3E4YA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. i2(1)2(1)2(1) crystal form
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
301
structure length
301
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein
publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
source organism Mycobacterium avium subsp. paratuberculosis
molecule tags Oxidoreductase
total genus 86
structure length 301
sequence length 301
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4yA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4yA02
5GKNA 4B7HA 1DGHA 1TGUA 4B7GA 4BLCA 1TH3A 1DGFA 3RE8A 3J7BA 1DGHB 3E4YA 3NWLA 3RGSA 1DGGA 8CATA 1TH2A 1TH4A 3E4WA 1DGBA 1QQWA 3RGPA 4B7FA 7CATA
chains in the Genus database with same CATH superfamily
3QERA 4FK0A 3TABA 1XMFE 4M3TA 3N1EA 4QOQA 3QEIA 4FJKA 4ENPA 1MMOG 3LDBA 4AKHA 2HD0A 2E31A 3SQ2A 1XVGE 1QQWA 2OVQB 4EYWA 1GWHA 3HP9A 4FJXA 2OZSA 2QXFA 3MKSB 1XMGE 2XQ1A 4FJNA 1HBZA 4JS4A 1GG9A 3RMAA 3OGKB 4HCBA 4J2DA 3QEXA 3J7BA 1DGHB 4RL5A 1TH2A 2P1PB 4EP9A 3SUPA 3L1NA 4DTNA 2LF6A 4RNGA 1GGHA 3ZJ5A 1FZIE 3PQ3A 4HCCA 4BIMA 3RMDA 2P5OA 1XVFE 3TTTA 1Q9YA 2ISAA 1GGEA 1A4EA 4M3WA 2OVRB 4I9QA 2P1MB 4FK4A 4AUNA 1FPOA 1P7ZA 3BVOA 3RMCA 2B8IA 3HB6A 5GKNA 4KI4A 4B7AA 3QEPA 4DTOA 3L0MA 1GWFA 2A9EA 1P81A 3LZJA 1SI8A 3SQ0A 3QETA 2JPNA 2B7MA 4AUEA 3NHGA 4DTUA 3TAFA 4E37A 2JHPA 5IZ7A 1FZ1E 4B7FA 4CABA 4AUMA 3TTUA 3VU3A 3C95A 1TGUA 2RKHA 1IPHA 2RCUA 4M3ZA 1QWLA 4EPHA 3PQ5A 1FS1A 2PFVA 2MW2A 4ENVA 2MZWB 3CQ8A 3KD5E 3UIQA 4ENTA 3J2PA 2H4TA 2B1EA 3PQ8A 3SUQA 4QOMA 4X5NA 2JH9A 1FZ7E 4RG8A 4ENUA 1MHYG 3RMBA 3SPZA 1FZ2E 1CF9A 3SNNA 3P9PA 3PQ4A 3C6PB 1XL3C 2YB5A 3LD8A 3OGLB 4B40A 2VJ4A 4KHSA 1DGBA 2JH8A 3SUOA 3TTWA 3TAEA 2IUFA 4FJGA 3TTXA 3WSOA 4QORA 4KHNA 1MTYG 4DU4A 4B08A 1FZ8E 4QNDA 1NM0A 4DTJA 3RGPA 3QNOA 1FZ4E 3PQ7A 4ENWA 1IH7A 1P22A 3SVIA 2CAGA 1H7KA 3K2OA 4FJ5A 5IBKB 2FW3A 2OVPB 4M45A 4QONA 2E32A 3C94A 1E93A 4X5MA 3TL8B 4IT5A 3SCXA 1NEXB 1DGHA 4FVMA 3EJ6A 1FXXA 4DTPA 1IG9A 2VJ5A 7CATA 3SQ4A 3QNNA 4FJLA 3ZJ4A 1QF7A 3PQ6A 3QEWA 1FYZE 4M3XA 3UO2A 3S9HA 1QWMA 1XVDE 3NCIA 1U5UA 4J2BA 1FZ6E 3SPYA 1WAFA 1TH3A 4DTMA 3SUNA 4B31A 1FZ3E 3L8BA 4JS5A 1GGKA 3CFOA 4FK2A 1DGGA 1FZ5E 3NE6A 3OGMB 1TH4A 4FJ8A 4B5KA 3L2OB 3SQ1A 3QEVA 1P7YA 3SJJA 4E4BA 3NDKA 4DTSA 2P1QB 1F4JA 1M7SA 2IQFA 4FJHA 4ADNA 3RWUA 2PFTA 4KI6A 4B2YA 1DGFA 3CFPA 3RE8A 2DTUA 3RGSA 3NGIA 4JRPA 2K5SA 1XMHE 2JQTA 1XU3E 4KHYA 3KD1E 4FJJA 1GGFA 4KHUA 3C6OB 1H6NA 1XVBE 3UO3A 1FZ9E 4B7HA 3HGKE 1XU5E 4I6JB 3LZIA 4FJMA 1P80A 3HGLA 4M3RA 3NWLA 3N1BA 8CATA 4DTRA 4AI6A 2P1OB 4QOPA 4ENSA 1N1CA 3SI6A 4ENQA 2LF3A 4ICGC 2JHCA 4BFLA 3DY5A 2FYOA 2P1NB 3P9RA 2OYQA 1CLQA 2JHAA 4J2AA 1LDKE 3P9SA 3E4YA 4AULA 1XVCE 2P5GA 3PQ2A 3E4WA 4KHWA 1MQFA 1GGJA 4M3YA 5IREA 1FZ0E 4ENRA 1XVEE 4BLCA 2XF2A 4ADOA 3TTVA 4QOLA 4QNCA 2OZMA 4E3SA 1GWEA 4DU3A 1WAJA 5BV2P 1JW2A 2ATQA 4AJ9A 2DEBA 3TJYA 4M3UA 4QOOA 4M42A 3CFRA 1MHZG 4M41A 4JRQA 2VIXA 1M85A 1Q9XA 2DY4A 5H37A 2MMBA 3P9QA 3QESA 2J2MA 1SY7A 4DTXA 4AKIA 3J27A 4FJIA 4B7GA 3HL8A 4AKGA 3C6NB 4J2EA 4I9LA 4FJ9A 3V7DB 4KHQA 1QWSA 1FZHE 3LDSA 4GAMC 3TAGA 2CAHA 3NAEA 4FJ7A 4DU1A
chains in the Genus database with same CATH topology
3QERA 4FK0A 2FYOA 2P1NB 1DGHA 3C95A 4FVMA 1TGUA 3TABA 1XMFE 2RCUA 2OYQA 4M3ZA 1CLQA 4EPHA 1FXXA 2JHAA 4DTPA 4J2AA 4M3TA 1IG9A 2VJ5A 1LDKE 1FS1A 2PFVA 3N1EA 7CATA 3E4YA 3SQ4A 3QEIA 4FJKA 3QNNA 4FJLA 1MMOG 3LDBA 2MZWB 1FYZE 3CQ8A 1XVCE 3QEWA 3KD5E 3UIQA 4M3XA 4AKHA 3S9HA 2P5GA 3E4WA 2HD0A 1XVDE 2E31A 3SQ2A 3NCIA 3J2PA 1XVGE 4KHWA 1QQWA 2OVQB 4EYWA 2H4TA 4B7FA 2B1EA 3HP9A 4M3YA 5IREA 1FZ0E 3SUQA 4X5NA 1XVEE 4FJXA 2JH9A 2OZSA 1FZ7E 2QXFA 4RG8A 4J2BA 1FZ6E 1XMGE 3MKSB 3SPYA 4BLCA 4FJNA 1MHYG 1WAFA 4JS4A 1TH3A 3RMAA 4ADOA 3OGKB 3RMBA 4DTMA 4HCBA 3SUNA 4QNCA 3SPZA 1FZ2E 4J2DA 1FZ3E 3L8BA 4JS5A 4E3SA 3QEXA 3SNNA 3CFOA 2OZMA 4FK2A 1DGHB 1DGGA 3C6PB 4RL5A 1XL3C 4DU3A 1FZ5E 1TH2A 2P1PB 3NE6A 4EP9A 3SUPA 3OGMB 2YB5A 3L1NA 4DTNA 2LF6A 1WAJA 4RNGA 1TH4A 3LD8A 3OGLB 4FJ8A 2VJ4A 4KHSA 3L2OB 3SQ1A 1FZIE 2JH8A 1DGBA 3QEVA 3SUOA 4HCCA 3RMDA 3SJJA 3TAEA 2ATQA 2P5OA 3J7BA 1XVFE 4E4BA 1Q9YA 3NDKA 4DTSA 4FJGA 2DEBA 2P1QB 3TJYA 4M3UA 3WSOA 4FJHA 4ADNA 3RWUA 4M42A 2PFTA 4KI6A 4M3WA 4FJ7A 3CFPA 1DGFA 3CFRA 3RE8A 1MHZG 4KHNA 2DTUA 2OVRB 4I9QA 3RGSA 1FZ1E 4M41A 3NGIA 4JRQA 1MTYG 4JRPA 4DU4A 3SCXA 2VIXA 4B08A 1XMHE 2P1MB 4FK4A 1XU3E 4KHYA 1Q9XA 3KD1E 2DY4A 5H37A 1FZ8E 2MMBA 4FJJA 4QNDA 4KHUA 3C6OB 3RMCA 2B8IA 1XVBE 4DTJA 3RGPA 3QNOA 3QESA 1FZ4E 1FZ9E 4KI4A 5GKNA 4B7HA 1IH7A 1P22A 3SVIA 4DTXA 3J27A 4FJIA 4AKIA 3QEPA 3HGKE 4DTOA 4B7GA 3HL8A 1XU5E 4I6JB 3L0MA 3LZIA 4FJMA 4AKGA 3C6NB 4J2EA 3HGLA 3K2OA 4I9LA 4M3RA 3LZJA 3N1BA 4FJ5A 4FJ9A 5IBKB 3NWLA 8CATA 3V7DB 3QETA 3SQ0A 4KHQA 1FZHE 3LDSA 4DTRA 2JPNA 2FW3A 2OVPB 2B7MA 4GAMC 4M45A 2P1OB 4AI6A 2E32A 3C94A 4X5MA 3NHGA 4DTUA 3TL8B 3TAGA 3TAFA 3SI6A 2JHPA 2LF3A 5IZ7A 3NAEA 2JHCA 1NEXB 4DU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GKN A;  4B7H A;  1DGH A;  1TGU A;  4B7G A;  4BLC A;  1TH3 A;  1DGF A;  3RE8 A;  3J7B A;  1DGH B;  3E4Y A;  3NWL A;  3RGS A;  1DGG A;  8CAT A;  1TH2 A;  1TH4 A;  3E4W A;  1DGB A;  1QQW A;  3RGP A;  4B7F A;  7CAT A; 
#chains in the Genus database with same CATH topology
 3QER A;  4FK0 A;  3TAB A;  1XMF E;  4M3T A;  3N1E A;  4QOQ A;  3QEI A;  4FJK A;  4ENP A;  1MMO G;  3LDB A;  4AKH A;  2HD0 A;  2E31 A;  3SQ2 A;  1XVG E;  1QQW A;  2OVQ B;  4EYW A;  1GWH A;  3HP9 A;  4FJX A;  2OZS A;  2QXF A;  3MKS B;  1XMG E;  2XQ1 A;  4FJN A;  1HBZ A;  4JS4 A;  1GG9 A;  3RMA A;  3OGK B;  4HCB A;  4J2D A;  3QEX A;  3J7B A;  1DGH B;  4RL5 A;  1TH2 A;  2P1P B;  4EP9 A;  3SUP A;  3L1N A;  4DTN A;  2LF6 A;  4RNG A;  1GGH A;  3ZJ5 A;  1FZI E;  3PQ3 A;  4HCC A;  4BIM A;  3RMD A;  2P5O A;  1XVF E;  3TTT A;  1Q9Y A;  2ISA A;  1GGE A;  1A4E A;  4M3W A;  2OVR B;  4I9Q A;  2P1M B;  4FK4 A;  4AUN A;  1FPO A;  1P7Z A;  3BVO A;  3RMC A;  2B8I A;  3HB6 A;  5GKN A;  4KI4 A;  4B7A A;  3QEP A;  4DTO A;  3L0M A;  1GWF A;  2A9E A;  1P81 A;  3LZJ A;  1SI8 A;  3SQ0 A;  3QET A;  2JPN A;  2B7M A;  4AUE A;  3NHG A;  4DTU A;  3TAF A;  4E37 A;  2JHP A;  5IZ7 A;  1FZ1 E;  4B7F A;  4CAB A;  4AUM A;  3TTU A;  3VU3 A;  3C95 A;  1TGU A;  2RKH A;  1IPH A;  2RCU A;  4M3Z A;  1QWL A;  4EPH A;  3PQ5 A;  1FS1 A;  2PFV A;  2MW2 A;  4ENV A;  2MZW B;  3CQ8 A;  3KD5 E;  3UIQ A;  4ENT A;  3J2P A;  2H4T A;  2B1E A;  3PQ8 A;  3SUQ A;  4QOM A;  4X5N A;  2JH9 A;  1FZ7 E;  4RG8 A;  4ENU A;  1MHY G;  3RMB A;  3SPZ A;  1FZ2 E;  1CF9 A;  3SNN A;  3P9P A;  3PQ4 A;  3C6P B;  1XL3 C;  2YB5 A;  3LD8 A;  3OGL B;  4B40 A;  2VJ4 A;  4KHS A;  1DGB A;  2JH8 A;  3SUO A;  3TTW A;  3TAE A;  2IUF A;  4FJG A;  3TTX A;  3WSO A;  4QOR A;  4KHN A;  1MTY G;  4DU4 A;  4B08 A;  1FZ8 E;  4QND A;  1NM0 A;  4DTJ A;  3RGP A;  3QNO A;  1FZ4 E;  3PQ7 A;  4ENW A;  1IH7 A;  1P22 A;  3SVI A;  2CAG A;  1H7K A;  3K2O A;  4FJ5 A;  5IBK B;  2FW3 A;  2OVP B;  4M45 A;  4QON A;  2E32 A;  3C94 A;  1E93 A;  4X5M A;  3TL8 B;  4IT5 A;  3SCX A;  1NEX B;  1DGH A;  4FVM A;  3EJ6 A;  1FXX A;  4DTP A;  1IG9 A;  2VJ5 A;  7CAT A;  3SQ4 A;  3QNN A;  4FJL A;  3ZJ4 A;  1QF7 A;  3PQ6 A;  3QEW A;  1FYZ E;  4M3X A;  3UO2 A;  3S9H A;  1QWM A;  1XVD E;  3NCI A;  1U5U A;  4J2B A;  1FZ6 E;  3SPY A;  1WAF A;  1TH3 A;  4DTM A;  3SUN A;  4B31 A;  1FZ3 E;  3L8B A;  4JS5 A;  1GGK A;  3CFO A;  4FK2 A;  1DGG A;  1FZ5 E;  3NE6 A;  3OGM B;  1TH4 A;  4FJ8 A;  4B5K A;  3L2O B;  3SQ1 A;  3QEV A;  1P7Y A;  3SJJ A;  4E4B A;  3NDK A;  4DTS A;  2P1Q B;  1F4J A;  1M7S A;  2IQF A;  4FJH A;  4ADN A;  3RWU A;  2PFT A;  4KI6 A;  4B2Y A;  1DGF A;  3CFP A;  3RE8 A;  2DTU A;  3RGS A;  3NGI A;  4JRP A;  2K5S A;  1XMH E;  2JQT A;  1XU3 E;  4KHY A;  3KD1 E;  4FJJ A;  1GGF A;  4KHU A;  3C6O B;  1H6N A;  1XVB E;  3UO3 A;  1FZ9 E;  4B7H A;  3HGK E;  1XU5 E;  4I6J B;  3LZI A;  4FJM A;  1P80 A;  3HGL A;  4M3R A;  3NWL A;  3N1B A;  8CAT A;  4DTR A;  4AI6 A;  2P1O B;  4QOP A;  4ENS A;  1N1C A;  3SI6 A;  4ENQ A;  2LF3 A;  4ICG C;  2JHC A;  4BFL A;  3DY5 A;  2FYO A;  2P1N B;  3P9R A;  2OYQ A;  1CLQ A;  2JHA A;  4J2A A;  1LDK E;  3P9S A;  3E4Y A;  4AUL A;  1XVC E;  2P5G A;  3PQ2 A;  3E4W A;  4KHW A;  1MQF A;  1GGJ A;  4M3Y A;  5IRE A;  1FZ0 E;  4ENR A;  1XVE E;  4BLC A;  2XF2 A;  4ADO A;  3TTV A;  4QOL A;  4QNC A;  2OZM A;  4E3S A;  1GWE A;  4DU3 A;  1WAJ A;  5BV2 P;  1JW2 A;  2ATQ A;  4AJ9 A;  2DEB A;  3TJY A;  4M3U A;  4QOO A;  4M42 A;  3CFR A;  1MHZ G;  4M41 A;  4JRQ A;  2VIX A;  1M85 A;  1Q9X A;  2DY4 A;  5H37 A;  2MMB A;  3P9Q A;  3QES A;  2J2M A;  1SY7 A;  4DTX A;  4AKI A;  3J27 A;  4FJI A;  4B7G A;  3HL8 A;  4AKG A;  3C6N B;  4J2E A;  4I9L A;  4FJ9 A;  3V7D B;  4KHQ A;  1QWS A;  1FZH E;  3LDS A;  4GAM C;  3TAG A;  2CAH A;  3NAE A;  4FJ7 A;  4DU1 A; 
#chains in the Genus database with same CATH homology
 3QER A;  4FK0 A;  2FYO A;  2P1N B;  1DGH A;  3C95 A;  4FVM A;  1TGU A;  3TAB A;  1XMF E;  2RCU A;  2OYQ A;  4M3Z A;  1CLQ A;  4EPH A;  1FXX A;  2JHA A;  4DTP A;  4J2A A;  4M3T A;  1IG9 A;  2VJ5 A;  1LDK E;  1FS1 A;  2PFV A;  3N1E A;  7CAT A;  3E4Y A;  3SQ4 A;  3QEI A;  4FJK A;  3QNN A;  4FJL A;  1MMO G;  3LDB A;  2MZW B;  1FYZ E;  3CQ8 A;  1XVC E;  3QEW A;  3KD5 E;  3UIQ A;  4M3X A;  4AKH A;  3S9H A;  2P5G A;  3E4W A;  2HD0 A;  1XVD E;  2E31 A;  3SQ2 A;  3NCI A;  3J2P A;  1XVG E;  4KHW A;  1QQW A;  2OVQ B;  4EYW A;  2H4T A;  4B7F A;  2B1E A;  3HP9 A;  4M3Y A;  5IRE A;  1FZ0 E;  3SUQ A;  4X5N A;  1XVE E;  4FJX A;  2JH9 A;  2OZS A;  1FZ7 E;  2QXF A;  4RG8 A;  4J2B A;  1FZ6 E;  1XMG E;  3MKS B;  3SPY A;  4BLC A;  4FJN A;  1MHY G;  1WAF A;  4JS4 A;  1TH3 A;  3RMA A;  4ADO A;  3OGK B;  3RMB A;  4DTM A;  4HCB A;  3SUN A;  4QNC A;  3SPZ A;  1FZ2 E;  4J2D A;  1FZ3 E;  3L8B A;  4JS5 A;  4E3S A;  3QEX A;  3SNN A;  3CFO A;  2OZM A;  4FK2 A;  1DGH B;  1DGG A;  3C6P B;  4RL5 A;  1XL3 C;  4DU3 A;  1FZ5 E;  1TH2 A;  2P1P B;  3NE6 A;  4EP9 A;  3SUP A;  3OGM B;  2YB5 A;  3L1N A;  4DTN A;  2LF6 A;  1WAJ A;  4RNG A;  1TH4 A;  3LD8 A;  3OGL B;  4FJ8 A;  2VJ4 A;  4KHS A;  3L2O B;  3SQ1 A;  1FZI E;  2JH8 A;  1DGB A;  3QEV A;  3SUO A;  4HCC A;  3RMD A;  3SJJ A;  3TAE A;  2ATQ A;  2P5O A;  3J7B A;  1XVF E;  4E4B A;  1Q9Y A;  3NDK A;  4DTS A;  4FJG A;  2DEB A;  2P1Q B;  3TJY A;  4M3U A;  3WSO A;  4FJH A;  4ADN A;  3RWU A;  4M42 A;  2PFT A;  4KI6 A;  4M3W A;  4FJ7 A;  3CFP A;  1DGF A;  3CFR A;  3RE8 A;  1MHZ G;  4KHN A;  2DTU A;  2OVR B;  4I9Q A;  3RGS A;  1FZ1 E;  4M41 A;  3NGI A;  4JRQ A;  1MTY G;  4JRP A;  4DU4 A;  3SCX A;  2VIX A;  4B08 A;  1XMH E;  2P1M B;  4FK4 A;  1XU3 E;  4KHY A;  1Q9X A;  3KD1 E;  2DY4 A;  5H37 A;  1FZ8 E;  2MMB A;  4FJJ A;  4QND A;  4KHU A;  3C6O B;  3RMC A;  2B8I A;  1XVB E;  4DTJ A;  3RGP A;  3QNO A;  3QES A;  1FZ4 E;  1FZ9 E;  4KI4 A;  5GKN A;  4B7H A;  1IH7 A;  1P22 A;  3SVI A;  4DTX A;  3J27 A;  4FJI A;  4AKI A;  3QEP A;  3HGK E;  4DTO A;  4B7G A;  3HL8 A;  1XU5 E;  4I6J B;  3L0M A;  3LZI A;  4FJM A;  4AKG A;  3C6N B;  4J2E A;  3HGL A;  3K2O A;  4I9L A;  4M3R A;  3LZJ A;  3N1B A;  4FJ5 A;  4FJ9 A;  5IBK B;  3NWL A;  8CAT A;  3V7D B;  3QET A;  3SQ0 A;  4KHQ A;  1FZH E;  3LDS A;  4DTR A;  2JPN A;  2FW3 A;  2OVP B;  2B7M A;  4GAM C;  4M45 A;  2P1O B;  4AI6 A;  2E32 A;  3C94 A;  4X5M A;  3NHG A;  4DTU A;  3TL8 B;  3TAG A;  3TAF A;  3SI6 A;  2JHP A;  2LF3 A;  5IZ7 A;  3NAE A;  2JHC A;  1NEX B;  4DU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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