOA 3QEPA 1QQWA 2JPNA 3SNNA 1TGUA 3NCIA 3SQ0A 1NEXB 5IREA 3UIQA 2QXFA 3LZIA 1Q9XA 1FS1A 3NHGA 1DGHB 1XVDE 1MTYG 3L2OB 4M3WA 3SJJA 4M42A 4AKHA 1FZ0E 3QEXA 2B1EA 2P1OB 4J2DA 3HL8A 4KI4A 1FZHE 3KD1E 3NE6A 4DU4A 1Q9YA 3CFOA 5IBKB 8CATA 4FJMA 2JHPA 2DEBA 2FYOA 4X5NA 1TH2A 4FVMA 3RMAA 4FK4A 2P1MB 3J2PA 3QEVA 4KHSA 3TABA 3TAEA 3OGLB 4J2BA 3J27A 4FK2A 3C6PB 2P1PB 2JHCA 2RCUA 3C6OB 1IH7A 1FZ1E 3HP9A 4JRQA 4J2EA 2FW3A 4I9LA 4FJ7A 7CATA 2MMBA 2OVPB 4EP9A 4HCCA 1P22A 1XMFE 1XVBE 4FJJA 4E3SA 4FJIA 4KI6A 4M3XA 1XU3E 1FZ3E 1IG9A 3LDSA 4X5MA 4B7FA 1FZ5E 4FJLA 1MHYG 1DGHA 3E4YA 4DTJA 2PFTA 3KD5E 1MMOG 4M3RA 1XVEE 3RMDA 4FJ5A 4I9QA 4FJKA 3J7BA 2PFVA 4B7GA 1FZ8E 1XU5E 3C95A 4JS5A 3LDBA 2P1NB 4QNCA 2LF6A 4M3TA 2YB5A 3TL8B 3RWUA 4KHNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TH3 A;  1TH2 A;  4B7H A;  5GKN A;  3RGS A;  4BLC A;  7CAT A;  1TH4 A;  1QQW A;  3RE8 A;  1TGU A;  4B7F A;  1DGG A;  1DGH A;  3E4Y A;  1DGH B;  3NWL A;  3J7B A;  4B7G A;  3RGP A;  1DGF A;  3E4W A;  1DGB A;  8CAT A; 
#chains in the Genus database with same CATH topology
 4M41 A;  1XVF E;  3SPY A;  4DTM A;  1SY7 A;  3S9H A;  1H6N A;  4QOR A;  2P1Q B;  4DTU A;  4GAM C;  1NM0 A;  3TTU A;  1SI8 A;  4M45 A;  3RGP A;  2B7M A;  3E4W A;  4DTN A;  1GWH A;  2P5G A;  2ATQ A;  4QOM A;  2A9E A;  1FZ4 E;  4DTS A;  1FZI E;  1LDK E;  2E31 A;  4FJH A;  4M3Z A;  1TH4 A;  4ENW A;  4ENP A;  3NWL A;  3TJY A;  2DY4 A;  4ICG C;  2DTU A;  3HGL A;  1DGB A;  1XL3 C;  3SUP A;  1QF7 A;  1TH3 A;  4ENS A;  3SQ2 A;  2OZM A;  2E32 A;  4M3U A;  2LF3 A;  3HB6 A;  3OGK B;  2K5S A;  4DTP A;  4JRP A;  3L0M A;  4FJN A;  3SUO A;  2JPN A;  3SQ0 A;  1NEX B;  5IRE A;  3UIQ A;  2QXF A;  1Q9X A;  1FS1 A;  3NHG A;  4QOQ A;  4B40 A;  4QOP A;  1GGE A;  1FZH E;  3NE6 A;  4DU4 A;  2FYO A;  2ISA A;  4FK4 A;  4J2E A;  1P80 A;  4I9L A;  2MW2 A;  3PQ4 A;  4BFL A;  1XU3 E;  1IG9 A;  3LDS A;  2PFT A;  3RMD A;  4I9Q A;  1IPH A;  1GGJ A;  2PFV A;  3C95 A;  4QNC A;  3ZJ5 A;  3L1N A;  3QNO A;  3NAE A;  2B8I A;  4B08 A;  3LZJ A;  4B5K A;  3SPZ A;  1FZ9 E;  1CLQ A;  2OZS A;  2CAG A;  3UO2 A;  1XVG E;  1P7Y A;  3CQ8 A;  2P5O A;  3ZJ4 A;  4AUN A;  1WAF A;  4ENV A;  4B7H A;  1GGF A;  1M7S A;  3RGS A;  4KHU A;  4BLC A;  3WSO A;  1FZ6 E;  1GWE A;  3TTV A;  4DTR A;  3TAG A;  2VIX A;  3P9Q A;  4JS4 A;  4RL5 A;  4KHQ A;  4EYW A;  2CAH A;  1WAJ A;  1GGK A;  1GWF A;  3RMB A;  3SNN A;  4AUL A;  4QOO A;  3TTT A;  3LZI A;  3SJJ A;  1M85 A;  4AKH A;  4BIM A;  1FZ0 E;  3QEX A;  3KD1 E;  1Q9Y A;  4FJM A;  2JHP A;  2DEB A;  4X5N A;  4FVM A;  3RMA A;  2P1M B;  4KHS A;  1P7Z A;  4B2Y A;  2P1P B;  2RCU A;  4FJ7 A;  1FZ1 E;  7CAT A;  2FW3 A;  3DY5 A;  2OVP B;  1P22 A;  4FJJ A;  4E3S A;  4FJI A;  1HBZ A;  1CF9 A;  5BV2 P;  1P81 A;  4FJ5 A;  3J7B A;  4B7A A;  4JS5 A;  2P1N B;  1QWL A;  4M3T A;  3TL8 B;  4DTX A;  4DU1 A;  3PQ5 A;  2JHA A;  4FJ9 A;  4ENR A;  4B31 A;  4KHY A;  3N1B A;  3PQ7 A;  2OVR B;  2RKH A;  1A4E A;  3CFP A;  1MQF A;  3MKS B;  1XMG E;  3QES A;  2OYQ A;  4DU3 A;  4AJ9 A;  4I6J B;  4M42 A;  2JH9 A;  1FZ7 E;  3SUN A;  3K2O A;  4AKI A;  1FXX A;  2VJ5 A;  3PQ8 A;  3P9R A;  2J2M A;  3VU3 A;  4AI6 A;  2XQ1 A;  4KHW A;  1DGF A;  3C94 A;  1FYZ E;  3SI6 A;  2JQT A;  3RMC A;  4DTO A;  4FJ8 A;  1JW2 A;  4RNG A;  4ADN A;  3C6N B;  1FZ2 E;  3HGK E;  3QEW A;  2OVQ B;  3CFR A;  1QQW A;  3OGM B;  3QEP A;  3NCI A;  2XF2 A;  3TTW A;  3L2O B;  4M3W A;  2B1E A;  2P1O B;  4J2D A;  3HL8 A;  3PQ6 A;  5IBK B;  3QEV A;  3OGL B;  3J27 A;  4FK2 A;  3C6P B;  3HP9 A;  4JRQ A;  3C6O B;  3PQ2 A;  4EP9 A;  4E37 A;  1XVB E;  3BVO A;  3P9P A;  4M3X A;  4B7F A;  1FZ5 E;  1MHY G;  1DGH A;  1MMO G;  1XVE E;  4QON A;  1FZ8 E;  1XU5 E;  1U5U A;  4ENT A;  2IQF A;  3LDB A;  2LF6 A;  2YB5 A;  3RWU A;  4KHN A;  4CAB A;  3N1E A;  1QWS A;  3QET A;  5GKN A;  3NGI A;  1FPO A;  4AUE A;  4FJX A;  4EPH A;  5H37 A;  4FK0 A;  3LD8 A;  3SQ1 A;  3SUQ A;  1DGG A;  1N1C A;  1MHZ G;  1GG9 A;  4QND A;  3SCX A;  5IZ7 A;  3TAF A;  3QNN A;  3QER A;  4QOL A;  2MZW B;  2JH8 A;  3P9S A;  4E4B A;  1F4J A;  3RE8 A;  4AUM A;  4M3Y A;  4HCB A;  4ADO A;  3SVI A;  4IT5 A;  2VJ4 A;  2IUF A;  2HD0 A;  3NDK A;  4J2A A;  3V7D B;  1XVC E;  4RG8 A;  3L8B A;  2H4T A;  3QEI A;  4AKG A;  3SQ4 A;  4FJG A;  1XMH E;  3EJ6 A;  1TGU A;  1DGH B;  4ENQ A;  1XVD E;  1MTY G;  4KI4 A;  3CFO A;  8CAT A;  1TH2 A;  3J2P A;  3TAB A;  4ENU A;  2JHC A;  1IH7 A;  2MMB A;  4HCC A;  1XMF E;  1H7K A;  3PQ3 A;  4KI6 A;  1FZ3 E;  4X5M A;  4FJL A;  4J2B A;  3E4Y A;  4DTJ A;  3KD5 E;  4M3R A;  4FJK A;  1GGH A;  4B7G A;  3TTX A;  1QWM A;  3UO3 A;  1E93 A;  3TAE A; 
#chains in the Genus database with same CATH homology
 4M41 A;  1XVF E;  3N1E A;  3L1N A;  3QNO A;  3NAE A;  4DTX A;  4DTM A;  3SPY A;  3S9H A;  3QET A;  4DU1 A;  2B8I A;  5GKN A;  4B08 A;  2JHA A;  3NGI A;  4FJ9 A;  3LZJ A;  2P1Q B;  4DTU A;  4FJX A;  4EPH A;  5H37 A;  3SPZ A;  4GAM C;  4FK0 A;  3LD8 A;  4KHY A;  3N1B A;  1FZ9 E;  2OVR B;  1CLQ A;  3CFP A;  3SQ1 A;  3SUQ A;  3MKS B;  1XMG E;  2OZS A;  4M45 A;  1DGG A;  3QES A;  1MHZ G;  2OYQ A;  1XVG E;  4DU3 A;  3RGP A;  4I6J B;  2B7M A;  3CQ8 A;  2JH9 A;  4QND A;  1FZ7 E;  3SCX A;  3E4W A;  2P5O A;  5IZ7 A;  4DTN A;  3TAF A;  2P5G A;  3QNN A;  3QER A;  1WAF A;  2ATQ A;  2MZW B;  2JH8 A;  3SUN A;  3K2O A;  4B7H A;  4AKI A;  4E4B A;  3RGS A;  1FXX A;  2VJ5 A;  4KHU A;  4BLC A;  1FZ4 E;  4DTS A;  1FZI E;  1LDK E;  2E31 A;  4FJH A;  3WSO A;  4M3Z A;  1TH4 A;  1FZ6 E;  3RE8 A;  4M3Y A;  4DTR A;  4HCB A;  4ADO A;  3TAG A;  2VIX A;  3SVI A;  4AI6 A;  2VJ4 A;  3NWL A;  4JS4 A;  4RL5 A;  2HD0 A;  3TJY A;  3NDK A;  4KHQ A;  2DY4 A;  4J2A A;  4KHW A;  1DGF A;  3C94 A;  1FYZ E;  3SI6 A;  2DTU A;  3RMC A;  3HGL A;  4DTO A;  1DGB A;  4FJ8 A;  4EYW A;  1XL3 C;  3V7D B;  3SUP A;  1XVC E;  4RG8 A;  3L8B A;  1TH3 A;  3SQ2 A;  1WAJ A;  2H4T A;  3QEI A;  2OZM A;  4AKG A;  4RNG A;  2E32 A;  4ADN A;  3SQ4 A;  3C6N B;  1FZ2 E;  2LF3 A;  3HGK E;  4M3U A;  3OGK B;  4FJG A;  4DTP A;  3QEW A;  2OVQ B;  1XMH E;  3CFR A;  4JRP A;  3L0M A;  3RMB A;  4FJN A;  3OGM B;  3SUO A;  3QEP A;  1QQW A;  2JPN A;  3SNN A;  1TGU A;  3NCI A;  3SQ0 A;  1NEX B;  5IRE A;  3UIQ A;  2QXF A;  3LZI A;  1Q9X A;  1FS1 A;  3NHG A;  1DGH B;  1XVD E;  1MTY G;  3L2O B;  4M3W A;  3SJJ A;  4M42 A;  4AKH A;  1FZ0 E;  3QEX A;  2B1E A;  2P1O B;  4J2D A;  3HL8 A;  4KI4 A;  1FZH E;  3KD1 E;  3NE6 A;  4DU4 A;  1Q9Y A;  3CFO A;  5IBK B;  8CAT A;  4FJM A;  2JHP A;  2DEB A;  2FYO A;  4X5N A;  1TH2 A;  4FVM A;  3RMA A;  4FK4 A;  2P1M B;  3J2P A;  3QEV A;  4KHS A;  3TAB A;  3TAE A;  3OGL B;  4J2B A;  3J27 A;  4FK2 A;  3C6P B;  2P1P B;  2JHC A;  2RCU A;  3C6O B;  1IH7 A;  1FZ1 E;  3HP9 A;  4JRQ A;  4J2E A;  2FW3 A;  4I9L A;  4FJ7 A;  7CAT A;  2MMB A;  2OVP B;  4EP9 A;  4HCC A;  1P22 A;  1XMF E;  1XVB E;  4FJJ A;  4E3S A;  4FJI A;  4KI6 A;  4M3X A;  1XU3 E;  1FZ3 E;  1IG9 A;  3LDS A;  4X5M A;  4B7F A;  1FZ5 E;  4FJL A;  1MHY G;  1DGH A;  3E4Y A;  4DTJ A;  2PFT A;  3KD5 E;  1MMO G;  4M3R A;  1XVE E;  3RMD A;  4FJ5 A;  4I9Q A;  4FJK A;  3J7B A;  2PFV A;  4B7G A;  1FZ8 E;  1XU5 E;  3C95 A;  4JS5 A;  3LDB A;  2P1N B;  4QNC A;  2LF6 A;  4M3T A;  2YB5 A;  3TL8 B;  3RWU A;  4KHN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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