3E7NA

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
Knots found
sequence length
140
structure length
140
Chain Sequence
NAMKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
rcsb
source organism Salmonella typhimurium
molecule tags Transport protein
molecule keywords D-ribose high-affinity transport system
total genus 49
structure length 140
sequence length 140
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.99.62: D-ribose pyranase.
pdb deposition date 2008-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05025 RbsD_FucU RbsD / FucU transport protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1650.10 Alpha Beta 3-Layer(aba) Sandwich RbsD-like fold RbsD-like domain 3e7nA01
1OGDA 1OGEA 2WCVA 1OGCA 1OGFA 2WCUA 3E7NA 4A34A 3P13A 3MVKA 3P12A 2OB5A
chains in the Genus database with same CATH superfamily
1OGDA 1OGEA 2WCVA 1OGCA 1OGFA 2WCUA 3E7NA 4A34A 3P13A 3MVKA 3P12A 2OB5A
chains in the Genus database with same CATH topology
1OGDA 1OGEA 2WCVA 1OGCA 1OGFA 2WCUA 3E7NA 4A34A 3P13A 3MVKA 3P12A 2OB5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGD A;  1OGE A;  2WCV A;  1OGC A;  1OGF A;  2WCU A;  3E7N A;  4A34 A;  3P13 A;  3MVK A;  3P12 A;  2OB5 A; 
#chains in the Genus database with same CATH topology
 1OGD A;  1OGE A;  2WCV A;  1OGC A;  1OGF A;  2WCU A;  3E7N A;  4A34 A;  3P13 A;  3MVK A;  3P12 A;  2OB5 A; 
#chains in the Genus database with same CATH homology
 1OGD A;  1OGE A;  2WCV A;  1OGC A;  1OGF A;  2WCU A;  3E7N A;  4A34 A;  3P13 A;  3MVK A;  3P12 A;  2OB5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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