3E6PL

Crystal structure of human meizothrombin desf1
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
150
structure length
150
Chain Sequence
QCVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGRTATSEYQTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Prothrombin
publication title Na(+) binding to meizothrombin desF1.
pubmed doi rcsb
source organism Homo sapiens
total genus 19
structure length 150
sequence length 150
ec nomenclature ec 3.4.21.5: Thrombin.
pdb deposition date 2008-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00051 Kringle Kringle domain
L PF09396 Thrombin_light Thrombin light chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 3e6pL01
4.10.140.10 Few Secondary Structures Irregular Epsilon-Thrombin; Chain L Thrombin light chain domain 3e6pL02
3HKIA 4DURA 1TBRJ 3B9FL 1HPKA 1KRNA 4A5TS 5CS1A 3BT1A 2PGQA 2DOHX 3K65A 2I9AA 5CSQA 1JFNA 1NL2A 4RKOA 4NZQA 4BV7A 2PF1A 1NL1A 1B2IA 1KDUA 1KIVA 3LU9A 2QJ2A 1TQ7A 5CS5A 1PK4A 2K51A 5HPGA 1AVGL 2DOIA 2KJ4A 5CP9A 4D3CA 5CT3A 4BVDA 1GMOA 2FEBA 1TB6L 4BV5A 5CS9A 2PK4A 1PMLA 3BEFA 1PMKA 2B5TA 1JOUA 4BVVA 5CT2A 2KNFA 4DY7A 2ODYA 3MKPA 1I5KA 3KIVA 1I71A 3NXPA 1CEAA 2FD6A 1GP9A 1TBQJ 1KI0A 2PV9A 4HZHA 2QJ4A 4IUAA 1PK2A 3HK6A 3BEIA 2HPQP 1TPKA 3BT2A 2SPTA 3U73A 1HPJA 4CIKA 1A0HA 1GMNA 1PKRA 1NK1A 2PUXA 2PF2A 1URKA 3HN4A 3GISA 2K4RA 2HPPP 4BVCA 3EDXA 4KIVA 1CEBA 3SP8A 3LAQA 2I9BA 1JMOL 5COEA 3E6PL 4BVWA 5CS3A 2A1DA 1Z8JA 5CT1A 2L0SA 4O03A 1BHTA
chains in the Genus database with same CATH superfamily
3HKIA 4DURA 1TBRJ 3B9FL 1HPKA 1KRNA 4A5TS 5CS1A 3BT1A 2PGQA 2DOHX 3K65A 2I9AA 5CSQA 1JFNA 1NL2A 4RKOA 4NZQA 4BV7A 2PF1A 1NL1A 1B2IA 1KDUA 1KIVA 3LU9A 2QJ2A 1TQ7A 5CS5A 1PK4A 2K51A 5HPGA 1AVGL 2DOIA 2KJ4A 5CP9A 4D3CA 5CT3A 4BVDA 1GMOA 2FEBA 1TB6L 4BV5A 5CS9A 2PK4A 1PMLA 3BEFA 1PMKA 2B5TA 1JOUA 4BVVA 5CT2A 2KNFA 4DY7A 2ODYA 3MKPA 1I5KA 3KIVA 1I71A 3NXPA 1CEAA 2FD6A 1GP9A 1TBQJ 1KI0A 2PV9A 4HZHA 2QJ4A 4IUAA 1PK2A 3HK6A 3BEIA 2HPQP 1TPKA 3BT2A 2SPTA 3U73A 1HPJA 4CIKA 1A0HA 1GMNA 1PKRA 1NK1A 2PUXA 2PF2A 1URKA 3HN4A 3GISA 2K4RA 2HPPP 4BVCA 3EDXA 4KIVA 1CEBA 3SP8A 3LAQA 2I9BA 1JMOL 5COEA 3E6PL 4BVWA 5CS3A 2A1DA 1Z8JA 5CT1A 2L0SA 4O03A 1BHTA
chains in the Genus database with same CATH topology
3HKIA 4DURA 1TBRJ 3B9FL 1HPKA 1KRNA 4A5TS 5CS1A 3BT1A 2PGQA 2DOHX 3K65A 2I9AA 5CSQA 1JFNA 1NL2A 4RKOA 4NZQA 4BV7A 2PF1A 1NL1A 1B2IA 1KDUA 1KIVA 3LU9A 2QJ2A 1TQ7A 5CS5A 1PK4A 2K51A 5HPGA 1AVGL 2DOIA 2KJ4A 5CP9A 4D3CA 5CT3A 4BVDA 1GMOA 2FEBA 1TB6L 4BV5A 5CS9A 2PK4A 1PMLA 3BEFA 1PMKA 2B5TA 1JOUA 4BVVA 5CT2A 2KNFA 4DY7A 2ODYA 3MKPA 1I5KA 3KIVA 1I71A 3NXPA 1CEAA 2FD6A 1GP9A 1TBQJ 1KI0A 2PV9A 4HZHA 2QJ4A 4IUAA 1PK2A 3HK6A 3BEIA 2HPQP 1TPKA 3BT2A 2SPTA 3U73A 1HPJA 4CIKA 1A0HA 1GMNA 1PKRA 1NK1A 2PUXA 2PF2A 1URKA 3HN4A 3GISA 2K4RA 2HPPP 4BVCA 3EDXA 4KIVA 1CEBA 3SP8A 3LAQA 2I9BA 1JMOL 5COEA 3E6PL 4BVWA 5CS3A 2A1DA 1Z8JA 5CT1A 2L0SA 4O03A 1BHTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HKI A;  4DUR A;  1TBR J;  3B9F L;  1HPK A;  1KRN A;  4A5T S;  5CS1 A;  3BT1 A;  2PGQ A;  2DOH X;  3K65 A;  2I9A A;  5CSQ A;  1JFN A;  1NL2 A;  4RKO A;  4NZQ A;  4BV7 A;  2PF1 A;  1NL1 A;  1B2I A;  1KDU A;  1KIV A;  3LU9 A;  2QJ2 A;  1TQ7 A;  5CS5 A;  1PK4 A;  2K51 A;  5HPG A;  1AVG L;  2DOI A;  2KJ4 A;  5CP9 A;  4D3C A;  5CT3 A;  4BVD A;  1GMO A;  2FEB A;  1TB6 L;  4BV5 A;  5CS9 A;  2PK4 A;  1PML A;  3BEF A;  1PMK A;  2B5T A;  1JOU A;  4BVV A;  5CT2 A;  2KNF A;  4DY7 A;  2ODY A;  3MKP A;  1I5K A;  3KIV A;  1I71 A;  3NXP A;  1CEA A;  2FD6 A;  1GP9 A;  1TBQ J;  1KI0 A;  2PV9 A;  4HZH A;  2QJ4 A;  4IUA A;  1PK2 A;  3HK6 A;  3BEI A;  2HPQ P;  1TPK A;  3BT2 A;  2SPT A;  3U73 A;  1HPJ A;  4CIK A;  1A0H A;  1GMN A;  1PKR A;  1NK1 A;  2PUX A;  2PF2 A;  1URK A;  3HN4 A;  3GIS A;  2K4R A;  2HPP P;  4BVC A;  3EDX A;  4KIV A;  1CEB A;  3SP8 A;  3LAQ A;  2I9B A;  1JMO L;  5COE A;  3E6P L;  4BVW A;  5CS3 A;  2A1D A;  1Z8J A;  5CT1 A;  2L0S A;  4O03 A;  1BHT A; 
#chains in the Genus database with same CATH topology
 3HKI A;  4DUR A;  1TBR J;  3B9F L;  1HPK A;  1KRN A;  4A5T S;  5CS1 A;  3BT1 A;  2PGQ A;  2DOH X;  3K65 A;  2I9A A;  5CSQ A;  1JFN A;  1NL2 A;  4RKO A;  4NZQ A;  4BV7 A;  2PF1 A;  1NL1 A;  1B2I A;  1KDU A;  1KIV A;  3LU9 A;  2QJ2 A;  1TQ7 A;  5CS5 A;  1PK4 A;  2K51 A;  5HPG A;  1AVG L;  2DOI A;  2KJ4 A;  5CP9 A;  4D3C A;  5CT3 A;  4BVD A;  1GMO A;  2FEB A;  1TB6 L;  4BV5 A;  5CS9 A;  2PK4 A;  1PML A;  3BEF A;  1PMK A;  2B5T A;  1JOU A;  4BVV A;  5CT2 A;  2KNF A;  4DY7 A;  2ODY A;  3MKP A;  1I5K A;  3KIV A;  1I71 A;  3NXP A;  1CEA A;  2FD6 A;  1GP9 A;  1TBQ J;  1KI0 A;  2PV9 A;  4HZH A;  2QJ4 A;  4IUA A;  1PK2 A;  3HK6 A;  3BEI A;  2HPQ P;  1TPK A;  3BT2 A;  2SPT A;  3U73 A;  1HPJ A;  4CIK A;  1A0H A;  1GMN A;  1PKR A;  1NK1 A;  2PUX A;  2PF2 A;  1URK A;  3HN4 A;  3GIS A;  2K4R A;  2HPP P;  4BVC A;  3EDX A;  4KIV A;  1CEB A;  3SP8 A;  3LAQ A;  2I9B A;  1JMO L;  5COE A;  3E6P L;  4BVW A;  5CS3 A;  2A1D A;  1Z8J A;  5CT1 A;  2L0S A;  4O03 A;  1BHT A; 
#chains in the Genus database with same CATH homology
 3HKI A;  4DUR A;  1TBR J;  3B9F L;  1HPK A;  1KRN A;  4A5T S;  5CS1 A;  3BT1 A;  2PGQ A;  2DOH X;  3K65 A;  2I9A A;  5CSQ A;  1JFN A;  1NL2 A;  4RKO A;  4NZQ A;  4BV7 A;  2PF1 A;  1NL1 A;  1B2I A;  1KDU A;  1KIV A;  3LU9 A;  2QJ2 A;  1TQ7 A;  5CS5 A;  1PK4 A;  2K51 A;  5HPG A;  1AVG L;  2DOI A;  2KJ4 A;  5CP9 A;  4D3C A;  5CT3 A;  4BVD A;  1GMO A;  2FEB A;  1TB6 L;  4BV5 A;  5CS9 A;  2PK4 A;  1PML A;  3BEF A;  1PMK A;  2B5T A;  1JOU A;  4BVV A;  5CT2 A;  2KNF A;  4DY7 A;  2ODY A;  3MKP A;  1I5K A;  3KIV A;  1I71 A;  3NXP A;  1CEA A;  2FD6 A;  1GP9 A;  1TBQ J;  1KI0 A;  2PV9 A;  4HZH A;  2QJ4 A;  4IUA A;  1PK2 A;  3HK6 A;  3BEI A;  2HPQ P;  1TPK A;  3BT2 A;  2SPT A;  3U73 A;  1HPJ A;  4CIK A;  1A0H A;  1GMN A;  1PKR A;  1NK1 A;  2PUX A;  2PF2 A;  1URK A;  3HN4 A;  3GIS A;  2K4R A;  2HPP P;  4BVC A;  3EDX A;  4KIV A;  1CEB A;  3SP8 A;  3LAQ A;  2I9B A;  1JMO L;  5COE A;  3E6P L;  4BVW A;  5CS3 A;  2A1D A;  1Z8J A;  5CT1 A;  2L0S A;  4O03 A;  1BHT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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