3E4YA

Crystal structure of a 33kda catalase-related protein from mycobacterium avium subsp. paratuberculosis. i2(1)2(1)2(1) crystal form
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
301
structure length
301
Chain Sequence
GLTPDQAIDAIRGTGGAQPGCRALHAKGTLYRGTFTATRDAVMLSAAPHLDGSTVPALIRFSNGSGNPKQRDGAPGVRGMAVKFTLPDGSTTDVSAQTARLLVSSTPEGFIDLLKAMRPGLTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGPVRFDFRVQIAGPTDSTVDPSSAWQSTQIVTVGTVTITGPDTEREHGGDIVVFDPMRVTDGIEPSDDPVLRFRTLVYSASVKLRTGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure and peroxidase activity of a 33-kDa catalase-related protein from Mycobacterium avium ssp. paratuberculosis.
pubmed doi rcsb
source organism Mycobacterium avium subsp. paratuberculosis
molecule tags Oxidoreductase
molecule keywords Putative uncharacterized protein
total genus 86
structure length 301
sequence length 301
ec nomenclature
pdb deposition date 2008-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.120 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3e4yA01
2.40.180.20 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase HpII, Chain A, domain 1 3e4yA02
1QQWA 4B7HA 1DGGA 4B7FA 1DGHA 5GKNA 4BLCA 4B7GA 3E4YA 3RGSA 1DGBA 3J7BA 3E4WA 1TH4A 1TH3A 3RE8A 3RGPA 3NWLA 1TGUA 1TH2A 1DGHB 8CATA 7CATA 1DGFA
chains in the Genus database with same CATH superfamily
3C95A 4DU3A 1XVEE 1WAFA 4ENPA 3TL8B 4ADNA 4M3XA 2VJ5A 1FZ6E 2B7MA 1FZHE 1TH4A 1XMFE 4QOMA 3SUQA 4FJXA 2E31A 1Q9XA 4HCCA 3SCXA 3NDKA 2OVPB 4X5NA 3WSOA 1XVFE 5BV2P 4DTSA 2FW3A 4DTOA 4FJ5A 4M3YA 2JPNA 1MHZG 3HL8A 1WAJA 4HCBA 4J2BA 3N1BA 3L2OB 3K2OA 2A9EA 3L1NA 2OZMA 4JRPA 4DU1A 2E32A 3SUPA 3CFOA 4B7FA 2P1NB 3UO2A 3LDSA 1P7YA 2DY4A 3TAFA 1P22A 4M3ZA 3C6PB 1GGEA 3NE6A 4DTXA 2PFTA 3NWLA 2H4TA 3CFRA 3SJJA 4ENQA 4FJ7A 1DGHB 2IUFA 4I6JB 1FZ9E 4DTMA 1H7KA 2OVRB 2HD0A 3SQ1A 4DTUA 4RNGA 5GKNA 3NCIA 4ICGC 3SVIA 3QEPA 4FJJA 4ENRA 3E4YA 4QOQA 3C6OB 3J7BA 4J2AA 1P7ZA 3EJ6A 4JS5A 1IG9A 5IZ7A 2OVQB 1XVGE 4RL5A 2OZSA 4FJNA 3S9HA 3L0MA 2MZWB 3P9SA 3QNOA 2RKHA 3QEIA 3PQ2A 3QESA 3UO3A 4AKIA 2CAHA 3SI6A 5H37A 3RGPA 4EPHA 4DU4A 4IT5A 1XU5E 1XMGE 3ZJ4A 3RWUA 3LZJA 2VJ4A 5IBKB 4B7HA 4M3RA 1FZ2E 3LZIA 4B7GA 4DTPA 3OGMB 3N1EA 4FJGA 1TH2A 3QEVA 1A4EA 4JS4A 4KHSA 2JHPA 3TTUA 4QOLA 3OGLB 7CATA 2DTUA 2P5GA 1DGFA 4QOPA 4B40A 2P1OB 4AKHA 3RMDA 4B7AA 1XU3E 1U5UA 1DGHA 2JH9A 3HB6A 4X5MA 1FZ1E 3LD8A 2OYQA 2RCUA 3QEXA 2PFVA 3P9RA 2LF3A 1TGUA 1NM0A 3TTWA 4M3TA 3MKSB 2FYOA 1GGKA 4FJIA 1GGFA 4FJHA 2B8IA 1IPHA 4AKGA 4M3WA 4DTRA 3QETA 1P81A 4KHNA 3TJYA 1GGHA 4B2YA 1XL3C 2JHCA 4I9QA 2JQTA 3NHGA 4M41A 3SPYA 4EYWA 4ENSA 2ISAA 3QNNA 4E3SA 3C94A 3CFPA 1E93A 4AULA 2JH8A 1IH7A 3J2PA 1FXXA 3TAGA 3J27A 1M85A 4E37A 4ENUA 1H6NA 1F4JA 1FZ7E 2P1PB 8CATA 2MW2A 1GWEA 3VU3A 3OGKB 4BIMA 1FZIE 4AUNA 1Q9YA 4KHQA 2IQFA 3C6NB 3V7DB 4BFLA 4AI6A 3LDBA 4FJ8A 1GG9A 2ATQA 4JRQA 3P9QA 1GGJA 4DTJA 4RG8A 3QERA 4B08A 4FJMA 1QWMA 4ENTA 4ENVA 3P9PA 3DY5A 3TTVA 1M7SA 1QWSA 4B5KA 2J2MA 1DGGA 4ENWA 1FS1A 3QEWA 1FZ0E 1FPOA 3RMBA 4ADOA 3L8BA 3TTXA 2CAGA 1FZ8E 4J2EA 3E4WA 1SY7A 4QORA 4M45A 4KHWA 2JHAA 4B31A 1XVCE 1CLQA 4AUEA 1NEXB 2XQ1A 3NAEA 2K5SA 1QQWA 3TAEA 2XF2A 1XMHE 4FJ9A 3NGIA 3TABA 1XVBE 3RE8A 2P1QB 4GAMC 2LF6A 1FZ5E 3SUOA 3PQ3A 1N1CA 3SQ0A 4FJLA 4I9LA 3HGLA 1MTYG 2P1MB 3PQ4A 1GWFA 2QXFA 4KHYA 3SUNA 3TTTA 1FZ4E 1MQFA 4QNDA 4QNCA 1LDKE 3HGKE 4FK4A 4KI6A 3RMCA 1GWHA 2VIXA 2B1EA 4EP9A 1MMOG 2YB5A 4KHUA 4AJ9A 4FK2A 4M42A 4E4BA 3SQ2A 3BVOA 4M3UA 3HP9A 1SI8A 4FJKA 4J2DA 3PQ5A 3PQ8A 4QOOA 4AUMA 4BLCA 4FVMA 3SQ4A 3SPZA 1QWLA 3CQ8A 1DGBA 3RMAA 4QONA 1JW2A 4DTNA 3PQ6A 1FZ3E 1MHYG 3UIQA 2MMBA 1XVDE 1P80A 4KI4A 2P5OA 4CABA 3KD5E 4FK0A 5IREA 3PQ7A 3RGSA 1HBZA 1TH3A 1CF9A 2DEBA 1QF7A 3SNNA 3KD1E 1FYZE 3ZJ5A
chains in the Genus database with same CATH topology
3HGLA 3CFPA 3C95A 4DU3A 1MTYG 1XVEE 3QNOA 1WAFA 2JH8A 3TL8B 4ADNA 2P1MB 1IH7A 3QEIA 3J2PA 4M3XA 3QESA 1FXXA 3TAGA 2VJ5A 3J27A 1FZ6E 2B7MA 2QXFA 4AKIA 1FZHE 4KHYA 1TH4A 1XMFE 3SI6A 5H37A 1FZ7E 4EPHA 3SUNA 3RGPA 4DU4A 1FZ4E 3SUQA 4FJXA 1XU5E 4QNDA 2E31A 1XMGE 4QNCA 1Q9XA 1LDKE 3RWUA 4HCCA 3HGKE 4FK4A 3SCXA 3NDKA 2P1PB 8CATA 2OVPB 4X5NA 4KI6A 3RMCA 3LZJA 2VJ4A 3OGKB 3WSOA 5IBKB 4B7HA 1FZIE 1XVFE 4M3RA 4DTSA 1Q9YA 4KHQA 2FW3A 3C6NB 4DTOA 4FJ5A 2VIXA 2JPNA 3V7DB 4M3YA 2B1EA 4AI6A 4EP9A 1MHZG 3HL8A 1MMOG 3LDBA 2YB5A 1FZ2E 4KHUA 4FJ8A 1WAJA 3LZIA 4B7GA 4HCBA 2ATQA 4DTPA 4J2BA 4JRQA 3N1BA 4FK2A 4M42A 4DTJA 3L2OB 4E4BA 4RG8A 3K2OA 3SQ2A 3OGMB 3QERA 4B08A 3N1EA 4FJGA 4FJMA 4M3UA 3QEVA 1TH2A 3HP9A 4JS4A 4KHSA 2JHPA 4FJKA 4J2DA 3L1NA 2OZMA 3OGLB 7CATA 2DTUA 4JRPA 4DU1A 2P5GA 1DGFA 2P1OB 4AKHA 2E32A 3RMDA 3SUPA 1XU3E 3CFOA 1DGGA 1FS1A 3QEWA 1FZ0E 2P1NB 3RMBA 4ADOA 1DGHA 4B7FA 2JH9A 4BLCA 3L8BA 3LDSA 4FVMA 4X5MA 3SQ4A 3SPZA 1FZ1E 3LD8A 3CQ8A 2OYQA 2DY4A 2RCUA 3QEXA 3TAFA 1DGBA 1FZ8E 4J2EA 1P22A 3RMAA 3E4WA 2PFVA 4M3ZA 3C6PB 3NE6A 4DTXA 2PFTA 2LF3A 4M45A 2H4TA 3CFRA 2JHAA 3SJJA 4KHWA 1TGUA 1XVCE 4DTNA 4FJ7A 1DGHB 4M3TA 1FZ3E 3MKSB 4I6JB 1MHYG 1CLQA 3UIQA 1FZ9E 1NEXB 2MMBA 4DTMA 2FYOA 3NAEA 2OVRB 1XVDE 3NWLA 4FJIA 1QQWA 3TAEA 2HD0A 4FJHA 2B8IA 1XMHE 2P5OA 4KI4A 4FJ9A 3NGIA 3SQ1A 4DTUA 3KD5E 4AKGA 4RNGA 4DTRA 4FK0A 4M3WA 3QETA 3NCIA 5GKNA 4KHNA 5IREA 3SVIA 3TJYA 3QEPA 4FJJA 3E4YA 1XL3C 2JHCA 3TABA 4I9QA 3C6OB 3RGSA 3J7BA 3NHGA 4J2AA 1XVBE 3RE8A 1TH3A 4JS5A 4M41A 1IG9A 3SPYA 4EYWA 2DEBA 2P1QB 5IZ7A 3SNNA 4GAMC 2OVQB 1XVGE 4RL5A 2LF6A 2OZSA 4FJNA 3QNNA 4E3SA 1FZ5E 3SUOA 3KD1E 1FYZE 3C94A 3S9HA 3SQ0A 3L0MA 4FJLA 4I9LA 2MZWB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQW A;  4B7H A;  1DGG A;  4B7F A;  1DGH A;  5GKN A;  4BLC A;  4B7G A;  3E4Y A;  3RGS A;  1DGB A;  3J7B A;  3E4W A;  1TH4 A;  1TH3 A;  3RE8 A;  3RGP A;  3NWL A;  1TGU A;  1TH2 A;  1DGH B;  8CAT A;  7CAT A;  1DGF A; 
#chains in the Genus database with same CATH topology
 3C95 A;  4DU3 A;  1XVE E;  1WAF A;  4ENP A;  3TL8 B;  4ADN A;  4M3X A;  2VJ5 A;  1FZ6 E;  2B7M A;  1FZH E;  1TH4 A;  1XMF E;  4QOM A;  3SUQ A;  4FJX A;  2E31 A;  1Q9X A;  4HCC A;  3SCX A;  3NDK A;  2OVP B;  4X5N A;  3WSO A;  1XVF E;  5BV2 P;  4DTS A;  2FW3 A;  4DTO A;  4FJ5 A;  4M3Y A;  2JPN A;  1MHZ G;  3HL8 A;  1WAJ A;  4HCB A;  4J2B A;  3N1B A;  3L2O B;  3K2O A;  2A9E A;  3L1N A;  2OZM A;  4JRP A;  4DU1 A;  2E32 A;  3SUP A;  3CFO A;  4B7F A;  2P1N B;  3UO2 A;  3LDS A;  1P7Y A;  2DY4 A;  3TAF A;  1P22 A;  4M3Z A;  3C6P B;  1GGE A;  3NE6 A;  4DTX A;  2PFT A;  3NWL A;  2H4T A;  3CFR A;  3SJJ A;  4ENQ A;  4FJ7 A;  1DGH B;  2IUF A;  4I6J B;  1FZ9 E;  4DTM A;  1H7K A;  2OVR B;  2HD0 A;  3SQ1 A;  4DTU A;  4RNG A;  5GKN A;  3NCI A;  4ICG C;  3SVI A;  3QEP A;  4FJJ A;  4ENR A;  3E4Y A;  4QOQ A;  3C6O B;  3J7B A;  4J2A A;  1P7Z A;  3EJ6 A;  4JS5 A;  1IG9 A;  5IZ7 A;  2OVQ B;  1XVG E;  4RL5 A;  2OZS A;  4FJN A;  3S9H A;  3L0M A;  2MZW B;  3P9S A;  3QNO A;  2RKH A;  3QEI A;  3PQ2 A;  3QES A;  3UO3 A;  4AKI A;  2CAH A;  3SI6 A;  5H37 A;  3RGP A;  4EPH A;  4DU4 A;  4IT5 A;  1XU5 E;  1XMG E;  3ZJ4 A;  3RWU A;  3LZJ A;  2VJ4 A;  5IBK B;  4B7H A;  4M3R A;  1FZ2 E;  3LZI A;  4B7G A;  4DTP A;  3OGM B;  3N1E A;  4FJG A;  1TH2 A;  3QEV A;  1A4E A;  4JS4 A;  4KHS A;  2JHP A;  3TTU A;  4QOL A;  3OGL B;  7CAT A;  2DTU A;  2P5G A;  1DGF A;  4QOP A;  4B40 A;  2P1O B;  4AKH A;  3RMD A;  4B7A A;  1XU3 E;  1U5U A;  1DGH A;  2JH9 A;  3HB6 A;  4X5M A;  1FZ1 E;  3LD8 A;  2OYQ A;  2RCU A;  3QEX A;  2PFV A;  3P9R A;  2LF3 A;  1TGU A;  1NM0 A;  3TTW A;  4M3T A;  3MKS B;  2FYO A;  1GGK A;  4FJI A;  1GGF A;  4FJH A;  2B8I A;  1IPH A;  4AKG A;  4M3W A;  4DTR A;  3QET A;  1P81 A;  4KHN A;  3TJY A;  1GGH A;  4B2Y A;  1XL3 C;  2JHC A;  4I9Q A;  2JQT A;  3NHG A;  4M41 A;  3SPY A;  4EYW A;  4ENS A;  2ISA A;  3QNN A;  4E3S A;  3C94 A;  3CFP A;  1E93 A;  4AUL A;  2JH8 A;  1IH7 A;  3J2P A;  1FXX A;  3TAG A;  3J27 A;  1M85 A;  4E37 A;  4ENU A;  1H6N A;  1F4J A;  1FZ7 E;  2P1P B;  8CAT A;  2MW2 A;  1GWE A;  3VU3 A;  3OGK B;  4BIM A;  1FZI E;  4AUN A;  1Q9Y A;  4KHQ A;  2IQF A;  3C6N B;  3V7D B;  4BFL A;  4AI6 A;  3LDB A;  4FJ8 A;  1GG9 A;  2ATQ A;  4JRQ A;  3P9Q A;  1GGJ A;  4DTJ A;  4RG8 A;  3QER A;  4B08 A;  4FJM A;  1QWM A;  4ENT A;  4ENV A;  3P9P A;  3DY5 A;  3TTV A;  1M7S A;  1QWS A;  4B5K A;  2J2M A;  1DGG A;  4ENW A;  1FS1 A;  3QEW A;  1FZ0 E;  1FPO A;  3RMB A;  4ADO A;  3L8B A;  3TTX A;  2CAG A;  1FZ8 E;  4J2E A;  3E4W A;  1SY7 A;  4QOR A;  4M45 A;  4KHW A;  2JHA A;  4B31 A;  1XVC E;  1CLQ A;  4AUE A;  1NEX B;  2XQ1 A;  3NAE A;  2K5S A;  1QQW A;  3TAE A;  2XF2 A;  1XMH E;  4FJ9 A;  3NGI A;  3TAB A;  1XVB E;  3RE8 A;  2P1Q B;  4GAM C;  2LF6 A;  1FZ5 E;  3SUO A;  3PQ3 A;  1N1C A;  3SQ0 A;  4FJL A;  4I9L A;  3HGL A;  1MTY G;  2P1M B;  3PQ4 A;  1GWF A;  2QXF A;  4KHY A;  3SUN A;  3TTT A;  1FZ4 E;  1MQF A;  4QND A;  4QNC A;  1LDK E;  3HGK E;  4FK4 A;  4KI6 A;  3RMC A;  1GWH A;  2VIX A;  2B1E A;  4EP9 A;  1MMO G;  2YB5 A;  4KHU A;  4AJ9 A;  4FK2 A;  4M42 A;  4E4B A;  3SQ2 A;  3BVO A;  4M3U A;  3HP9 A;  1SI8 A;  4FJK A;  4J2D A;  3PQ5 A;  3PQ8 A;  4QOO A;  4AUM A;  4BLC A;  4FVM A;  3SQ4 A;  3SPZ A;  1QWL A;  3CQ8 A;  1DGB A;  3RMA A;  4QON A;  1JW2 A;  4DTN A;  3PQ6 A;  1FZ3 E;  1MHY G;  3UIQ A;  2MMB A;  1XVD E;  1P80 A;  4KI4 A;  2P5O A;  4CAB A;  3KD5 E;  4FK0 A;  5IRE A;  3PQ7 A;  3RGS A;  1HBZ A;  1TH3 A;  1CF9 A;  2DEB A;  1QF7 A;  3SNN A;  3KD1 E;  1FYZ E;  3ZJ5 A; 
#chains in the Genus database with same CATH homology
 3HGL A;  3CFP A;  3C95 A;  4DU3 A;  1MTY G;  1XVE E;  3QNO A;  1WAF A;  2JH8 A;  3TL8 B;  4ADN A;  2P1M B;  1IH7 A;  3QEI A;  3J2P A;  4M3X A;  3QES A;  1FXX A;  3TAG A;  2VJ5 A;  3J27 A;  1FZ6 E;  2B7M A;  2QXF A;  4AKI A;  1FZH E;  4KHY A;  1TH4 A;  1XMF E;  3SI6 A;  5H37 A;  1FZ7 E;  4EPH A;  3SUN A;  3RGP A;  4DU4 A;  1FZ4 E;  3SUQ A;  4FJX A;  1XU5 E;  4QND A;  2E31 A;  1XMG E;  4QNC A;  1Q9X A;  1LDK E;  3RWU A;  4HCC A;  3HGK E;  4FK4 A;  3SCX A;  3NDK A;  2P1P B;  8CAT A;  2OVP B;  4X5N A;  4KI6 A;  3RMC A;  3LZJ A;  2VJ4 A;  3OGK B;  3WSO A;  5IBK B;  4B7H A;  1FZI E;  1XVF E;  4M3R A;  4DTS A;  1Q9Y A;  4KHQ A;  2FW3 A;  3C6N B;  4DTO A;  4FJ5 A;  2VIX A;  2JPN A;  3V7D B;  4M3Y A;  2B1E A;  4AI6 A;  4EP9 A;  1MHZ G;  3HL8 A;  1MMO G;  3LDB A;  2YB5 A;  1FZ2 E;  4KHU A;  4FJ8 A;  1WAJ A;  3LZI A;  4B7G A;  4HCB A;  2ATQ A;  4DTP A;  4J2B A;  4JRQ A;  3N1B A;  4FK2 A;  4M42 A;  4DTJ A;  3L2O B;  4E4B A;  4RG8 A;  3K2O A;  3SQ2 A;  3OGM B;  3QER A;  4B08 A;  3N1E A;  4FJG A;  4FJM A;  4M3U A;  3QEV A;  1TH2 A;  3HP9 A;  4JS4 A;  4KHS A;  2JHP A;  4FJK A;  4J2D A;  3L1N A;  2OZM A;  3OGL B;  7CAT A;  2DTU A;  4JRP A;  4DU1 A;  2P5G A;  1DGF A;  2P1O B;  4AKH A;  2E32 A;  3RMD A;  3SUP A;  1XU3 E;  3CFO A;  1DGG A;  1FS1 A;  3QEW A;  1FZ0 E;  2P1N B;  3RMB A;  4ADO A;  1DGH A;  4B7F A;  2JH9 A;  4BLC A;  3L8B A;  3LDS A;  4FVM A;  4X5M A;  3SQ4 A;  3SPZ A;  1FZ1 E;  3LD8 A;  3CQ8 A;  2OYQ A;  2DY4 A;  2RCU A;  3QEX A;  3TAF A;  1DGB A;  1FZ8 E;  4J2E A;  1P22 A;  3RMA A;  3E4W A;  2PFV A;  4M3Z A;  3C6P B;  3NE6 A;  4DTX A;  2PFT A;  2LF3 A;  4M45 A;  2H4T A;  3CFR A;  2JHA A;  3SJJ A;  4KHW A;  1TGU A;  1XVC E;  4DTN A;  4FJ7 A;  1DGH B;  4M3T A;  1FZ3 E;  3MKS B;  4I6J B;  1MHY G;  1CLQ A;  3UIQ A;  1FZ9 E;  1NEX B;  2MMB A;  4DTM A;  2FYO A;  3NAE A;  2OVR B;  1XVD E;  3NWL A;  4FJI A;  1QQW A;  3TAE A;  2HD0 A;  4FJH A;  2B8I A;  1XMH E;  2P5O A;  4KI4 A;  4FJ9 A;  3NGI A;  3SQ1 A;  4DTU A;  3KD5 E;  4AKG A;  4RNG A;  4DTR A;  4FK0 A;  4M3W A;  3QET A;  3NCI A;  5GKN A;  4KHN A;  5IRE A;  3SVI A;  3TJY A;  3QEP A;  4FJJ A;  3E4Y A;  1XL3 C;  2JHC A;  3TAB A;  4I9Q A;  3C6O B;  3RGS A;  3J7B A;  3NHG A;  4J2A A;  1XVB E;  3RE8 A;  1TH3 A;  4JS5 A;  4M41 A;  1IG9 A;  3SPY A;  4EYW A;  2DEB A;  2P1Q B;  5IZ7 A;  3SNN A;  4GAM C;  2OVQ B;  1XVG E;  4RL5 A;  2LF6 A;  2OZS A;  4FJN A;  3QNN A;  4E3S A;  1FZ5 E;  3SUO A;  3KD1 E;  1FYZ E;  3C94 A;  3S9H A;  3SQ0 A;  3L0M A;  4FJL A;  4I9L A;  2MZW B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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